GlyCosmos Pathways

Integrated of pathway data, containing glycoproteins and glycans obtained from Reactome and the Metabolism of carbohydrates in Escherichia coli O-antigens obtained from ECODAB. Search by pathway name, species, and protein name.

Source Last Updated
Reactome March 20, 2024
ECODAB April 1, 2019
Displaying entries 126 - 150 of 252 in total
Pathway Name Protein Name ▲ UniProt ID Gene Symbol Organism GlyTouCan ID
TCF dependent signaling in response to WNT
  • ctnnb1
Danio rerio (zebrafish)
Estrogen-dependent gene expression
  • LOC100150038
  • LOC100329358
  • LOC100331412
  • LOC100332229
  • LOC103908680
  • LOC108181627
  • LOC562770
  • LOC570661
  • LOC794549
  • carm1
  • cited1
  • erbb4
  • erbb4a
  • esr
  • esr1
  • fc15h02
  • fi05d05
  • fj36b10
  • fkd7
  • forkhead-7
  • foxa1
  • gata3
  • gb:dq017620
  • gro1
  • groucho1
  • gta3
  • gtf2a1
  • gtf2a2
  • h2af1al
  • h2afvb
  • h2afvl
  • h2afx1
  • h2afza
  • h2av
  • h2ax1
  • h2az2a
  • h2az2b
  • h3-5
  • h3f3a
  • h3f3b.1
  • h3f3c
  • h3f3d
  • hist2h2l
  • im:6896397
  • jmjd2b
  • kat2b
  • kat5a
  • kdm4b
  • nr3a1
  • nrip1a
  • pg
  • pgr
  • pr
  • si:ch211-113a14.17
  • si:ch211-113a14.29
  • si:ch211-113a14.6
  • si:ch211-124a3.4
  • si:ch211-227n20.1
  • si:ch73-36p18.4
  • si:dkey-108k21.12
  • si:dkey-108k21.18
  • si:dkey-108k21.28
  • si:dkey-23a13.7
  • tbp
  • tf2a
  • tle3b
  • wu:fc15h02
  • wu:fi05d05
  • wu:fj36b10
  • zgc:112234
  • zgc:113984
  • zgc:173585
  • zgc:173587
  • zgc:194998
  • zgc:55847
  • zgc:56685
Danio rerio (zebrafish)
Nectin/Necl trans heterodimerization
  • cadm1b
  • nectin1b
  • nectin3
  • pvrl1b
  • pvrl3l
  • sc:d0664
Danio rerio (zebrafish)
VEGFA-VEGFR2 Pathway
  • CH1073-57O22.1
  • Prkacb
  • cb153
  • cb422
  • cb660
  • cb893
  • cdc42
  • cdc42a
  • cyba
  • cybb
  • fd20h08
  • fj62g06
  • flk1b
  • fynb
  • hsp1
  • hsp25
  • hsp27
  • hspb1
  • id:ibd2821
  • im:6900512
  • im:7147817
  • itgav
  • itgb3.1
  • itgb3b
  • kdr
  • kdrb
  • kinase
  • mapk11
  • mapk12b
  • mapk14
  • mapk14b
  • mapkapk2
  • mapkapk2a
  • mapkapk3
  • ncf1
  • ncf2
  • nck1b
  • nck2b
  • pak2
  • pak2a
  • pik3ca
  • pik3cb
  • pik3r1
  • pik3r2
  • prkacab
  • prkacba
  • ptk2b
  • ptk2bb
  • ptk2bl
  • pyk2
  • rac1
  • rac1a
  • rhoac
  • rock2
  • rock2a
  • rok2
  • sb:cb660
  • si:ch211-147g19.3
  • si:dkey-14d8.5
  • si:dz198m22.1
  • src
  • vegf
  • vegfa
  • vegfaa
  • wu:fb07d08
  • wu:fb30e10
  • wu:fb65b05
  • wu:fb71h01
  • wu:fc56c10
  • wu:fd16e02
  • wu:fd20h08
  • wu:fi03a01
  • wu:fj62g06
  • zgc:103437
  • zgc:136222
  • zgc:158342
  • zgc:158405
  • zgc:55823
  • zgc:55917
  • zgc:63918
  • zgc:64054
  • zgc:64144
  • zgc:66077
  • zgc:86905
  • zgc:86934
  • zgc:91798
  • zgc:91856
  • zgc:92024
Danio rerio (zebrafish)
CRMPs in Sema3A signaling
  • CRMP-5a
  • DPYSL5
  • LOC568402
  • cdk5
  • cdk5r1a
  • crmp5.1
  • dpysl3
  • dpysl5a
  • fc28b06
  • fynb
  • im:7146614
  • np-1
  • nrp1
  • nrp1a
  • plxna1
  • plxna1b
  • plxna2
  • plxna3
  • plxna4
  • sema3ab
  • semaz1b
  • wu:fc28b06
  • zgc:101604
  • zgc:194104
  • zgc:194109
Danio rerio (zebrafish)
The retinoid cycle in cones (daylight vision)
  • CRALBPb
  • dgat2
  • dhrs3b
  • ik:tdsubc_1f3
  • lws1
  • lws2
  • opn1lw1
  • opn1lw2
  • opn1sw1
  • opn1sw2
  • rdops
  • rlbp1
  • rlbp1b
  • sws1
  • tdsubc_1f3
  • uvops
  • xx:tdsubc_1f3
  • zgc:101705
  • zgc:77766
Danio rerio (zebrafish)
Oxidative Stress Induced Senescence
  • ERK1
  • LOC100150038
  • LOC100329358
  • LOC100331412
  • LOC100332229
  • LOC103908680
  • LOC108181627
  • LOC562770
  • LOC570661
  • LOC794549
  • MKK4
  • MKK4A-l
  • MKK7
  • bmi1
  • bmi1a
  • c-Jun
  • cb1065
  • cbx2
  • cbx7a
  • cbx8b
  • drp53
  • edr2
  • eed
  • ezh2
  • fi06b09
  • fj36h07
  • fos
  • fosab
  • h2af1al
  • h2afvb
  • h2afvl
  • h2afx1
  • h2afza
  • h2av
  • h2ax1
  • h2az2a
  • h2az2b
  • h3-5
  • h3f3a
  • h3f3b.1
  • h3f3c
  • h3f3d
  • hist2h2l
  • hm:zeh0386
  • ik:tdsubc_1f2
  • im:6896397
  • im:7138386
  • jnk1
  • jun
  • map2k3
  • map2k4
  • map2k4A
  • map2k4a
  • map2k6
  • map2k7
  • mapk1
  • mapk11
  • mapk14
  • mapk14b
  • mapk3
  • mapk8
  • mapkapk2
  • mapkapk2a
  • mapkapk3
  • mapkapk5
  • mdm2
  • mdm4
  • mdmx
  • pc1
  • pcgf4a
  • ph2
  • phc2
  • psc1
  • rbb4
  • rbb4l
  • rbbp4
  • rbbp7
  • ring1b
  • rnf2
  • rps27a
  • si:ch211-113a14.17
  • si:ch211-113a14.29
  • si:ch211-113a14.6
  • si:ch211-254d18.2
  • si:ch73-36p18.4
  • si:dkey-108k21.12
  • si:dkey-108k21.18
  • si:dkey-108k21.28
  • si:dkey-23a13.7
  • suz12
  • suz12b
  • tdsubc_1f2
  • tp53
  • uba52
  • wu:fa91f08
  • wu:fb30e10
  • wu:fc56c10
  • wu:fd20e09
  • wu:fi03a01
  • wu:fi06b09
  • wu:fj36h07
  • xx:tdsubc_1f2
  • zERK1
  • zERK2
  • zgc:103563
  • zgc:110152
  • zgc:111978
  • zgc:112234
  • zgc:113984
  • zgc:123344
  • zgc:136500
  • zgc:152758
  • zgc:158342
  • zgc:173585
  • zgc:173587
  • zgc:194998
  • zgc:56685
  • zgc:65863
  • zgc:66168
  • zgc:77885
  • zgc:86905
  • zgc:92197
Danio rerio (zebrafish)
Ovarian tumor domain proteases
  • cdc48
  • drp53
  • esr
  • esr1
  • fa11a08
  • fb17f04
  • fb73f10
  • fc83f12
  • fd16b10
  • fk90e11
  • nr3a1
  • otub1a
  • otub1l
  • otud3
  • pten
  • ptenb
  • rhoac
  • rnf128
  • rnf128a
  • si:bz1g13.4
  • tp53
  • traf3
  • traf6
  • ube2d1
  • ube2d1b
  • vcp
  • wu:fa11a08
  • wu:fb17f04
  • wu:fb57h05
  • wu:fb73f10
  • wu:fc16h06
  • wu:fc83f12
  • wu:fd16b10
  • wu:fk90e11
  • yod1
  • zgc:73096
  • zgc:77843
  • zgc:85911
  • zgc:92367
  • zgc:92685
  • zranb1
  • zranb1b
Danio rerio (zebrafish)
Multifunctional anion exchangers
  • SLC26A6
  • si:dkey-31f5.2
  • slc26a11
  • slc26a2
  • slc26a3
  • slc26a3.1
  • slc26a6l
  • slc5a12
  • smctn
  • wu:fd14d06
  • zgc:64158
Danio rerio (zebrafish)
Acetylcholine Neurotransmitter Release Cycle
  • chat
  • rab3a
  • rab3ab
  • si:ch211-255d18.4
  • slc18a3a
  • syt1
  • syt1a
  • vamp2
  • wu:fj41c01
  • wu:fj61c06
  • wu:fk56d05
  • zgc:112516
  • zgc:73302
  • zgc:92899
Danio rerio (zebrafish)
Transport of bile salts and organic acids, metal ions and amine compounds
  • UT
  • ctl2
  • ctl4
  • fe01a06
  • mate1
  • mate7
  • si:dkey-175a17.4
  • slc14a2
  • slc44a2
  • slc44a4
  • slc47a1
  • slc47a4
  • wu:fe01a06
Danio rerio (zebrafish)
Collagen biosynthesis and modifying enzymes
  • COL11A1b
  • COL5A3a
  • LOC100003546x
  • LOC794872
  • alpha2(I)
  • alpha3(I)
  • bmp1a
  • cb216
  • cb479
  • cb816
  • col11a1
  • col11a1b
  • col1a1b
  • col1a2
  • col1a3
  • col27a1
  • col27a1b
  • col28a1
  • col28a1a
  • col28a1b
  • col28a1c
  • col28a1d
  • col2a1
  • col2a1a
  • col5a3
  • col5a3a
  • col8a1b
  • colgalt1
  • colgalt2
  • colgalt2b
  • coll2a1
  • diwanka
  • fb38c06
  • fb72h05
  • fc10c01
  • fc56b02
  • fj59a10
  • glt25d1
  • glt25d2
  • hm:zeh0348
  • hm:zehn2357
  • hsp
  • hsp47
  • id:ibd5060
  • im:6912725
  • lh2
  • mfn
  • p4ha1
  • p4ha1b
  • p4hb
  • pcolce2b
  • pcolceb
  • plod2
  • plod3
  • psmb3
  • serpinh1b
  • si:ch211-174d12.1
  • si:ch211-174d12.4
  • si:dkey-87l9.2
  • slc35c2
  • tld
  • tll1
  • tolloid
  • wu:fa95h05
  • wu:fa98d05
  • wu:fa99g10
  • wu:fb04c08
  • wu:fb11d06
  • wu:fb38c06
  • wu:fb54e07
  • wu:fb72f10
  • wu:fb72h05
  • wu:fb99e07
  • wu:fc10c01
  • wu:fc49g11
  • wu:fc56b02
  • wu:fc69d06
  • wu:fd02a10
  • wu:fi09e02
  • wu:fi27h11
  • wu:fj59a10
  • zehn2357
  • zgc:101868
  • zgc:194993
  • zgc:195010
  • zgc:55285
  • zgc:56058
  • zgc:63590
  • zgc:77328
  • zgc:92596
Danio rerio (zebrafish)
Assembly of collagen fibrils and other multimeric structures
  • COL11A1b
  • COL5A3a
  • alpha2(I)
  • alpha3(I)
  • col11a1
  • col11a1b
  • col1a1b
  • col1a2
  • col1a3
  • col27a1
  • col27a1b
  • col2a1
  • col2a1a
  • col5a3
  • col5a3a
  • coll2a1
  • fb38c06
  • fc10c01
  • fj59a10
  • hm:zeh0348
  • hm:zehn2357
  • si:dkey-87l9.2
  • wu:fa95h05
  • wu:fa98d05
  • wu:fa99g10
  • wu:fb04c08
  • wu:fb11d06
  • wu:fb38c06
  • wu:fb54e07
  • wu:fc10c01
  • wu:fd02a10
  • wu:fj59a10
  • zehn2357
Danio rerio (zebrafish)
Collagen chain trimerization
  • alpha2(I)
  • alpha3(I)
  • col1a1b
  • col1a2
  • col1a3
  • col27a1
  • col27a1b
  • col28a1
  • col28a1a
  • col28a1b
  • col28a1c
  • col28a1d
  • col2a1
  • col2a1a
  • coll2a1
  • fb38c06
  • fc10c01
  • fj59a10
  • hm:zeh0348
  • hm:zehn2357
  • si:ch211-174d12.1
  • si:ch211-174d12.4
  • slc35c2
  • wu:fa95h05
  • wu:fa98d05
  • wu:fa99g10
  • wu:fb04c08
  • wu:fb11d06
  • wu:fb38c06
  • wu:fb99e07
  • wu:fc10c01
  • wu:fc49g11
  • wu:fd02a10
  • wu:fi09e02
  • wu:fj59a10
  • zehn2357
  • zgc:55285
  • zgc:77328
Danio rerio (zebrafish)
Condensation of Prophase Chromosomes
  • LOC100150038
  • LOC100329358
  • LOC100331412
  • LOC100332229
  • LOC103908680
  • LOC108181627
  • LOC562770
  • LOC570661
  • LOC794549
  • SMC2L1
  • cb267
  • cb525
  • cb636
  • ccnb
  • ccnb1
  • cdc2
  • cdk1
  • cycb
  • cycb1
  • fb92e05
  • h2af1al
  • h2afvb
  • h2afvl
  • h2afx1
  • h2afza
  • h2av
  • h2ax1
  • h2az2a
  • h2az2b
  • hist2h2l
  • id:ibd2253
  • ik:tdsubc_2d1
  • im:6896397
  • kmt5aa
  • ncapd3
  • ncapg2
  • ncaph2
  • phf8
  • plk
  • plk1
  • rb1
  • set8a
  • setd8
  • setd8a
  • si:ch211-113a14.17
  • si:ch211-113a14.29
  • si:ch211-113a14.6
  • si:ch73-36p18.4
  • si:dkey-108k21.12
  • si:dkey-108k21.18
  • si:dkey-108k21.28
  • si:dkey-23a13.7
  • smc2
  • wu:fa19g04
  • wu:fb16d01
  • wu:fb16e07
  • wu:fb37g11
  • wu:fb76g03
  • wu:fb92e05
  • wu:fc30e01
  • wu:fi21c01
  • xx:tdsubc_2d1
  • zeh1628
  • zgc:112234
  • zgc:154147
  • zgc:173585
  • zgc:173587
  • zgc:194998
  • zgc:55326
  • zgc:55549
  • zgc:56685
  • zgc:92032
Danio rerio (zebrafish)
Sensory perception of sweet, bitter, and umami (glutamate) taste
  • GNB1x
  • T2R2
  • TAS1R1
  • TAS1R2a
  • TAS1R3
  • TAS2R1a
  • TAS2R1b
  • Tas1R2b
  • fb39f01
  • gnat2
  • gnb1b
  • gnb1l
  • gnb3a
  • gnb3l
  • gng13b
  • t1rc1
  • tas1r1
  • tas1r2.1
  • tas1r2.2
  • tas1r2a
  • tas1r2b
  • tas1r3
  • tas2r1a
  • tas2r200.1
  • tas2r200.2
  • tas2r2l
  • wu:fb39f01
  • wu:fb98e06
  • wu:fj09d12
  • zgc:55774
  • zgc:92641
  • zgc:92704
Danio rerio (zebrafish)
Metal ion SLC transporters
  • DMT1
  • cb426
  • cp
  • ctr-1
  • ctr1
  • fa07b10
  • fpn1
  • slc11a2
  • slc30a10
  • slc31a1
  • slc39a1
  • slc40a1
  • slc41a1
  • slc41a2b
  • wu:fa07b10
  • wu:fi23f10
  • zgc:136699
  • zgc:76839
Danio rerio (zebrafish)
Class B/2 (Secretin family receptors)
  • PTH
  • crf
  • crh
  • crhb
  • crhbp
  • pth1
  • pth1a
  • pth1r
  • pth1ra
  • pth2
  • pth2r
  • pth2ra
  • pthlh
  • pthlha
  • pthr1
  • pthr2
  • pthrp
  • si:ch211-286m4.5
  • tip39
  • zPTH1R
  • zgc:101864
  • zgc:123155
  • zgc:91905
Danio rerio (zebrafish)
Iron uptake and transport
  • Cul1
  • DMT1
  • LOC555483
  • aco1
  • cand1
  • cb141
  • cb193
  • cb426
  • cp
  • cul1a
  • cybrd1
  • fa07b10
  • fb06g09
  • fb78a05
  • fbxl5
  • fc27c04
  • fj01a11
  • fj24b11
  • fpn1
  • fth
  • fth1
  • fth1a
  • fth1b
  • fthl
  • fthl27
  • fthl28
  • fthl29
  • fthl31
  • hm:zeh0800
  • hm:zeh1145
  • hmox1
  • hmox1a
  • hmox2b
  • id:ibd5130
  • id:ibd5159
  • im:7160217
  • irp1
  • lcn15
  • nedd8l
  • pcft
  • ptgds
  • ptgdsa
  • ptgdsb
  • ptgdsb.1
  • ptgdsb.2
  • ptgdsl
  • sb:cb141
  • si:ch211-14a17.5
  • si:zc14a17.5
  • skp1
  • skp1a
  • slc11a2
  • slc39a1
  • slc40a1
  • slc46a1
  • wu:fa07b10
  • wu:fb06g09
  • wu:fb10b10
  • wu:fb11h03
  • wu:fb15e12
  • wu:fb78a05
  • wu:fc13a10
  • wu:fc27c04
  • wu:fi23f10
  • wu:fj01a11
  • wu:fj24b11
  • wu:fj24c01
  • wu:fo75b03
  • wu:fq18c10
  • zeh1145
  • zgc:136699
  • zgc:153704
  • zgc:153919
  • zgc:158768
  • zgc:194505
  • zgc:194526
  • zgc:198419
  • zgc:55729
  • zgc:55747
  • zgc:65984
  • zgc:73186
  • zgc:77500
  • zgc:92245
  • zgc:92768
Danio rerio (zebrafish)
CREB3 factors activate genes
  • creb3l3
  • creb3l3b
  • fb72d02
  • goz1
  • mbtps1
  • mbtps2
  • s1p
  • s2p
  • wu:fb72d02
  • wu:fe06e05
  • wu:fk47a09
Danio rerio (zebrafish)
RHO GTPases regulate CFTR trafficking
  • cftr
  • fe38f01
  • gopc
  • rhoq
  • wu:fe38f01
  • wu:fi15a09
  • zgc:55997
  • zgc:56254
  • zgc:65853
Danio rerio (zebrafish)
Miscellaneous transport and binding events
  • ankh
  • ankhb
  • ctns
  • lrrc8a
  • lrrc8aa
  • lrrc8ab
  • lrrc8d
  • lrrc8db
  • magt1
  • nipa1
  • nipal3
  • npal3
  • si:zfos-323e3.4
  • wu:fb18g12
  • wu:fc12a05
  • wu:fi21b10
  • zgc:101743
  • zgc:110194
  • zgc:153223
  • zgc:92224
Danio rerio (zebrafish)
Glycosphingolipid catabolism
  • NSMase
  • asah2
  • gba2
  • gba3
  • im:6912336
  • im:6912508
  • nSMase2
  • neu3.2
  • neu3.3
  • neu3.5
  • neu4
  • neuc.1
  • sb:eu489
  • si:ch73-316n6.2
  • si:dkey-11j5.6
  • smpd2
  • smpd2a
  • smpd3
  • smpd4
  • zgc:100806
  • zgc:109998
  • zgc:153998
Danio rerio (zebrafish)
N-glycan trimming in the ER and Calnexin/Calreticulin cycle
  • amfra
  • cdc48
  • engase
  • hm:zeh0386
  • ik:tdsubc_1f2
  • ngly1
  • psmc1
  • psmc1a
  • psmc1b
  • rad23ab
  • rps27a
  • saks1
  • tdsubc_1f2
  • uba52
  • ubxn1
  • vcp
  • wu:fa91f08
  • wu:fb05d04
  • wu:fj14c10
  • xx:tdsubc_1f2
  • zgc:123344
  • zgc:56516
  • zgc:66168
  • zgc:86923
Danio rerio (zebrafish)
Acyl chain remodelling of PC
  • aytl1
  • aytl2
  • cpla2
  • im:7137034
  • im:7138859
  • lpcat1
  • lpcat2
  • pla2g10
  • pla2g12a
  • pla2g3
  • pla2g4
  • pla2g4a
  • plbd1
  • plbd1a
  • rarres3l
  • tmem86a
  • tmem86b
  • zgc:101699
  • zgc:113571
  • zgc:153124
  • zgc:162119
Danio rerio (zebrafish)

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Acknowledgements

Supported by JST NBDC Grant Number JPMJND2204

Partly supported by NIH Common Fund Grant #1U01GM125267-01


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