Submissions
GlyTouCan
Glycan Structure Repository
GlyComb
Glycoconjugate Repository
GlycoPOST
Glycomics MS raw data Repository
UniCarb-DR
Glycomics MS Repository for glycan annotations from GlycoWorkbench
LM-GlycoRepo
Repository for lectin-assisted multimodality data
All Resources
Genes / Proteins / Lipids Glycans / Glycoconjugates Glycomes Pathways / Interactions / Diseases / Organisms
PDZ and LIM domain 5
Summary
- Gene Symbol
-
- Pdlim5
- Organism
- Rattus norvegicus (Norway rat)
Annotation
- Keyword
-
- Acetylation
- Alternative splicing
- Cell projection
- Cytoplasm
- Isopeptide bond
- LIM domain
- Phosphoprotein
- Proteomics identification
- Reference proteome
- Repeat
- Synapse
- Ubl conjugation
- Proteins
| UniProt | Protein Name |
|---|---|
| A0A8I6GJY3 |
|
| A0A8I6GJC1 |
|
| A0A8I6B1G1 |
|
| Q62920 |
|
| A6HW57 |
|
| A6HW58 |
|
| A0A8L2QCL7 |
|
Gene Ontology (GO)
| GO Term | Evidence Code | PMID |
|---|---|---|
| actin cytoskeleton organization | ||
| heart development | ||
| muscle structure development | ||
| regulation of synapse assembly | ||
| cell growth involved in cardiac muscle cell development |
| GO Term | Evidence Code | PMID |
|---|---|---|
| membrane | ||
| postsynaptic density | ||
| postsynapse | ||
| presynapse | ||
| filamentous actin |
GO Hierarchy
| GO Term | Evidence Code | PMID |
|---|---|---|
| protein binding | ||
| actin binding | ||
| actinin binding | ||
| metal ion binding | ||
| muscle alpha-actinin binding |
GO Hierarchy
OrthoDB (Group)
- Group level
- Rodentia
- Group Name
- PDZ and LIM domain protein 5
- Functional Category
-
- E: Amino acid transport and metabolism
- O: Posttranslational modification, protein turnover, chaperones
- P: Inorganic ion transport and metabolism
| Gene Ontology |
|---|
| actin binding |
| actin cytoskeleton organization |
| metal ion binding |
| muscle alpha-actinin binding |
| muscle structure development |
| InterPro |
|---|
| PDZ domain |
| PDZ superfamily |
| Zinc finger, LIM-type |
Disease
- Disease Ontology
| DO ID | Disease Name | Source |
|---|---|---|
| DOID:0050700 | cardiomyopathy | |
| DOID:0080095 | myofibrillar myopathy 4 | |
| DOID:12930 | dilated cardiomyopathy | |
| DOID:423 | myopathy |
Ortholog
| Species | Gene ID | OrthoDB | Alliance of Genome Resources | Orthologous MAtrix |
|---|---|---|---|---|
| 10611 | HGNC:17468 | HUMAN76611 | ||
| 36740 | FB:FBgn0265991 | |||
| 56376 | 10090_1:000f46 | MGI:1927489 | MOUSE38472 | |
| 177701 | WB:WBGene00001132 | |||
| 393165 | ZFIN:ZDB-GENE-040426-908 | |||
| 436927 | ZFIN:ZDB-GENE-040718-401 | DANRE35929 | ||
| 461385 | PANTR34132 | |||
| 478482 | CANLF13081 | |||
| 503621 | BOVIN31208 | |||
| 548530 | Xenbase:XB-GENE-854114 |
