GlyCosmos Portal

GlyCosmos Pathways

Integrated of pathway data, containing glycoproteins and glycans obtained from Reactome and the Metabolism of carbohydrates in Escherichia coli O-antigens obtained from ECODAB. Search by pathway name, species, and protein name.

Source	Last Updated
Reactome	March 20, 2024
ECODAB	April 1, 2019

Displaying entries **251 - 275** of **597** in total

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Pathway Name	Protein Name ▼	UniProt ID	Gene Symbol	Organism
Signaling by Retinoic Acid	Carnitine palmitoyltransferase I Dihydrolipoyl dehydrogenase Ecdysone-induced protein 75B, isoform B Fatty acid binding protein, isoform C Protein ultraspiracle Pyruvate dehydrogenase E1 component subunit alpha Pyruvate dehydrogenase E1 component subunit alpha Pyruvate dehydrogenase E1 component subunit beta, mitochondrial [Pyruvate dehydrogenase (acetyl-transferring)] kinase, mitochondrial dihydrolipoyllysine-residue acetyltransferase	P13055 P20153 P91622 Q7K5K3 Q7KVX1 Q8INK3 Q9V3K9 Q9VM14 Q9VVL7 Q9W4H4	BEST:GH27794 BcDNA:RH06221 BcDNA:RH46282 BcDNA:RH49003 BcDNA:SD12036 CG 7010 CG31305 CG31305-PI CPT1 CPTI CPTI-RB CT21061 Cf1 Cpt1 DLAT Dld Dmel\CG12891 Dmel\CG5261 Dmel\CG6783 Dmel\CG7010 Dmel\CG7024 Dmel\CG7430 E1-PDH E3 EP(2)0816 EP816 Eip75B FABP L(1)G0334 L(1)g0334 NR1D3 NR2B4 PDH PDH-E1 PDH-E2 PDHE1 PDHalpha Pdh Pdha Pdhb Pdk anon-EST:Posey234 anon-WO0118547.121 anon-WO0140519.12 cpt1 dCPT1 dFabp fabp gh27794 l (1) G0334 l(1)G0334 l(1)G0334-RC muc pdha usp whd	Drosophila melanogaster (fruit fly)
Physiological factors	Carboxylic ester hydrolase Carboxylic ester hydrolase Carboxylic ester hydrolase Esterase P Esterase-6 FI07649p FI12805p FI17410p1 FI17812p1 FI20018p1 Fra mauro, isoform F GH14155p GH23891p GH26575p IP12942p LD31822p LP16634p LP22773p Neprilysin 5, isoform D Neprilysin 7 Neprilysin-1 Neprilysin-2 Neprilysin-3 Neprilysin-4 Neprilysin-like 10 Neprilysin-like 13 Neprilysin-like 18 Neprilysin-like 19 Neprilysin-like 20 Neprilysin-like 21 Neprilysin-like 4 Neprilysin-like 5 Neprilysin-like 8 Protein gone early Uncharacterized protein, isoform D	A0A0B4K692 A0A6M3QH83 A1Z910 A1ZA97 A1ZA98 P08171 P18167 Q8IMQ2 Q8T062 Q9VAS0 Q9VAS1 Q9VAS2 Q9VAS4 Q9VAY0 Q9VBX6 Q9VCU1 Q9VCU2 Q9VCU3 Q9VH96 Q9VJH0 Q9VJK5 Q9VK72 Q9VLA3 Q9VME2 Q9VME3 Q9VME6 Q9VMU6 Q9VN01 Q9VYJ1 Q9W436 Q9W4B8 Q9W5Y0 Q9XZ14 Q9Y136 Q9Y141	BEST:GH06882 BEST:GH09377 BcDNA.GH05741 BcDNA:GH05741 BcDNA:GH07188 CG13650-RB CG13981 CG15485-RA CG18592 CG33295 CG3775-RA CG42370-RA CG4382-RB CG4721-RA CG9508 CG9511 CT26920 DmJhe DmeNEP5 Dmel\CG12869 Dmel\CG13283 Dmel\CG13650 Dmel\CG14523 Dmel\CG14526 Dmel\CG14527 Dmel\CG14528 Dmel\CG14529 Dmel\CG15485 Dmel\CG31918 Dmel\CG3239 Dmel\CG3775 Dmel\CG42370 Dmel\CG4382 Dmel\CG4580 Dmel\CG4721 Dmel\CG4723 Dmel\CG4725 Dmel\CG4757 Dmel\CG5527 Dmel\CG6265 Dmel\CG8358 Dmel\CG8424 Dmel\CG8425 Dmel\CG8550 Dmel\CG9505 Dmel\CG9507 Dmel\CG9780 EST6 Est-6 Est-P EstP GH05702 GH05741 JH JHE JHEdup Jhe Jhedup Jhedup-RA NEP5 Nep1 Nep2 Nep3 Nep4 Nep5 Nep6 Nep7 Nepl1 Nepl10 Nepl11 Nepl12 Nepl13 Nepl14 Nepl15 Nepl16 Nepl17 Nepl18 Nepl19 Nepl20 Nepl21 Nepl3 Nepl4 Nepl5 Nepl6 Nepl7 Nepl8 Nepl9 anon-EST:Posey132 anon-WO0118547.477 frma goe jhe jhedup nep5	Drosophila melanogaster (fruit fly)
Calnexin/calreticulin cycle	Calnexin 99A, isoform A Calreticulin Protein disulfide-isomerase (Fragment)	P29413 Q3YMU0 Q9VAL7	Calr Cnx Cnx99A Cnx99A-RD Cnx99a Crc D-ERp60 Dmel\CG11958 Dmel\CG8983 ERp60 ERp60-RA Erp60 Ov6 anon-EST:fe3D9 cnx cnx99A dERp60	Drosophila melanogaster (fruit fly)
Inactivation, recovery and regulation of the phototransduction cascade	Calmodulin-lysine N-methyltransferase Cyclic nucleotide-gated cation channel subunit A Cyclic nucleotide-gated ion channel subunit B, isoform A FI12009p FI14603p Guanine nucleotide-binding protein subunit gamma-1 Guanine nucleotide-binding protein subunit gamma Guanylate cyclase 32E Guanylate cyclase Guanylate cyclase Protein farnesyltransferase subunit beta Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha Receptor-type guanylate cyclase Gyc76C Uncharacterized protein, isoform E	A0A0B4K838 A0A4D6K026 A0A4P7VAE4 A1ZB47 A4V0X6 P38040 Q07553 Q24278 Q7JQ32 Q8IQ15 Q9VEV7 Q9VR31 Q9VU79 Q9W2D5	38C.42 CBP1 CG10022 CG10947-RB CG12584 CG12585 CG13530 CG14501 CG14652 CG15844 CG31960-RA CG33958-RA CG3536 CG41467 CG5719 CG9783 Cncbeta Cng CngA CngB Dmel\CG10738 Dmel\CG10947 Dmel\CG17565 Dmel\CG17922 Dmel\CG2976 Dmel\CG31960 Dmel\CG33958 Dmel\CG34357 Dmel\CG42260 Dmel\CG43324 FNTA FNTB Fnta Fntb G1 GC GYC Ggamma1 Gyc32E Gyc76C dCNCbeta dmCNG4 dmCNGB lincRNA.378	Drosophila melanogaster (fruit fly)
HSF1-dependent transactivation	Calcium/calmodulin-dependent protein kinase type II alpha chain GEO09660p1 Heat shock 70 kDa protein cognate 4 Heat shock factor protein Heat shock protein 83 LOBE Protein LST8 homolog Protein lethal(2)essential for life Raptor, isoform B Serine/threonine-protein kinase mTor	P02828 P11147 P22813 P82147 Q00168 Q7JXA2 Q9VK45 Q9VK90 Q9W328 Q9W437	4320 BcDNA:RE36920 CG10109 CaM CaMKII Dmel\CG4320 Dmel\CG46146 Dmel\CG5446 Hsc4 Hsc70-4 Hsf Hsp82 Hsp83 Hsp90 L Lst8 PRAS40 Raptor Tor dPRAS40 dRAPTOR dRap dRaptor l(2)efl mTor raptor raptor/CG4320	Drosophila melanogaster (fruit fly)
CLEC7A (Dectin-1) induces NFAT activation	Calcineurin subunit B type 2 FI14603p NFAT nuclear factor, isoform B Serine/threonine-protein phosphatase 2B catalytic subunit 1 Serine/threonine-protein phosphatase 2B catalytic subunit 2 Serine/threonine-protein phosphatase 2B catalytic subunit 3	A8JUV3 P48456 Q24214 Q27889 Q8IQ15 Q9VXF1	CBP1 CG10022 CG31960-RA CNA1 CNB2 CanA-14F CanA1 CanB2 CnnA14D Dmel\CG11172 Dmel\CG31960 EP1335 MESR1 NF-AT5 NFAT NFAT5 Nfat Pp2B-14D PpD14 dNFAT	Drosophila melanogaster (fruit fly)
Calcineurin activates NFAT	Calcineurin subunit B type 2 FI14603p NFAT nuclear factor, isoform B Peptidyl-prolyl cis-trans isomerase Fkbp12 Serine/threonine-protein phosphatase 2B catalytic subunit 1 Serine/threonine-protein phosphatase 2B catalytic subunit 2 Serine/threonine-protein phosphatase 2B catalytic subunit 3	A8JUV3 P48375 P48456 Q24214 Q27889 Q8IQ15 Q9VXF1	CBP1 CG10022 CG31960-RA CNA1 CNB2 CanA-14F CanA1 CanB2 CnnA14D Dmel\CG11172 Dmel\CG31960 EP1335 FK506-bp2 Fkbp12 MESR1 NF-AT5 NFAT NFAT5 Nfat Pp2B-14D PpD14 dNFAT	Drosophila melanogaster (fruit fly)
Homo-/heterophilic binding of transmembrane components	Cadherin-related tumor suppressor Frizzled GRUNGE Protein dachsous Protocadherin-like wing polarity protein stan Vang-like protein	O45030 P18537 P33450 Q24292 Q9NHX6 Q9V5N8	Gug Vang ds fmi ft fz stan stbm	Drosophila melanogaster (fruit fly)
Subcellular localisation of D	Cadherin-related tumor suppressor Discs overgrown protein kinase Protein dachsous Unconventional myosin	O76324 P33450 Q24292 Q95VU9	d dachs dbt dco ds ft	Drosophila melanogaster (fruit fly)
DS ligand bound to FT receptor	Cadherin-related tumor suppressor Death-associated inhibitor of apoptosis 1 Discs overgrown protein kinase LD40758p MOB kinase activator-like 1 Protein dachsous Protein limb expression 1 homolog Scaffold protein salvador Serine/threonine-protein kinase Warts Serine/threonine-protein kinase hippo	O76324 P33450 Q24292 Q24306 Q8T0S6 Q95RA8 Q9VA38 Q9VCQ7 Q9VCR6 Q9VKY1	Diap1 Dmel\CG4656 Iap1 RASSF Rassf SHRP dRASSF dRASSF1 dRassf dbt dco dmRASSF ds ft hpo lft mats rassf sav th wts	Drosophila melanogaster (fruit fly)
Phase 0 - rapid depolarisation	Ca2+-channel-protein-beta-subunit, isoform L Ca[2+] channel Muscle-specific alpha2/delta subunit, isoform A GH12419p1 Stolid, isoform H Straightjacket, isoform C Voltage-dependent calcium channel type D subunit alpha-1	A0A0B4K866 M9PD84 Q24270 Q8IP22 Q9VRE6 X2J9Z3	2L5 BG:DS07108.2 BG:DS07473.1 CG10985 CG11568 CG11569 CG12455 CG14922 CG14923 CG32514 CG32514-ORFA CG33305 CG6320 Ca-Ma2d Ca-alpha1D Ca-beta CaBeta DS07108.2 DS07473.1A DmCa1beta Dmel\CG12295 Dmel\CG33670 Dmel\CG42403 Dmel\CG42817 Dmel\CG4587 Dro STG1 DroCa1 Ma2/d STG1 Stg1 alpha2delta-3 alpha[[2]]delta alpha[[2]]delta-3 ca-beta dalpha[[2]]delta-3 dmcab1 l(2)04008 l(2)35Fa l(2)k10814 mdcds_3066 stg1 stg1-RA stj stol	Drosophila melanogaster (fruit fly)
Phase 2 - plateau phase	Ca2+-channel-protein-beta-subunit, isoform L Ca[2+] channel Muscle-specific alpha2/delta subunit, isoform A GH12419p1 Stolid, isoform H Straightjacket, isoform C Voltage-dependent calcium channel type D subunit alpha-1	A0A0B4K866 M9PD84 Q24270 Q8IP22 Q9VRE6 X2J9Z3	2L5 BG:DS07108.2 BG:DS07473.1 CG10985 CG11568 CG11569 CG12455 CG14922 CG14923 CG32514 CG32514-ORFA CG33305 CG6320 Ca-Ma2d Ca-alpha1D Ca-beta CaBeta DS07108.2 DS07473.1A DmCa1beta Dmel\CG12295 Dmel\CG33670 Dmel\CG42403 Dmel\CG42817 Dmel\CG4587 Dro STG1 DroCa1 Ma2/d STG1 Stg1 alpha2delta-3 alpha[[2]]delta alpha[[2]]delta-3 ca-beta dalpha[[2]]delta-3 dmcab1 l(2)04008 l(2)35Fa l(2)k10814 mdcds_3066 stg1 stg1-RA stj stol	Drosophila melanogaster (fruit fly)
Presynaptic depolarization and calcium channel opening	Ca2+-channel-protein-beta-subunit, isoform L Ca[2+] channel Muscle-specific alpha2/delta subunit, isoform A GH12419p1 Stolid, isoform H Straightjacket, isoform C Voltage-dependent calcium channel type A subunit alpha-1	A0A0B4K866 M9PD84 P91645 Q8IP22 Q9VRE6 X2J9Z3	2L5 BG:DS07108.2 BG:DS07473.1 CG10985 CG11568 CG11569 CG12455 CG14922 CG14923 CG32514 CG32514-ORFA CG33305 CG6320 Ca-Ma2d Ca-beta CaBeta DS07108.2 DS07473.1A DmCa1beta Dmel\CG12295 Dmel\CG33670 Dmel\CG42403 Dmel\CG42817 Dmel\CG4587 Dro STG1 Ma2/d STG1 Stg1 alpha2delta-3 alpha[[2]]delta alpha[[2]]delta-3 ca-beta cac dalpha[[2]]delta-3 dmcab1 l(2)04008 l(2)k10814 mdcds_3066 nbA nonB stg1 stg1-RA stj stol	Drosophila melanogaster (fruit fly)
Depolymerization of the Nuclear Lamina	CTD nuclear envelope phosphatase 1 homolog Cyclin-dependent kinase 1 G2/mitotic-specific cyclin-B Lamin Dm0 Lamin-C Nuclear envelope phosphatase-regulatory subunit 1 homolog Protein kinase C, brain isozyme Protein kinase C, eye isozyme Yuri gagarin, isoform B phosphatidate phosphatase	P05130 P08928 P13677 P20439 P23572 Q03427 Q8SXP0 Q8T0B1 Q9V435 Q9VRG7	BG:DS05639.1 BG:DS07851.11 CG11860 CG12635 CG8009 Cdk1 CycB DLpin Dd DmLpin Dmel\CG31732 Dmel\CG8709 EP2431 LIPIN Lam LamC Lpin PKC1 PKC2 Pkc53E Yuri anon-WO0118547.133 cdc2 dLipin inaC l(1)G0269 yuri	Drosophila melanogaster (fruit fly)
EGFR downregulation	CIN85 and CD2AP related, isoform J Cdc42 homolog E3 ubiquitin-protein ligase CBL Endophilin-A Epidermal growth factor receptor pathway substrate clone 15, isoform A Epidermal growth factor receptor FI19443p1 GH17761p Growth factor receptor-bound protein 2 Hepatocyte growth factor-regulated tyrosine kinase substrate Jak pathway signal transduction adaptor molecule Low-density lipoprotein receptor-related protein Polyubiquitin Protein cueball Protein sprouty Rho-type guanine nucleotide exchange factor, isoform F Tyrosine-protein phosphatase Ubiquitin-like domain-containing protein Ubiquitin-ribosomal protein eS31 fusion protein	A0A0B4KI34 A1Z9D7 A8DZ19 O44783 P04412 P0CG69 P15357 P40793 Q08012 Q8T390 Q95RU0 Q960X8 Q9VS85 Q9VSK2 Q9W0R3 Q9W111 Q9W418 Q9XTL2 R9PY16	0110/27 38C.40 ARHGEF7 Aa2/2 Arr BEST:CK00539 BcDNA:GH03163 CBL CD2AP CG11316 CG1408 CG18282 CG7043 CK00539 CR11700 CR32744 CT15575 Cbl Cdc42 Cindr D-Cbl D-Cbl L D-CblL D-cbl D-cblL D-cblS DCbl DER Dcbl Dm Arr DmUb DmUbi-p5E Dmel\CG10043 Dmel\CG11700 Dmel\CG1228 Dmel\CG16932 Dmel\CG31012 Dmel\CG32744 Dmel\CG5912 Dmel\CG6521 Dmel\CG7037 Dmel\CG8532 DrhoGEF DrtGEF Dstam Dv-Cbl Dv-cbl E(faf)bE25 E(sev)2B EH1 EPS-15 EPS15 ESTS:143G11T ESTS:199A6T Egfr EndoA Eps-15 Eps15 Epsin F165 Grb2 Hrs Iqf Irp6 LRP LRP/Arr LRP5/6 LRP6 LqF Lqf MEG1 Meg PTP-meg PTPMEG Pix Ptpmeg Ptpmeg-RC Rho/RacGEF RhoGEF RpS27A RtGEF STAM Stam Stam1 UB UB3-D UBI-F80 Ub Ubi Ubi-m Ubi-p5E Ubi-p5E5 Ubi-p63E Ubiq Ubiquitin anon-WO0118547.211 anon-WO0118547.239 anon-WO0118547.68 anon-WO0118547.85 anon-sts41 arr arr-RA beta-PIX betaPIX c-erbB cbl cindr cue d-cbl dCbl dEpsin dMEG1 dPIX dPix dPtpmeg dpix dptpmeg drk dstam endo eps-15 eps15 epsin i31 l(2)k08131 l(3)S011027 lqf lqf-RE pix poly-ub ptmpeg ptpmeg rhoGEF rtGEF scc stam sty top v-Cbl	Drosophila melanogaster (fruit fly)
Pre-NOTCH Processing in Golgi	CHOp24, isoform A Delta-like protein Protein crumbs Protein serrate	P10040 P18168 Q9VZ44 Q9W4K0	10 Bd C901 C901-RA CHOp24 CT4052 Dmel\CG1567 Dmel\CG3564 Emp24 Ser anon-10Ab c901 cDNA 901 crb emp24 p24 p24/p24beta1	Drosophila melanogaster (fruit fly)
SUMOylation of RNA binding proteins	CG10206-PA Dorsal interacting protein 4 E3 ubiquitin-protein ligase RING1 Heterogeneous nuclear ribonucleoprotein K, isoform C Polycomb group protein Pc Polycomb group protein Psc Polycomb protein Scm Polyhomeotic distal, isoform A Polyhomeotic-proximal chromatin protein Small ubiquitin-related modifier	A1ZBW0 O97102 P26017 P35820 P39769 Q7KNM2 Q9VB08 Q9VHA0 Q9VM69 Q9W523	2/30 BL Bancal Bl DNOP5 DROZFP DUbc9 Dm0342 DmSUMO-1 DmSmt3 DmUbc9 Dmel\CG10206 Dmel\CG13425 Dmel\CG3018 Dmel\CG3895 Dmel\CG4494 Dmsmt3 Dmubc9 Dnop5 EG:BACN25G24.3 FBgn0010602 HnRNP-K Hrb57A Iwr Lwr NOP5 Nop5 PH PH-d PHD Pc Ph Ph-d PhD Psc Q18 SMT3 SUMO Sce Scm Smt3 Sumo UBC9 Ubc 9 Ubc-9 Ubc9 Ubc9/Lwr UbcD9 anon-EST:Posey240 bl bl-RC dSUMO dSmt3 dUBC9 dUbc9 dhnRNP K dip4 dsmt3 hbl hnRNP K hnRNP-A1L i105 i56 l(2)01519 l(2)02858 l(2)04493 l(2)05486 l(2)05487 l(2)SH0182 l(2)SH2 0182 l(2)k08305 lwr nop5 ph ph-D ph-d ph-p ph[D] ph[d] phd phm semi smt3 sumo ubc9	Drosophila melanogaster (fruit fly)
RNA Pol II CTD phosphorylation and interaction with CE	CDK-activating kinase assembly factor MAT1 Cyclin-H Cyclin-dependent kinase 7 DNA-directed RNA polymerase II subunit RPB11 DNA-directed RNA polymerase II subunit RPB1 DNA-directed RNA polymerase II subunit RPB2 DNA-directed RNA polymerase II subunit RPB7 DNA-directed RNA polymerase II subunit RPB9 DNA-directed RNA polymerase II subunit Rpb4 DNA-directed RNA polymerases I, II, and III subunit RPABC2 DNA-directed RNA polymerases I, II, and III subunit RPABC3 DNA-directed RNA polymerases I, II, and III subunit RPABC5 GEO11084p1 GH07456p General transcription and DNA repair factor IIH helicase subunit XPD General transcription and DNA repair factor IIH helicase/translocase subunit XPB General transcription and DNA repair factor IIH subunit TFB5 General transcription factor IIF subunit 1 General transcription factor IIF subunit 2 General transcription factor IIH subunit 1 General transcription factor IIH subunit 3 General transcription factor IIH subunit 4 General transcription factor IIH subunit RPB5 homolog Transcription elongation factor SPT5 mRNA cap guanine-N7 methyltransferase mRNA-capping enzyme	B7Z018 O76513 O97183 P04052 P08266 P36958 P41900 Q02870 Q05913 Q24216 Q24320 Q6IGE3 Q7JZF5 Q7KPG8 Q7KVP9 Q960E8 Q9V460 Q9VC49 Q9VEA5 Q9VFB5 Q9VJE4 Q9VJQ4 Q9VNP8 Q9VNZ3 Q9VPX4 Q9VUR1 Q9VY44	142767_at 152117_at 154538_at AT-1 BG:DS00941.10 CCNH CD 7 CDK7 CG14037 CG6572 Cdk7 CycH D-rpII33 DhR3 DhXPD DmCDK7 DmCdk7 DmMO15 DmMo15 DmRPB5 DmXPD Dmcdk7 Dmel\CG11115 Dmel\CG11246 Dmel\CG11979 Dmel\CG1810 Dmel\CG31155 Dmel\CG3319 Dmel\CG34186 Dmel\CG42373 Dmel\CG5041 Dmel\CG7405 Dmel\CG7614 Dmel\CG7764 Dmel\CG7885 Dmel\CG9433 Dmp34 Dmp52 Dmp8 ERCC2 ERCC3 MAT1 Mat1 Mo15 PIR Pol II Pol II RPII33 PolII PolIIo Polr2A Polr2B Polr2C Polr2D Polr2E Polr2F Polr2G Polr2H Polr2I Polr2J Polr2K Polr2L RNA Pol II RNA pol II RNA polII RNAP RP140 RPB1 RPB12 RPB2 RPB3 RPB5 RPB6 RPB7 RPB8 Rbp3 Rnmt RpABC14 RpII140 RpII15 RpII18 RpII215 RpII33 Rpb10 Rpb11 Rpb12 Rpb3 Rpb4 Rpb5 Rpb7 Rpb8 Rpll33 SSL1 Spt5 Ssl1 TFB2 TFB4 TFB5 TFB5 (uORF) TFIIF30 TTDA TfIIFalpha TfIIFbeta Tfb1 Tfb2 Tfb4 Tfb5 Tfb5-RB XPD XPD/ERCC2 Xpd anon-WO0118547.648 br17 br9 cdk-7 cdk7 dCdk7 dRpb7 hay l(2)34Dg l(2)SH1279 l(2)SH2 1279 l(2)SH2 2137 l(2)SH2137 l(2)br17 l(2)br9 l(2)k05605 l(3)E35 l34Dg lincRNA.843 mRNA-cap mRNA-capping-enzyme mrn ms(3)nc16 nc16 p34 p40[MO15] p44 p52 p8 pol II polII rpII33 rpb3 ssl1 uORF xpd	Drosophila melanogaster (fruit fly)
mRNA Capping	CDK-activating kinase assembly factor MAT1 Cyclin-H Cyclin-dependent kinase 7 DNA-directed RNA polymerase II subunit RPB11 DNA-directed RNA polymerase II subunit RPB1 DNA-directed RNA polymerase II subunit RPB2 DNA-directed RNA polymerase II subunit RPB7 DNA-directed RNA polymerase II subunit RPB9 DNA-directed RNA polymerase II subunit Rpb4 DNA-directed RNA polymerases I, II, and III subunit RPABC2 DNA-directed RNA polymerases I, II, and III subunit RPABC3 DNA-directed RNA polymerases I, II, and III subunit RPABC5 GEO11084p1 GH07456p General transcription and DNA repair factor IIH helicase subunit XPD General transcription and DNA repair factor IIH helicase/translocase subunit XPB General transcription and DNA repair factor IIH subunit TFB5 General transcription factor IIF subunit 1 General transcription factor IIF subunit 2 General transcription factor IIH subunit 1 General transcription factor IIH subunit 3 General transcription factor IIH subunit 4 General transcription factor IIH subunit Nuclear cap-binding protein subunit 1 Nuclear cap-binding protein subunit 2 RPB5 homolog Transcription elongation factor SPT5 mRNA cap guanine-N7 methyltransferase mRNA-capping enzyme	B7Z018 O76513 O97183 P04052 P08266 P36958 P41900 Q02870 Q05913 Q24216 Q24320 Q6IGE3 Q7JZF5 Q7K4N3 Q7KPG8 Q7KVP9 Q960E8 Q9V3L6 Q9V460 Q9VC49 Q9VEA5 Q9VFB5 Q9VJE4 Q9VJQ4 Q9VNP8 Q9VNZ3 Q9VPX4 Q9VUR1 Q9VY44	142767_at 152117_at 154538_at AT-1 BG:DS00941.10 CCNH CD 7 CDK7 CG14037 CG6572 Cbp20 Cbp80 Cdk7 CycH D-rpII33 DhR3 DhXPD DmCDK7 DmCdk7 DmMO15 DmMo15 DmRPB5 DmXPD Dmcdk7 Dmel\CG11115 Dmel\CG11246 Dmel\CG11979 Dmel\CG1810 Dmel\CG31155 Dmel\CG3319 Dmel\CG34186 Dmel\CG42373 Dmel\CG5041 Dmel\CG7405 Dmel\CG7614 Dmel\CG7764 Dmel\CG7885 Dmel\CG9433 Dmp34 Dmp52 Dmp8 ERCC2 ERCC3 MAT1 Mat1 Mo15 PIR Pol II Pol II RPII33 PolII PolIIo Polr2A Polr2B Polr2C Polr2D Polr2E Polr2F Polr2G Polr2H Polr2I Polr2J Polr2K Polr2L RNA Pol II RNA pol II RNA polII RNAP RP140 RPB1 RPB12 RPB2 RPB3 RPB5 RPB6 RPB7 RPB8 Rbp3 Rnmt RpABC14 RpII140 RpII15 RpII18 RpII215 RpII33 Rpb10 Rpb11 Rpb12 Rpb3 Rpb4 Rpb5 Rpb7 Rpb8 Rpll33 SSL1 Spt5 Ssl1 TFB2 TFB4 TFB5 TFB5 (uORF) TFIIF30 TTDA TfIIFalpha TfIIFbeta Tfb1 Tfb2 Tfb4 Tfb5 Tfb5-RB XPD XPD/ERCC2 Xpd anon-WO0118547.648 br17 br9 cdk-7 cdk7 dCdk7 dRpb7 hay l(2)34Dg l(2)SH1279 l(2)SH2 1279 l(2)SH2 2137 l(2)SH2137 l(2)br17 l(2)br9 l(2)k05605 l(3)E35 l34Dg lincRNA.843 mRNA-cap mRNA-capping-enzyme mrn ms(3)nc16 nc16 p34 p40[MO15] p44 p52 p8 pol II polII rpII33 rpb3 ssl1 uORF xpd	Drosophila melanogaster (fruit fly)
Formation of the Early Elongation Complex	CDK-activating kinase assembly factor MAT1 Cyclin-H Cyclin-dependent kinase 7 DNA-directed RNA polymerase II subunit RPB11 DNA-directed RNA polymerase II subunit RPB1 DNA-directed RNA polymerase II subunit RPB2 DNA-directed RNA polymerase II subunit RPB7 DNA-directed RNA polymerase II subunit RPB9 DNA-directed RNA polymerase II subunit Rpb4 DNA-directed RNA polymerases I, II, and III subunit RPABC2 DNA-directed RNA polymerases I, II, and III subunit RPABC3 DNA-directed RNA polymerases I, II, and III subunit RPABC5 GEO11084p1 GH07456p General transcription and DNA repair factor IIH helicase subunit XPD General transcription and DNA repair factor IIH helicase/translocase subunit XPB General transcription and DNA repair factor IIH subunit TFB5 General transcription factor IIF subunit 1 General transcription factor IIF subunit 2 General transcription factor IIH subunit 1 General transcription factor IIH subunit 3 General transcription factor IIH subunit 4 General transcription factor IIH subunit Negative elongation factor A Negative elongation factor B Negative elongation factor D Negative elongation factor E Nuclear cap-binding protein subunit 1 Nuclear cap-binding protein subunit 2 RNA polymerase II subunit A C-terminal domain phosphatase RPB5 homolog Transcription elongation factor SPT4 Transcription elongation factor SPT5	B7Z018 O76513 O97183 P04052 P08266 P36958 P41900 P92204 Q02870 Q05913 Q24134 Q24216 Q24320 Q6IGE3 Q7JZF5 Q7K4N3 Q7KPG8 Q7KVP9 Q86NP2 Q960E8 Q9TVQ5 Q9V3L6 Q9V460 Q9VC49 Q9VEA5 Q9VFB5 Q9VJE4 Q9VNP8 Q9VNZ3 Q9VPX4 Q9VUR1 Q9W147 Q9Y113	142767_at 152117_at 154538_at 21483550 AT-1 BG:DS00941.10 CCNH CD 7 CDK7 CG14037 CG6572 Cbp20 Cbp80 Cdk7 CycH D-rpII33 DhR3 DhXPD DmCDK7 DmCdk7 DmFcp1 DmMO15 DmMo15 DmRPB5 DmXPD Dmcdk7 Dmel\CG11115 Dmel\CG11246 Dmel\CG11979 Dmel\CG12252 Dmel\CG31155 Dmel\CG3319 Dmel\CG34186 Dmel\CG42373 Dmel\CG5041 Dmel\CG7405 Dmel\CG7614 Dmel\CG7764 Dmel\CG7885 Dmel\CG9433 Dmfcp1 Dmp34 Dmp52 Dmp8 ERCC2 ERCC3 Fcp1 MAT1 Mat1 Mo15 NELF-B NELF-D Nelf-A Nelf-E Pol II Pol II RPII33 PolII PolIIo Polr2A Polr2B Polr2C Polr2D Polr2E Polr2F Polr2G Polr2H Polr2I Polr2J Polr2K Polr2L RNA Pol II RNA pol II RNA polII RNAP RP140 RPB1 RPB12 RPB2 RPB3 RPB5 RPB6 RPB7 RPB8 Rbp3 RpABC14 RpII140 RpII15 RpII18 RpII215 RpII33 Rpb10 Rpb11 Rpb12 Rpb3 Rpb4 Rpb5 Rpb7 Rpb8 Rpll33 SSL1 Spt5 Ssl1 TFB2 TFB4 TFB5 TFB5 (uORF) TFIIF30 TH1 TTDA TfIIFalpha TfIIFbeta Tfb1 Tfb2 Tfb4 Tfb5 Tfb5-RB XPD XPD/ERCC2 Xpd anon-66Da anon-WO0118547.648 br17 cdk-7 cdk7 dCdk7 dRpb7 fcp1 hay l(2)34Dg l(2)SH1279 l(2)SH2 1279 l(2)SH2 2137 l(2)SH2137 l(2)br17 l(2)k05605 l(3)E35 l34Dg lincRNA.843 mrn ms(3)nc16 nc16 p34 p40[MO15] p44 p52 p8 pol II polII rpII33 rpb3 spt4 ssl1 uORF xpd	Drosophila melanogaster (fruit fly)
RNA Polymerase I Promoter Escape	CDK-activating kinase assembly factor MAT1 Cyclin-H Cyclin-dependent kinase 7 DNA-directed RNA polymerase I subunit RPA1 DNA-directed RNA polymerase I subunit RPA2 DNA-directed RNA polymerase subunit DNA-directed RNA polymerases I, II, and III subunit RPABC2 DNA-directed RNA polymerases I, II, and III subunit RPABC3 DNA-directed RNA polymerases I, II, and III subunit RPABC5 FI06908p GEO11084p1 General transcription and DNA repair factor IIH helicase subunit XPD General transcription and DNA repair factor IIH helicase/translocase subunit XPB General transcription and DNA repair factor IIH subunit TFB5 General transcription factor IIH subunit 1 General transcription factor IIH subunit 3 General transcription factor IIH subunit 4 General transcription factor IIH subunit Histone H2A.v Histone H2A Histone H2A Histone H2B Histone H3.3A Histone H3.3B Histone H3 Histone H4 LD10456p LD14127p LP03982p RNA polymerase I subunit F RPB5 homolog TATA box-binding protein-associated factor RNA polymerase I subunit B TATA-box-binding protein TBP-related factor	B7Z018 C0HL66 C0HL67 O76513 P02283 P02299 P08985 P20028 P20227 P84040 P84051 P91875 Q02870 Q24216 Q24320 Q27896 Q4AB57 Q6IGE3 Q7JZF5 Q7KPG8 Q7KVP9 Q960E8 Q9V9M6 Q9VC49 Q9VD81 Q9VE94 Q9VH20 Q9VM72 Q9VMX3 Q9VNP8 Q9VNZ3 Q9VPX4 Q9VUR1 Q9W396	142767_at 154538_at AC40 AT-1 BEST:CK01205 BEST:GH23590 BTF1 CCNH CD 7 CDK7 CG14037 CG16938 CG5951 CK01205 Cdk7 CycH DhR3 DhXPD DmCDK7 DmCdk7 DmMO15 DmMo15 DmRPB5 DmXPD Dmcdk7 Dmel\CG11115 Dmel\CG11246 Dmel\CG11979 Dmel\CG13418 Dmel\CG13773 Dmel\CG18600 Dmel\CG3278 Dmel\CG3319 Dmel\CG33853 Dmel\CG33856 Dmel\CG33859 Dmel\CG34186 Dmel\CG3756 Dmel\CG42373 Dmel\CG5041 Dmel\CG7041 Dmel\CG7405 Dmel\CG7614 Dmel\CG7764 Dmel\CG9433 Dmp34 Dmp52 Dmp8 ERCC2 ERCC3 H2AvD H2a H4 H4r HP1 HP1B HP1b HP1b-RA His2A His2A:CG31618 His2A:CG33808 His2A:CG33814 His2A:CG33817 His2A:CG33820 His2A:CG33823 His2A:CG33826 His2A:CG33829 His2A:CG33832 His2A:CG33835 His2A:CG33838 His2A:CG33841 His2A:CG33844 His2A:CG33847 His2A:CG33850 His2A:CG33853 His2A:CG33856 His2A:CG33859 His2A:CG33862 His2A:CG33865 His2Av His2AvD His2B His2B:CG17949 His2B:CG33868 His2B:CG33870 His2B:CG33872 His2B:CG33874 His2B:CG33876 His2B:CG33878 His2B:CG33880 His2B:CG33882 His2B:CG33884 His2B:CG33886 His2B:CG33888 His2B:CG33890 His2B:CG33892 His2B:CG33894 His2B:CG33896 His2B:CG33898 His2B:CG33900 His2B:CG33902 His2B:CG33904 His2B:CG33906 His2B:CG33908 His2B:CG33910 His3 His3.3A His3.3B His3:CG31613 His3:CG33803 His3:CG33806 His3:CG33809 His3:CG33812 His3:CG33815 His3:CG33818 His3:CG33821 His3:CG33824 His3:CG33827 His3:CG33830 His3:CG33833 His3:CG33836 His3:CG33839 His3:CG33842 His3:CG33845 His3:CG33848 His3:CG33851 His3:CG33854 His3:CG33857 His3:CG33860 His3:CG33863 His3:CG33866 His4 His4:CG31611 His4:CG33869 His4:CG33871 His4:CG33873 His4:CG33875 His4:CG33877 His4:CG33879 His4:CG33881 His4:CG33883 His4:CG33885 His4:CG33887 His4:CG33889 His4:CG33891 His4:CG33893 His4:CG33895 His4:CG33897 His4:CG33899 His4:CG33901 His4:CG33903 His4:CG33905 His4:CG33907 His4:CG33909 His4r Hp1b MAT1 Mat1 Mo15 Polr1B Polr1C Polr1E Polr1F Polr1H Polr2E Polr2F Polr2H Polr2K Polr2L RP135 RPA1 RPA43 RPB12 RPB5 RPB6 RPB8 RPC40 RpABC14 RpI1 RpI12 RpI12-RA RpI135 RpII18 Rpb10 Rpb12 Rpb5 Rpb8 SSL1 Ssl1 TAF1B TFB2 TFB4 TFB5 TFB5 (uORF) TFIID TIF-1A TIF-IA TIf-IA TTDA Tbp Tfb1 Tfb2 Tfb4 Tfb5 Tfb5-RB Tif-1A Tif-1a Tif-IA TifIA Trf XPD XPD/ERCC2 Xpd anon-WO0118547.648 cdk-7 cdk7 dA43 dCdk7 dTIF-IA hay hp1b l(2)SH1279 l(2)SH2 1279 l(2)SH2 2137 l(2)SH2137 l(3)E35 lincRNA.843 mrn ms(3)nc16 nc16 p34 p40[MO15] p44 p52 p8 ssl1 tif1a uORF xpd	Drosophila melanogaster (fruit fly)
TP53 Regulates Transcription of DNA Repair Genes	CDK-activating kinase assembly factor MAT1 Cyclin K, isoform A Cyclin-H Cyclin-T Cyclin-dependent kinase 12 Cyclin-dependent kinase 7 Cyclin-dependent kinase 9 DNA-directed RNA polymerase II subunit RPB11 DNA-directed RNA polymerase II subunit RPB1 DNA-directed RNA polymerase II subunit RPB2 DNA-directed RNA polymerase II subunit RPB7 DNA-directed RNA polymerase II subunit RPB9 DNA-directed RNA polymerase II subunit Rpb4 DNA-directed RNA polymerases I, II, and III subunit RPABC2 DNA-directed RNA polymerases I, II, and III subunit RPABC3 DNA-directed RNA polymerases I, II, and III subunit RPABC5 Elongin B Elongin-C FACT complex subunit Ssrp1 FACT complex subunit spt16 GEO11084p1 GH07456p General transcription and DNA repair factor IIH helicase subunit XPD General transcription and DNA repair factor IIH helicase/translocase subunit XPB General transcription and DNA repair factor IIH subunit TFB5 General transcription factor IIF subunit 1 General transcription factor IIF subunit 2 General transcription factor IIH subunit 1 General transcription factor IIH subunit 3 General transcription factor IIH subunit 4 General transcription factor IIH subunit Negative elongation factor A Negative elongation factor B Negative elongation factor D Negative elongation factor E RNA polymerase II elongation factor Ell RNA polymerase II subunit A C-terminal domain phosphatase RPB5 homolog Transcription elongation factor B polypeptide 3 Transcription elongation factor S-II Transcription elongation factor SPT4 Transcription elongation factor SPT5	B7Z018 O17432 O44226 O76513 O96433 O97183 P04052 P08266 P20232 P36958 P41900 P92204 Q02870 Q05344 Q05913 Q24134 Q24216 Q24320 Q6IGE3 Q7JWD6 Q7JZF5 Q7KPG8 Q7KVP9 Q86NP2 Q8IRG6 Q960E8 Q961D1 Q9TVQ5 Q9V460 Q9VC49 Q9VCP0 Q9VEA5 Q9VFB5 Q9VJE4 Q9VNP8 Q9VNZ3 Q9VP22 Q9VPX4 Q9VUR1 Q9VW51 Q9W147 Q9Y113	142767_at 152117_at 154538_at 21483550 AT-1 BG:DS00941.10 BcDNA:RH71704 CCNH CD 7 CDK7 CDK9 CF5 CG14037 CG6572 Cdk12 Cdk7 Cdk9 CycH CycK CycT D-rpII33 DhR3 DhXPD DmCDK7 DmCdk7 DmFcp1 DmMO15 DmMo15 DmP-TEFb DmRPB5 DmSII DmXPD Dmcdk7 Dmel\CG11115 Dmel\CG11246 Dmel\CG11979 Dmel\CG12252 Dmel\CG15218 Dmel\CG31155 Dmel\CG3319 Dmel\CG34186 Dmel\CG4204 Dmel\CG42373 Dmel\CG5041 Dmel\CG5179 Dmel\CG7405 Dmel\CG7614 Dmel\CG7764 Dmel\CG7885 Dmel\CG9291 Dmel\CG9433 Dmfcp1 Dmp34 Dmp52 Dmp8 ERCC2 ERCC3 Ell Elo-B EloA EloB EloC Elongin-B Elongin-C ElonginC Fcp1 MAT1 Mat1 Mo15 NELF-B NELF-D Nelf-A Nelf-E P-TEF P-TEFb PTefb Pol II Pol II RPII33 PolII PolIIo Polr2A Polr2B Polr2C Polr2D Polr2E Polr2F Polr2G Polr2H Polr2I Polr2J Polr2K Polr2L RNA Pol II RNA pol II RNA polII RNAP RP140 RPB1 RPB12 RPB2 RPB3 RPB5 RPB6 RPB7 RPB8 Rbp3 RpABC14 RpII140 RpII15 RpII18 RpII215 RpII33 Rpb10 Rpb11 Rpb12 Rpb3 Rpb4 Rpb5 Rpb7 Rpb8 Rpll33 SSL1 SSRP1 Spt5 Ssl1 Ssrp Su(Tpl) TFB2 TFB4 TFB5 TFB5 (uORF) TFIIF30 TH1 TTDA TfIIFalpha TfIIFbeta TfIIS Tfb1 Tfb2 Tfb4 Tfb5 Tfb5-RB XPD XPD/ERCC2 Xpd anon-66Da anon-WO0118547.648 br17 cdk-7 cdk7 cdk9 cycK dCdk7 dElongin C dRpb7 dre4 fcp1 hay l(2)34Dg l(2)SH1279 l(2)SH1299 l(2)SH1520 l(2)SH2 1279 l(2)SH2 1520 l(2)SH2 2137 l(2)SH2137 l(2)br17 l(2)k05605 l(3)E35 l34Dg lincRNA.843 mrn ms(3)nc16 nc16 p34 p40[MO15] p44 p52 p8 pol II polII rpII33 rpb3 spt16 spt4 ssl1 uORF xpd	Drosophila melanogaster (fruit fly)
Dual incision in TC-NER	CDK-activating kinase assembly factor MAT1 Cullin 4, isoform A Cyclin-H Cyclin-dependent kinase 7 DNA damage-binding protein 1 DNA polymerase epsilon catalytic subunit 1 DNA polymerase epsilon subunit 2 DNA polymerase epsilon subunit 3 DNA polymerase epsilon subunit 4 DNA repair endonuclease XPF DNA repair protein complementing XP-A cells homolog DNA-directed RNA polymerase II subunit RPB11 DNA-directed RNA polymerase II subunit RPB1 DNA-directed RNA polymerase II subunit RPB2 DNA-directed RNA polymerase II subunit RPB7 DNA-directed RNA polymerase II subunit RPB9 DNA-directed RNA polymerase II subunit Rpb4 DNA-directed RNA polymerases I, II, and III subunit RPABC2 DNA-directed RNA polymerases I, II, and III subunit RPABC3 DNA-directed RNA polymerases I, II, and III subunit RPABC5 Ercc1 GEO08380p1 GEO11084p1 GH07456p GH17761p General transcription and DNA repair factor IIH helicase subunit XPD General transcription and DNA repair factor IIH helicase/translocase subunit XPB General transcription and DNA repair factor IIH subunit TFB5 General transcription factor IIH subunit 1 General transcription factor IIH subunit 3 General transcription factor IIH subunit 4 General transcription factor IIH subunit LD35209p Polyubiquitin Pre-mRNA-processing factor 19 Pre-mRNA-splicing factor syf1 homolog Proliferating cell nuclear antigen RE31520p RING-box protein 1A RPB5 homolog Replication factor A protein 2 Replication factor C 38kD subunit, isoform A Replication factor C subunit 1 Replication factor C subunit 2 Replication factor C subunit 3 Replication protein A 70 kDa DNA-binding subunit Transcription elongation factor S-II Ubiquitin carboxyl-terminal hydrolase 7 Ubiquitin-like domain-containing protein Ubiquitin-ribosomal protein eS31 fusion protein Uncharacterized protein, isoform D Zinc finger protein 830	A1Z9G2 B7Z018 O76513 O97183 P04052 P08266 P0CG69 P15357 P17917 P20232 P28518 P35600 P36958 P53034 Q02870 Q24087 Q24216 Q24320 Q24492 Q5BI50 Q6IGE3 Q7JZF5 Q7KLW9 Q7KMG7 Q7KPG8 Q7KSN8 Q7KVP9 Q960E8 Q9U9Q1 Q9V444 Q9VBY5 Q9VC49 Q9VCN1 Q9VEA5 Q9VFB5 Q9VHV6 Q9VIH1 Q9VJE4 Q9VKW3 Q9VNP8 Q9VNZ3 Q9VPX4 Q9VRQ7 Q9VUR1 Q9VX15 Q9VYQ8 Q9VYW3 Q9W256 Q9W418 Q9W5E1 Q9XYZ5 R9PY16	142767_at 152117_at 153194_at 154538_at AT-1 BG:DS00941.10 BcDNA.LD02793 BcDNA:LD02793 BcDNA:LD06837 BcDNA:RH55360 CCNH CD 7 CDK7 CG14037 CG14729 CG14730 CG18282 CG6572 CHRAC CHRAC14 CR11700 CR32744 CT36969 CUL4 Cdk7 Chrac-14 Cul-4 Cul4 Cullin4 CycH D-SSB D-rpII33 DDB1 DMcul-4 DNApol-epsilon DNApol-epsilon255 DNApol-epsilon58 DNApolE2 DNApolE3 DNApolE4 DRFC DRP-A DhR3 DhXPD DmCDK7 DmCdk7 DmMO15 DmMo15 DmRFC2 DmRFC3 DmRFC5 DmRP-A DmRPA DmRPB5 DmSII DmUb DmUbi-p5E DmXPD Dmcdk7 Dmel\CG10215 Dmel\CG11115 Dmel\CG11246 Dmel\CG11700 Dmel\CG11839 Dmel\CG11979 Dmel\CG15220 Dmel\CG31155 Dmel\CG31368 Dmel\CG32744 Dmel\CG3319 Dmel\CG34186 Dmel\CG42373 Dmel\CG5041 Dmel\CG5313 Dmel\CG5519 Dmel\CG6258 Dmel\CG7405 Dmel\CG7614 Dmel\CG7764 Dmel\CG7885 Dmel\CG8142 Dmel\CG8711 Dmel\CG9273 Dmel\CG9433 Dmel\CG9667 Dmp34 Dmp52 Dmp8 EC2-11 ERCC1 ERCC2 ERCC3 ESTS:143G11T ESTS:199A6T Ercc1 GPB Gbp Gnf1 ISY1 MAT1 Mat1 Mes4 Mo15 NF-Yc PCNA PCNA1 PRP19 Pol II Pol II RPII33 PolE1 PolE2 PolE4 PolII PolIIo Polepsilon Polr2A Polr2B Polr2C Polr2D Polr2E Polr2F Polr2G Polr2H Polr2I Polr2J Polr2K Polr2L Prp19 RFC2 RNA Pol II RNA pol II RNA polII RNAP RP-A RP140 RPA RPA 30 kDa RPA1 RPA2 RPA3 RPA30 RPB1 RPB12 RPB2 RPB3 RPB5 RPB6 RPB7 RPB8 Rbp3 RfC RfC3 RfC38 RfC4 RfC40 Rfc3 Rfc37 Rfc38 Roc1a RpA-30 RpA2 RpABC14 RpII140 RpII15 RpII18 RpII215 RpII33 RpS27A Rpb10 Rpb11 Rpb12 Rpb3 Rpb4 Rpb5 Rpb7 Rpb8 Rpll33 SSL1 Ssb-30 Ssl1 TFB2 TFB4 TFB5 TFB5 (uORF) TTDA TfIIS Tfb1 Tfb2 Tfb4 Tfb5 Tfb5-RB UB UB3-D UBI-F80 Ub Ubi Ubi-m Ubi-p5E Ubi-p5E5 Ubi-p63E Ubiq Ubiquitin Usp7 XPD XPD/ERCC2 Xpa Xpac Xpd Znf830 anon-WO0118547.648 anon-sts41 br17 cdk-7 cdk7 cul-4 cul-4-RA cul4 dCdk7 dCul4 dPrp19 dRP-A dRPA2 dRpb7 ercc1 fand fas hay l(1)G0241 l(2)07838 l(2)34Dg l(2)SH1279 l(2)SH2 1279 l(2)SH2 2137 l(2)SH2137 l(2)br17 l(2)k05605 l(2)k13807 l(2)rfc38 l(3)E35 l(3)pl10 l(3)pl10R l34Dg lincRNA.843 mary mei-9 mrn ms(3)nc16 mus209 n(2)k13807 nc16 p34 p40[MO15] p44 p52 p8 pic pol II polII poly-ub prp19 rfc3 rfc38 rpII33 rpb3 ssl1 uORF xpd	Drosophila melanogaster (fruit fly)
Gap-filling DNA repair synthesis and ligation in TC-NER	CDK-activating kinase assembly factor MAT1 Cullin 4, isoform A Cyclin-H Cyclin-dependent kinase 7 DNA damage-binding protein 1 DNA ligase 1 DNA ligase DNA-directed RNA polymerase II subunit RPB11 DNA-directed RNA polymerase II subunit RPB1 DNA-directed RNA polymerase II subunit RPB2 DNA-directed RNA polymerase II subunit RPB7 DNA-directed RNA polymerase II subunit RPB9 DNA-directed RNA polymerase II subunit Rpb4 DNA-directed RNA polymerases I, II, and III subunit RPABC2 DNA-directed RNA polymerases I, II, and III subunit RPABC3 DNA-directed RNA polymerases I, II, and III subunit RPABC5 FI04011p GEO08380p1 GEO11084p1 GH07456p GH17761p General transcription and DNA repair factor IIH helicase subunit XPD General transcription and DNA repair factor IIH helicase/translocase subunit XPB General transcription and DNA repair factor IIH subunit TFB5 General transcription factor IIH subunit 1 General transcription factor IIH subunit 3 General transcription factor IIH subunit 4 General transcription factor IIH subunit LD35209p Polyubiquitin Pre-mRNA-processing factor 19 Pre-mRNA-splicing factor syf1 homolog RE31520p RING-box protein 1A RPB5 homolog Replication factor A protein 2 Replication factor C 38kD subunit, isoform A Replication factor C subunit 1 Replication factor C subunit 2 Replication factor C subunit 3 Replication protein A 70 kDa DNA-binding subunit Transcription elongation factor S-II Ubiquitin carboxyl-terminal hydrolase 7 Ubiquitin-like domain-containing protein Ubiquitin-ribosomal protein eS31 fusion protein Uncharacterized protein, isoform D Zinc finger protein 830	A1Z9G2 B7Z018 O76513 O97183 P04052 P08266 P0CG69 P15357 P20232 P35600 P36958 P53034 Q02870 Q24216 Q24320 Q24492 Q5BI50 Q6IGE3 Q7JZF5 Q7KLW9 Q7KPG8 Q7KSN8 Q7KVP9 Q960E8 Q9U9Q1 Q9VBY5 Q9VC49 Q9VEA5 Q9VFB5 Q9VG84 Q9VHV6 Q9VIH1 Q9VJE4 Q9VKW3 Q9VNP8 Q9VNZ3 Q9VPX4 Q9VUR1 Q9VX15 Q9VYQ8 Q9VYW3 Q9W1H4 Q9W418 Q9W5E1 Q9XYZ5 Q9Y095 R9PY16	142767_at 152117_at 153194_at 154538_at 4208 AT-1 BG:DS00941.10 BcDNA.LD02793 BcDNA:LD02793 BcDNA:LD06837 BcDNA:RH55360 CCNH CD 7 CDK7 CG14037 CG14729 CG14730 CG18282 CG6572 CR11700 CR32744 CT36969 CUL4 Cdk7 Cul-4 Cul4 Cullin4 CycH D-SSB D-rpII33 DDB1 DMcul-4 DNA-ligI DNA-ligII DNAlig1 DNAlig3 DRFC DRP-A DhR3 DhXPD DmCDK7 DmCdk7 DmMO15 DmMo15 DmRFC2 DmRFC3 DmRFC5 DmRP-A DmRPA DmRPB5 DmSII DmUb DmUbi-p5E DmXPD Dmcdk7 Dmel\CG11115 Dmel\CG11246 Dmel\CG11700 Dmel\CG11839 Dmel\CG11979 Dmel\CG15220 Dmel\CG17227 Dmel\CG31155 Dmel\CG31368 Dmel\CG32744 Dmel\CG3319 Dmel\CG34186 Dmel\CG4208 Dmel\CG42373 Dmel\CG5041 Dmel\CG5313 Dmel\CG5519 Dmel\CG6258 Dmel\CG7405 Dmel\CG7614 Dmel\CG7764 Dmel\CG7885 Dmel\CG8142 Dmel\CG8711 Dmel\CG9273 Dmel\CG9433 Dmel\CG9667 Dmp34 Dmp52 Dmp8 EC2-11 ERCC2 ERCC3 ESTS:143G11T ESTS:199A6T GPB Gbp Gnf1 ISY1 LIG3 Lig3 MAT1 Mat1 Mo15 PRP19 Pol II Pol II RPII33 PolII PolIIo Polr2A Polr2B Polr2C Polr2D Polr2E Polr2F Polr2G Polr2H Polr2I Polr2J Polr2K Polr2L Prp19 RFC2 RNA Pol II RNA pol II RNA polII RNAP RP-A RP140 RPA RPA 30 kDa RPA1 RPA2 RPA3 RPA30 RPB1 RPB12 RPB2 RPB3 RPB5 RPB6 RPB7 RPB8 Rbp3 RfC RfC3 RfC38 RfC4 RfC40 Rfc3 Rfc37 Rfc38 Roc1a RpA-30 RpA2 RpABC14 RpII140 RpII15 RpII18 RpII215 RpII33 RpS27A Rpb10 Rpb11 Rpb12 Rpb3 Rpb4 Rpb5 Rpb7 Rpb8 Rpll33 SSL1 Ssb-30 Ssl1 TFB2 TFB4 TFB5 TFB5 (uORF) TTDA TfIIS Tfb1 Tfb2 Tfb4 Tfb5 Tfb5-RB UB UB3-D UBI-F80 Ub Ubi Ubi-m Ubi-p5E Ubi-p5E5 Ubi-p63E Ubiq Ubiquitin Usp7 XPD XPD/ERCC2 XRCC1 XRCC1-RA Xpd Xrcc1 Znf830 anon-WO0118547.648 anon-sts41 br17 cdk-7 cdk7 cul-4 cul-4-RA cul4 dCdk7 dCul4 dPrp19 dRP-A dRPA2 dRpb7 fand fas hay l(1)G0241 l(2)07838 l(2)34Dg l(2)SH1279 l(2)SH2 1279 l(2)SH2 2137 l(2)SH2137 l(2)br17 l(2)k05605 l(2)k13807 l(2)rfc38 l(3)E35 l34Dg lig 3 lig3 lig3-RA lincRNA.843 mrn ms(3)nc16 n(2)k13807 nc16 p34 p40[MO15] p44 p52 p8 pic pol II polII poly-ub prp19 rfc3 rfc38 rpII33 rpb3 ssl1 uORF xpd	Drosophila melanogaster (fruit fly)
Cyclin E associated events during G1/S transition	CDK-activating kinase assembly factor MAT1 Cdc25-like protein phosphatase twine Cyclin-H Cyclin-dependent kinase 2 Cyclin-dependent kinase 7 Dacapo G1/S-specific cyclin-E M-phase inducer phosphatase RAC serine/threonine-protein kinase Uncharacterized protein, isoform C Wee1-like protein kinase	A0A0B4KF19 O76513 P20483 P23573 P54350 P54733 Q03019 Q24216 Q7JNL9 Q7KPG8 Q8INB9	142767_at AT-1 Akt Akt1 BcDNA:GH06193 CCNH CD 7 CDI4 CDK7 CDKN2B CIB1 Cdi4 Cdk2 Cdk7 CycE CycH DAP Dac Dacapo Dap Decapo DmCDK7 DmCdk7 DmMO15 DmMo15 Dmcdk7 Dmel\CG1772 Dmel\CG3319 Dmel\CG6191 Dmel\CG7405 Dmel\CG7614 Dromel_CG6191_FBtr0087678_mORF E(Sev-CycE)2B MAT1 Mat1 Mo15 P15 Wee1 cdc25 cdc2c cdi4 cdk-7 cdk7 dCdk7 dap dap-RA l(2)04454 p21 p21[dacapo] p27 p27[Dap] p27cip/kip p40[MO15] stg twe wee	Drosophila melanogaster (fruit fly)

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