GlyCosmos Portal

Displaying entries **1 - 5** of 19 in total

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GO Term	Evidence Code	PMID
nucleus	IDA IMP	14744935 14963330 16322561 16479015 16507995 17403783 18756595 19011621 19234109 20096447 20810912 21597459 24101517 24289924 24625977 26634371 7720704
nuclear body	IDA	10360174
endoplasmic reticulum	IEA
cytosol	IDA TAS	14963330 24101517
cytoplasm	IDA IMP	14744935 16131611 16479015 19011621 20096447 20810912 21597459 23629966 24625977 26634371 7720704

GO Hierarchy

cellular component

protein-containing complex

transcription regulator complex

transcription repressor complex

protein-DNA complex [inference]

chromatin

cellular anatomical entity [inference]

microtubule organizing center [inference]

centrosome

nuclear body

PML body

membrane-enclosed lumen [inference]

organelle lumen [inference]

intracellular organelle lumen [inference]

mitochondrial matrix

organelle [inference]

membrane-bounded organelle [inference]

intracellular membrane-bounded organelle [inference]

nucleus

germ cell nucleus

non-membrane-bounded organelle [inference]

intracellular non-membrane-bounded organelle [inference]

nucleolus

intracellular organelle [inference]

intracellular membrane-bounded organelle [inference]

nucleus

germ cell nucleus

intracellular non-membrane-bounded organelle [inference]

nucleolus

site of DNA damage [inference]

site of double-strand break

Displaying entries **26 - 30** of 35 in total

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GO Term	Evidence Code	PMID
molecular function activator activity	EXP IPI	14759370 16793543 7559631
protein binding	IPI	10196247 10226625 10415337 10518217 10597287 10608892 10666337 10823891 11080164 11146555 11178989 11359905 11388671 11427532 11546806 11672523 11684014 11706030 11781842 11861836 11877378 11950834 12006491 12080348 12620801 12667443 12692135 12702766 12730672 12750254 12915590 14557665 14627987 1465435 14744935 14759370 14963330 14985081 15044383 15068796 15133049 15144954 15205477 15310821 15364927 15525938 15542844 15577914 15580310 15604276 15660129 15687255 15710329 15735003 15735006 15782130 15855171 15916963 15960975 15989956 16003391 16151013 16169070 16189514 16227626 16319068 16322561 16376338 16376884 16377624 16402859 16415881 16432196 16442532 16443602 16474402 16493710 16601686 16611888 16616141 16690937 16713569 16732283 16753148 16793543 16845383 16847267 16951253 16959611 17080083 17098746 17108971 17121812 17139261 17145718 17159902 17170702 17184779 17237821 17245430 17254968 17268548 17274640 17290220 17298945 17310983 17317671 17347673 17438265 17470788 17482142 17568776 17612295 17662718 17707234 17719541 17719542 17805299 17875722 17904127 17906639 17964266 18087040 18172499 18230339 18235501 18235502 18275817 18309296 18316739 18354501 18382127 18388957 18391200 18485870 18504427 18510931 18566590 18624398 18656471 18690848 18695251 18812399 18952844 18977328 19008854 19011621 19043414 19098711 19151705 19166840 19196987 19217391 19234109 19255450 19339993 19345189 19411066 19433796 19483087 19508870 19521340 19536131 19556538 19619542 19626115 19651603 19656744 19680552 19684601 19740107 19798103 19805293 19833129 19857493 19883646 19933256 20075864 20096447 20118233 20123734 20124405 20134482 20153329 20159018 20167603 20173098 20206173 20227041 20228809 20385133 20421506 20452352 20515689 20534433 20562916 20591429 20622899 20660729 20705607 20708156 20713054 20864041 20959462 21057547 21078964 21081126 21130767 21132010 21170034 21170087 21245319 21317932 21390126 21397192 21423215 21460856 21471221 21513714 21597459 21625211 21653829 21670263 21726810 21741598 21782458 21821029 21831840 21857681 21892170 21900206 21952639 21988832 22056774 22085928 22103682 22124327 22265415 22340593 22451927 22499945 22510990 22522597 22575647 22653443 22659184 22723347 22726440 22810585 22810586 22819825 22945289 22975381 23010591 23063560 23092970 23320542 23431171 23576507 23623661 23734815 23752197 23776060 23870121 24207125 24219989 24380853 24449765 24492002 24625977 24667498 24722188 24814347 25168243 25241761 25314079 25402006 25422469 25502805 25579814 25591766 25609649 25651062 25670079 25837623 25857266 26302407 26331536 26789255 27107012 27323408 27519799 27605672 28842590 29187402 29340707 29628311 29997244 31467278 31511497 31515488 31837246 32606738 32814053 33591310 34316702 34404770 34591612 34591642 35044719 35122041 35140242 36931259 7663514 7799929 8207801 8344494 8675009 8875926 8875929 9050995 9188558 9194564 9194565 9380510 9472015 9529249 9733515 9807817 9827557
transcription cis-regulatory region binding	IDA	15710329 17996705
RNA polymerase II cis-regulatory region sequence-specific DNA binding	IBA IDA ISS	22578566 24289924
protease binding	IPI	11923872

GO Hierarchy

molecular function

binding [inference]

protein binding

basal transcription machinery binding [inference]

basal RNA polymerase II transcription machinery binding [inference]

RNA polymerase II general transcription initiation factor binding [inference]

TFIID-class transcription factor complex binding

p53 binding

signaling receptor binding [inference]

receptor tyrosine kinase binding

transcription factor binding [inference]

general transcription initiation factor binding

RNA polymerase II general transcription initiation factor binding [inference]

TFIID-class transcription factor complex binding

DNA-binding transcription factor binding [inference]

RNA polymerase II-specific DNA-binding transcription factor binding

enzyme binding

protease binding

kinase binding [inference]

protein kinase binding [inference]

protein tyrosine kinase binding [inference]

receptor tyrosine kinase binding

phosphatase binding [inference]

protein phosphatase binding [inference]

protein phosphatase 2A binding

histone deacetylase binding

ubiquitin-like protein ligase binding [inference]

ubiquitin protein ligase binding

protein domain specific binding [inference]

disordered domain specific binding

protein dimerization activity [inference]

protein heterodimerization activity

ion binding [inference]

cation binding [inference]

metal ion binding [inference]

transition metal ion binding [inference]

protein-containing complex binding [inference]

TFIID-class transcription factor complex binding

chromatin binding

promoter-specific chromatin binding

organic cyclic compound binding [inference]

nucleic acid binding [inference]

transcription regulatory region nucleic acid binding [inference]

transcription cis-regulatory region binding

RNA polymerase II transcription regulatory region sequence-specific DNA binding [inference]

RNA polymerase II cis-regulatory region sequence-specific DNA binding

cis-regulatory region sequence-specific DNA binding

RNA polymerase II cis-regulatory region sequence-specific DNA binding

core promoter sequence-specific DNA binding

DNA binding

double-stranded DNA binding [inference]

sequence-specific double-stranded DNA binding [inference]

transcription cis-regulatory region binding

RNA polymerase II transcription regulatory region sequence-specific DNA binding [inference]

RNA polymerase II cis-regulatory region sequence-specific DNA binding

cis-regulatory region sequence-specific DNA binding

RNA polymerase II cis-regulatory region sequence-specific DNA binding

core promoter sequence-specific DNA binding

single-stranded DNA binding [inference]

DNA/DNA annealing activity [inference]

ATP-dependent DNA/DNA annealing activity

sequence-specific DNA binding [inference]

sequence-specific double-stranded DNA binding [inference]

transcription cis-regulatory region binding

RNA polymerase II transcription regulatory region sequence-specific DNA binding [inference]

RNA polymerase II cis-regulatory region sequence-specific DNA binding

cis-regulatory region sequence-specific DNA binding

RNA polymerase II cis-regulatory region sequence-specific DNA binding

core promoter sequence-specific DNA binding

RNA binding [inference]

mRNA binding [inference]

mRNA 3'-UTR binding

annealing activity [inference]

DNA/DNA annealing activity [inference]

ATP-dependent DNA/DNA annealing activity

molecular function regulator activity [inference]

enzyme regulator activity [inference]

histone deacetylase regulator activity

molecular function activator activity

transcription regulator activity [inference]

DNA-binding transcription factor activity

DNA-binding transcription factor activity, RNA polymerase II-specific

DNA-binding transcription activator activity [inference]

DNA-binding transcription activator activity, RNA polymerase II-specific

DNA-binding transcription repressor activity [inference]

DNA-binding transcription repressor activity, RNA polymerase II-specific

ATP-dependent activity [inference]

ATP-dependent DNA/DNA annealing activity

Gene Ontology information from NCBI Gene and UniProt.

Disease

Disease Ontology

Displaying entries **11 - 20** of 79 in total

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DO ID	Disease Name	Source
DOID:0060074	ductal carcinoma in situ	Alliance of Genome Resources
DOID:0080199	colorectal carcinoma	Alliance of Genome Resources
DOID:0080202	adenoid cystic carcinoma	Alliance of Genome Resources
DOID:0080630	B-lymphoblastic leukemia/lymphoma	Alliance of Genome Resources
DOID:0081267	graft-versus-host disease	Alliance of Genome Resources
DOID:0081292	traumatic brain injury	Alliance of Genome Resources
DOID:0081312	T-cell non-Hodgkin lymphoma	Alliance of Genome Resources
DOID:0111503	Li-Fraumeni syndrome 1	Alliance of Genome Resources
DOID:0112182	mismatch repair cancer syndrome	Alliance of Genome Resources
DOID:10283	prostate cancer	Alliance of Genome Resources

Ortholog

Displaying entries **1 - 10** of 62 in total

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Species	Gene ID	Alliance of Genome Resources	Orthologous MAtrix
Drosophila melanogaster	2768677	FB:FBgn0039044
Latimeria chalumnae	102366539		LATCH10910
Lepisosteus oculatus	102690789		LEPOC07666
Danio rerio	30590	ZFIN:ZDB-GENE-990415-270	DANRE35793
Ictalurus punctatus	100304476		ICTPU23515
Electrophorus electricus	113570174		ELEEL07547
Salmo salar	106602901		SALSA120216
Salmo trutta	115154926		SALTR105039
Xenopus laevis	397926	Xenbase:XB-GENE-6252168
Xenopus laevis	108703451	Xenbase:XB-GENE-17346471

GlyTouCan

GlyComb

GlycoPOST

UniCarb-DR

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Acknowledgements