GlyCosmos Portal

GlyCosmos Pathways

Integrated of pathway data, containing glycoproteins and glycans obtained from Reactome and the Metabolism of carbohydrates in Escherichia coli O-antigens obtained from ECODAB. Search by pathway name, species, and protein name.

Source	Last Updated
Reactome	March 20, 2024
ECODAB	April 1, 2019

Displaying entries **126 - 150** of **252** in total

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Pathway Name	Protein Name	UniProt ID	Gene Symbol	Organism
FGFR2b ligand binding and activation	Fibroblast growth factor 3 Fibroblast growth factor receptor 2 Fibroblast growth factor Fibroblast growth factor Fibroblast growth factor Putative fibroblast growth factor 1	B3DHR9 P48802 Q1XG76 Q6PBT8 Q8AY90 Q8JG38	fgf-1 fgf-10 fgf-3 fgf1 fgf10 fgf10a fgf22 fgf3 fgf7 fgfr2 si:dkey-21e2.2 si:dkeyp-74c5.3 wu:fd11d03 zgc:109774	Danio rerio (zebrafish)
Signaling by ALK	1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase gamma ALK and LTK ligand 1 ALK and LTK ligand 2b ALK tyrosine kinase receptor Midkine Phosphatidylinositol 3-kinase regulatory subunit alpha Phosphatidylinositol 3-kinase regulatory subunit beta Pleiotrophin phosphatidylinositol-4,5-bisphosphate 3-kinase phosphatidylinositol-4,5-bisphosphate 3-kinase	B0S6V7 B3DHG9 E7F251 E7FAP8 F1QAD7 F8W2C9 F8W3R9 Q502U6 Q804J6 Q9DDG2	alk alkal1 alkal2b cb518 fb79b05 fj33b02 fj46f04 fj48a12 mdk mdk2 mdkb pik3ca pik3cb pik3r1 pik3r2 plcg1 plei2 ptn wu:fb65b05 wu:fb79b05 wu:fj33b02 wu:fj46f04 wu:fj48a12 wu:fj57a05 zHBNF zgc:111787	Danio rerio (zebrafish)
Enzymatic degradation of Dopamine by monoamine oxidase	Catechol O-methyltransferase A	F4ZGF2	comta	Danio rerio (zebrafish)
Nectin/Necl trans heterodimerization	Cell adhesion molecule 1b isoform 1 Nectin 1b Nectin-3-like protein	B0F6R1 B0JYH6 Q58EG3	cadm1b nectin1b nectin3 pvrl1b pvrl3l sc:d0664	Danio rerio (zebrafish)
Neurotransmitter receptors and postsynaptic signal transmission	Glycine receptor betaZ subunit (Fragment) Glycine receptor subunit alpha-2 Glycine receptor subunit alphaZ1	F1R8P4 O93430 Q9DES8	[b]Z fj42f03 glra1 glra2 glrb glrb1 glrba glyR beta wu:fj42f03	Danio rerio (zebrafish)
GP1b-IX-V activation signalling	Glycoprotein Ib platelet subunit beta LOC100004428 protein Nyctalopin Phosphatidylinositol 3-kinase regulatory subunit alpha Proto-oncogene tyrosine-protein kinase Src Tsukushi Tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide like isoform X1 von Willebrand factor	A4QNV9 B0S6V7 B8JLP1 E7F9Z1 Q00P20 Q1JPZ3 Q58A48 Q6P102	LOC100004428 VWF gp1bb hm:zehn0976 lrcc54 nyx pik3r1 si:ch1073-474e24.1 si:dkey-285c2.8 src tsk tsku vasn vasnb vwf wu:fb33b01 wu:fb65b05 ywhabl zgc:73065 zgc:77351	Danio rerio (zebrafish)
FGFR1c and Klotho ligand binding and activation	Fgf23 Fibroblast growth factor receptor 1-A Klotho	F1RC43 Q5MK87 Q90Z00	fgf23 fgfr1 fgfr1a kl	Danio rerio (zebrafish)
Degradation of the extracellular matrix	72 kDa type IV collagenase Brevican core protein Cadherin-1 Calpain 1, (mu/I) large subunit a Calpain small subunit 1 Calpain, small subunit 1 b Calpain-1 catalytic subunit-like isoform X1 Calpain-1 catalytic subunit Calpain-2 catalytic subunit Calpain-5 Calpain-7 Calpain-9 Cathepsin K Cathepsin L.1 Cathepsin L1-like precursor Decorin Im Im Matrix metalloproteinase 14 (Membrane-inserted) alpha Matrix metalloproteinase-9 Spp1 Stromelysin-2 precursor Uncharacterized protein LOC100136837 Uncharacterized protein LOC559822 Uncharacterized protein LOC567623 precursor Uncharacterized protein LOC678524 isoform X1 Uncharacterized protein LOC793035 precursor	A0JMG3 A4JYN2 A4QNV6 A7MBX1 A7MCR6 A8E588 A8KBT8 A8WFS5 A8WFS6 B4F6P1 B8A6G0 E7F0H3 E9QBE2 F1QW40 Q1LYC9 Q1RM69 Q568D6 Q5BLH5 Q6DG44 Q6DHT0 Q6IVB9 Q7SZM5 Q7T2J2 Q7T317 Q7ZUR1 Q803T1 Q90Z37	Capn1 DC E-cad MMPLf ZFMMP-9 bcan capn1 capn1a capn2a capn5a capn7 capn9 capns1 capns1a capns1b cb386 cb536 cb545 cb616 cdh1 ctsk ctsl ctsl.1 dcn decorin fa18a08 fb77d06 fi32a12 fj05a08 fj67g01 im:6910535 mmp14a mmp2 mmp30 mmp9 sb:cb386 si:ch211-202f3.4 si:dkey-239j18.2 si:dkey-269i1.3 si:dkey-46g23.4 spp1 wu:fa18a08 wu:fa95f03 wu:fa99h12 wu:fb02g06 wu:fb07b05 wu:fb08b05 wu:fb72b09 wu:fb77d06 wu:fb81g08 wu:fi32a12 wu:fi98c09 wu:fj05a08 wu:fj67g01 wu:fk89d01 wu:fl09e04 zgc:110367 zgc:110603 zgc:111821 zgc:113590 zgc:136396 zgc:136872 zgc:153446 zgc:162184 zgc:171446 zgc:171735 zgc:63788 zgc:64165 zgc:92089 zgc:92451	Danio rerio (zebrafish)
Transport of inorganic cations/anions and amino acids/oligopeptides	Amino acid transporter Amino acid transporter Amino acid transporter Amino acid transporter Amino acid transporter Cystinosin precursor Mitochondrial S-adenosylmethionine carrier protein Vesicular inhibitory amino acid transporter	A1L1T3 C5H4R2 D7RVR6 D7RVR8 D7RVS0 D7RVS5 Q4V9P0 Q503T0	EAAT3 EAAT5A SLC1A2a SLC1A7 ctns samc si:ch211-284b7.1 si:ch73-116b16.2 si:dkey-21n12.2 slc1a1 slc1a2a slc1a3b slc1a7 slc1a7a slc1a7b slc25a26 slc32a1 zgc:110194 zgc:158324 zgc:91959	Danio rerio (zebrafish)
RHO GTPases regulate CFTR trafficking	Cystic fibrosis transmembrane conductance regulator Golgi-associated PDZ and coiled-coil motif-containing Ras homolog family member Q	Q1LX78 Q6PHG0 Q7ZVI3	cftr fe38f01 gopc rhoq wu:fe38f01 wu:fi15a09 zgc:55997 zgc:56254 zgc:65853	Danio rerio (zebrafish)
FGFR2c ligand binding and activation	FGF18a Fgf23 Fibroblast growth factor 16 Fibroblast growth factor 17 Fibroblast growth factor 8 Fibroblast growth factor receptor 2 Fibroblast growth factor Fibroblast growth factor Fibroblast growth factor Fibroblast growth factor Fibroblast growth factor Putative fibroblast growth factor 1	B3DGE3 O57341 Q2HXK8 Q38PL0 Q5MK87 Q5TKR8 Q5TLE1 Q5TLE2 Q6PBT8 Q6SJP8 Q8JG38 Q9DFC9	dob fc89b01 fgf-1 fgf-8 fgf1 fgf16 fgf17 fgf17b fgf18 fgf18a fgf2 fgf20a fgf23 fgf4 fgf5 fgf6b fgf8 fgf8a fgfr2 id:ibd5158 wu:fb05c08 wu:fc89b01 zgc:194535	Danio rerio (zebrafish)
Sema4D mediated inhibition of cell attachment and migration	Hepatocyte growth factor receptor Plexin b1b RAS-related Ras-like protein Rnd1a Rho GTPase-activating protein 35 Rho-related GTP-binding protein RhoA-C	E7F8G5 F1Q7U0 F1QLR7 Q4V9D8 Q52WX7 Q7T2E8	LOC100004299 arhgap35a c-met cmet fb23a02 met plxnb1b rhoac rnd1a rnd1b rnd1l rras wu:fb23a02 wu:fj98h09 wu:fk50c04 zgc:153089 zgc:92588	Danio rerio (zebrafish)
EGR2 and SOX10-mediated initiation of Schwann cell myelination	Adhesion G-protein coupled receptor G6	C6KFA3	adgrg6 gpr126	Danio rerio (zebrafish)
Platelet homeostasis	P2X purinoceptor P2X purinoceptor P2X purinoceptor P2X purinoceptor P2X purinoceptor P2X purinoceptor	B0R182 Q7SZL9 Q7SZM0 Q7SZM1 Q7SZM2 Q9I8N8	P2X.514 P2X3 fb99b08 p2rx1 p2rx2 p2rx3 p2rx3a p2rx5 p2rx7 p2rx8 p2x3 p2x5 p2xr1 p2xr2 p2xr514 p2xr7 wu:fb99b08 zP2X3 zfP2X3	Danio rerio (zebrafish)
RHOA GTPase cycle	ATP-binding cassette sub-family D member 3 Achalasia, adrenocortical insufficiency, alacrimia Actin, alpha cardiac muscle 1 Acyl-CoA-binding domain-containing protein 5A Arf-GAP with Rho-GAP domain, ANK repeat and PH domain-containing protein 2 Arhgap1 protein Caveolae-associated protein 1b Caveolin Differentially expressed in FDCP 6 homolog Disheveled-associated activator of morphogenesis 1 FAS-associated factor 2 Flotillin-2a Flotillin Formin-like protein 3 IQGAP1 protein IQGAP3 protein Junction plakoglobin a Novel vesicle-transport related protein PDZ-RhoGEF Phosphatidylinositol 3-kinase regulatory subunit alpha Phosphatidylinositol 3-kinase regulatory subunit beta Rac GTPase-activating protein 1 Ras-specific guanine nucleotide-releasing factor 2 Rho GDP dissociation inhibitor (GDI) gamma Rho GDP-dissociation inhibitor 1 Rho GTPase activating protein 4 isoform X1 Rho GTPase-activating protein 10 Rho GTPase-activating protein 28 Rho GTPase-activating protein 29 Rho GTPase-activating protein 35 Rho GTPase-activating protein 42 Rho GTPase-activating protein 5 Rho-associated protein kinase Rho-related GTP-binding protein RhoA-C Rho/rac guanine nucleotide exchange factor (GEF) 18 Rhophilin-2 SLIT-ROBO Rho GTPase-activating protein 1 isoform X1 Serine/threonine-protein kinase 10 Serine/threonine-protein kinase N2 StAR-related lipid transfer (START) domain-containing 8 Stomatin (EPB72)-like 3a T cell activation RhoGTPase-activating protein a Transferrin receptor protein 1 Triple functional domain protein Uncharacterized protein LOC550523 Unconventional myosin-IXAa Vang-like protein Vesicle-associated membrane protein 3 heme oxygenase (biliverdin-producing) protein kinase C protein kinase C	A0A0F7C9F3 A0A0F7EVQ6 A2CEA7 A4QNX9 A5PLE0 A6NA21 A7MBL8 B0S5B4 B0S6V7 B0V210 B3DHG9 B3DID0 B7ZVG9 E7EZG2 E7F079 E7F7I3 E7F7Y0 E7F8G5 F1Q8C7 F1QFY0 F1R372 Q1JPR9 Q1LUA6 Q49U75 Q502L1 Q568D8 Q568N1 Q5MPX4 Q5RHJ3 Q5U3S8 Q6IQK3 Q6IQL9 Q6NSP2 Q6NW98 Q6NXC0 Q6P3H8 Q6PCS4 Q6TNR1 Q6YLH9 Q6ZM89 Q7SY52 Q7SYB5 Q7SZQ6 Q7T2E8 Q7ZZ76 Q802W6 Q803I6 Q8AUT3 Q90Y37 Q98TZ8 Q9PVF7	ARHGDIB CAV1 IQGAP1 IQGAP3 LOC100004299 OTTDARP00000003654 SI:dZ115O7.1 SI:dZ234G15.3 SI:dZ234G15.4 SI:dZ234G15.5 SI:dZ234G15.7 aaas abcd3a acbd5 acbd5a actc2 arap2 arhgap1 arhgap10 arhgap28 arhgap29 arhgap35a arhgap42a arhgap4a arhgap5 arhgdia arhgdig arhgef11 arhgef18 arhgef18a cav1 cavin1b cb80 dZ234G15.2 daam1b daam1l def6 faf2 fb59g09 fc83b10 fd20g07 fd60b04 fj78h09 fj86f05 fk03b12 fk61c06 flot1 flot1a flot2a fmnl3 frl2 hmox2b im:7148063 im:7152854 im:7156663 iqgap1 iqgap3 jup jupa myo9aa myo9al1 ogr ogre pik3r1 pik3r2 pkn1b pkn2 pkn3 prk2 prkcl2 ptrf ptrfb racgap1 rasgrf2 reggie2 rhoac rhpn2 rock2 rock2a rok2 scfd1 si:busm1-234g15.2 si:ch211-124k10.2 si:ch211-125a15.2 si:ch211-87i20.1 si:dz234g15.2 si:dz44o19.1 sly1 srgap1b srgap2b stard8 stb2 stk10 stoml3 stoml3a stoml3b tagapa tfr1a trio vamp3 vangl1 wu:cegs2891 wu:fa96g11 wu:fb11c07 wu:fb59g09 wu:fb65b05 wu:fb92c08 wu:fc07c04 wu:fc21e04 wu:fc83b10 wu:fd20g07 wu:fd60b04 wu:fj05f11 wu:fj45g11 wu:fj78h09 wu:fj86f05 wu:fk03b12 wu:fk61c06 zgc:101668 zgc:110200 zgc:110361 zgc:136983 zgc:162917 zgc:55554 zgc:55740 zgc:63672 zgc:65966 zgc:77681 zgc:77799 zgc:77839 zgc:85686 zgc:85873 zgc:86726 zmp:0000000660	Danio rerio (zebrafish)
Opsins	Encephalopsin Melanopsin-A Opsin-1, short-wave-sensitive 1 Opsin-5 RPE-retinal G protein-coupled receptor Red-sensitive opsin-1 Red-sensitive opsin-2 Retinal pigment epithelium rhodopsin homolog/peropsin Rhodopsin	A9NJI7 E6P6L8 P35359 Q2KNE5 Q567Y2 Q66I55 Q8AYN0 Q9W6A7 Q9W6A9	Opn5m lws1 lws2 opn1lw1 opn1lw2 opn1sw1 opn1sw2 opn3 opn4 opn4a opn4d opn4m1 opn5 rdops rgr rgr1 rgra rho rrh si:ch211-105n9.2 sws1 uvops zfo2 zgc:103757 zgc:110660	Danio rerio (zebrafish)
RUNX1 regulates genes involved in megakaryocyte differentiation and platelet function	Histone H2A.V Histone H2A Histone H2A Histone H2A Histone H2B 1/2 Histone H2B 3 Histone H2B Histone H2B Histone H2B Histone H3.2 Histone H3.3 Histone H4 Paired amphipathic helix protein Sin3a Paired amphipathic helix protein Sin3b Protein arginine N-methyltransferase 6 Runt-related transcription factor Uncharacterized protein LOC100126107	A3KPR4 A5D6S0 A7E2M8 A7MCA8 B3DJF8 Q0Z946 Q1LYM8 Q4QRF4 Q5BJA5 Q5XJK2 Q6NWG4 Q6PC60 Q6PI20 Q71PD7 Q7ZTT0 Q9DGB8 R4GE15	LOC100150038 LOC100329358 LOC100331412 LOC100332229 LOC103908680 LOC108181627 LOC562770 LOC570661 LOC794549 fj63d08 h2af1al h2afvb h2afvl h2afx1 h2afza h2av h2ax1 h2az2a h2az2b h3-5 h3f3a h3f3b.1 h3f3c h3f3d hist2h2l im:6896397 prmt6 runx1 runxa si:ch211-113a14.17 si:ch211-113a14.29 si:ch211-113a14.6 si:ch73-36p18.4 si:dkey-108k21.12 si:dkey-108k21.18 si:dkey-108k21.28 si:dkey-23a13.7 si:dkey-6n6.6 sin3aa sin3b wu:fj63d08 zgc:112234 zgc:113984 zgc:173585 zgc:173587 zgc:194998 zgc:56685	Danio rerio (zebrafish)
Response to elevated platelet cytosolic Ca2+	Protein kinase C beta type	Q7SY24	prkcb1 prkcbb	Danio rerio (zebrafish)
Interleukin-38 signaling	Interleukin-1 beta Interleukin-1 receptor accessory protein-like 1-B Mitogen-activated protein kinase 8	B6ZK77 K9K4N1 Q9DGD9	il-1FMA il1fma il1rapl1b jnk1 mapk8 zmp:0000001271	Danio rerio (zebrafish)
Collagen degradation	5-phosphohydroxy-L-lysine phospho-lyase 72 kDa type IV collagenase Cationic trypsin-3 precursor Collagen alpha-1(XXVII) chain B Matrix metalloproteinase-9 Si Stromelysin-2 precursor Trypsinogen 1a Trypsinogen 1b Uncharacterized protein LOC474322 precursor	A0MSJ1 E7FBA9 E7FCZ0 F1R894 Q1RM69 Q2YDQ8 Q561Z7 Q5XIZ0 Q7SZM5 Q7T317	MMPLf ZFMMP-9 col27a1 col27a1b fj05a08 mmp2 mmp30 mmp9 phykpl prss1 prss2a prss59.1 prss59.2 si:ch73-103b2.3 si:dkey-33m11.8 try tryl wu:fa99h12 wu:fb02g06 wu:fb07b05 wu:fb57g08 wu:fb61f11 wu:fd14c02 wu:fi98c09 wu:fj05a08 wu:fk89d01 zgc:109701 zgc:136396 zgc:64165 zgc:66382	Danio rerio (zebrafish)
CRMPs in Sema3A signaling	Cell division protein kinase 5 Collapsin response mediator protein 5.1 Cyclin-dependent kinase 5 activator Dihydropyrimidinase-related protein 3 Neuropilin-1a Plexin A3 Plexin-A1 Plexin-A2 Plexin-A4 Semaphorin-3ab Tyrosine-protein kinase fynb	A0A2R8QPJ6 A8IYK2 B0S5N4 B3DH98 F1RDG9 Q52PJ5 Q52PJ7 Q6BEA0 Q8QFX6 Q9DE44 Q9W686	CRMP-5a DPYSL5 LOC568402 cdk5 cdk5r1a crmp5.1 dpysl3 dpysl5a fc28b06 fynb im:7146614 np-1 nrp1 nrp1a plxna1 plxna1b plxna2 plxna3 plxna4 sema3ab semaz1b wu:fc28b06 zgc:101604 zgc:194104 zgc:194109	Danio rerio (zebrafish)
Serine biosynthesis	Phosphoserine aminotransferase Phosphoserine phosphatase Serine incorporator 1 Serine incorporator 5	Q498V7 Q7SZW7 Q803I7 Q803X0	fi15b02 psat1 psph serinc1 serinc5 tde2 wu:fd02g01 wu:fd02g07 wu:fi15b02 zgc:112414 zgc:55738 zgc:77597 zgc:77622	Danio rerio (zebrafish)
MTOR signalling	14-3-3 protein beta/alpha-B GTP-binding protein Rheb Neutral amino acid transporter 9 Ragulator complex protein LAMTOR2 Ragulator complex protein LAMTOR3 Ragulator complex protein LAMTOR4 Ragulator complex protein LAMTOR5 Ras-related GTP-binding protein Ras-related GTP-binding protein Regulatory-associated protein of MTOR, complex 1 Serine/threonine-protein kinase TOR Target of rapamycin complex subunit lst8 non-specific serine/threonine protein kinase	A0A0R4IFI0 E7EXT6 E7FA90 Q06RG6 Q08BA4 Q0P3X8 Q502N9 Q503S6 Q6DEG4 Q6PC18 Q7T356 Q7ZUI2 Q803V5	RRAGB akt3b frap1 gbl lamtor2 lamtor3 lamtor4 lamtor5 lst8 mapksp1 mlst8 mtor rheb rptor rraga rragc rragca si:dkey-176g4.2 slc38a9 tor wu:fc22h08 wu:fc68h09 ywhab ywhab2 ywhabb zgc:111971 zgc:56499 zgc:73144	Danio rerio (zebrafish)
Axonal growth stimulation	Nerve growth factor receptor b Nerve growth factor Rho GDP-dissociation inhibitor 1 Rho-related GTP-binding protein RhoA-C	E2DGP8 Q6YBR5 Q7T2E8 Q802W6	arhgdia ngf ngfb ngfrb ngfrl rhoac wu:fa96g11 zgc:55554 zgc:77681	Danio rerio (zebrafish)
Acyl chain remodelling of PI	Cytosolic phospholipase A2 gamma-like Cytosolic phospholipase A2 Group XIIA secretory phospholipase A2 precursor Lysophospholipid acyltransferase 7 Phospholipase A2 Phospholipase B-like Retinoic acid receptor responder 3-like	A3KNJ5 B3DJ80 P50392 Q5U3S0 Q6DHK9 Q6DHQ7 Q7SZQ0	cpla2 im:7138859 leng4 mboat7 oact7 pla2g10 pla2g12a pla2g4 pla2g4a plbd1 plbd1a rarres3l zgc:101699 zgc:162119	Danio rerio (zebrafish)

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