Pathogen Adherence to Carbohydrate Database (PACDB)
PACDB provides the information on pathogens (e.g. bacteria, fungus, toxin and virus) adhering to carbohydrates expressed on the cell surface of host animals or plants.
| Database | Last Updated |
|---|---|
| Pathogen Adherence to Carbohydrate Database (PACDB) | June 1, 2016 |
| Species | Pathogen Adherence Molecule | Ligand Name | Ligand Feature | Target Source | Glycan Sequence | Binding | PubMed ID |
|---|---|---|---|---|---|---|---|
|
Unknown
|
Sulfatide (CSE)
|
Sulfoglycosphingolipids
|
Intestinal tract
|
HSO3(-3)Gal(b1-1)Cer
|
Binding
|
||
|
Botulinum neurotoxin (type C)
|
GT1b
|
Trisialoglycosphingolipids
|
Presynaptic neuronal cells
|
NeuAc(a2-3)Gal(b1-3)GalNAc(b1-4)[NeuAc(a2-8)NeuAc(a2-3)]Gal(b1-4)Glc(b1-1)Cer
|
Binding
|
||
|
Tetanus toxin
|
GT1b
|
Trisialoglycosphingolipids
|
Brain membrane
|
NeuAc(a2-3)Gal(b1-3)GalNAc(b1-4)[NeuAc(a2-8)NeuAc(a2-3)]Gal(b1-4)Glc(b1-1)Cer
|
Binding
|
||
|
BoNT/C (located within amino acid residues 1122-1290)
|
GT1b
|
Trisialoglycosphingolipids
|
Presynaptic neuronal cells
|
NeuAc(a2-3)Gal(b1-3)GalNAc(b1-4)[NeuAc(a2-8)NeuAc(a2-3)]Gal(b1-4)Glc(b1-1)Cer
|
Binding
|
||
|
Hemagglutinin (HA)
|
GT1b
|
Trisialoglycosphingolipids
|
Various human tissues (leukocytes/erythrocytes/small intestine/stomach/meconium/colon/pancreas)
|
NeuAc(a2-3)Gal(b1-3)GalNAc(b1-4)[NeuAc(a2-8)NeuAc(a2-3)]Gal(b1-4)Glc(b1-1)Cer
|
Binding
|
||
|
Unknown
|
GT1b
|
Trisialoglycosphingolipids
|
Brain membrane
|
NeuAc(a2-3)Gal(b1-3)GalNAc(b1-4)[NeuAc(a2-8)NeuAc(a2-3)]Gal(b1-4)Glc(b1-1)Cer
|
Binding
|
||
|
Unknown
|
O-linked alpha 2,3 neuraminic acid on glycophorin A (GPA)
|
Glycoproteins
|
Human erythrocytes
|
Binding
|
|||
|
Adhesins
|
PMN (polymorphonuclear leukocytes) surface glycoproteins in the presence of sialic acid
|
Glycoproteins
|
Human peripheral blood buffy coat cells
|
Binding
|
|||
|
Unknown
|
N-linked sialylated glycoproteins
|
Glycoproteins
|
Pig neurons, glial cells
|
Binding
|
|||
|
Unknown
|
Dermatan sulfate
|
Glycosaminoglycans
|
Glial cells
|
Binding
|
Displaying entries 41 - 50 of 1840 in total
International Collaboration
GlyCosmos is a member of the GlySpace Alliance together with GlyGen and Glycomics@ExPASy.
Acknowledgements
Supported by JST NBDC Grant Number JPMJND2204
Partly supported by NIH Common Fund Grant #1U01GM125267-01
