GlyCosmos Pathways

Integrated of pathway data, containing glycoproteins and glycans obtained from Reactome and the Metabolism of carbohydrates in Escherichia coli O-antigens obtained from ECODAB. Search by pathway name, species, and protein name.

Source Last Updated
Reactome March 20, 2024
ECODAB April 1, 2019
Displaying entries 826 - 850 of 1070 in total
Pathway Name Protein Name UniProt ID Gene Symbol ▼ Organism GlyTouCan ID
Acrosome Reaction and Sperm:Oocyte Membrane Binding
  • Acr
  • Cd9
  • Izumo1
  • Izumo2
  • Izumo3
  • Izumo4
Rattus norvegicus (Norway rat)
Synthesis of PA
  • Acp6
  • Agpat1
  • Agpat2
  • Agpat3
  • Agpat4
  • Agpat5
  • Agpat6
  • Agpat9
  • Alpi
  • Aytl2
  • Cpla2
  • Ddhd1
  • Ddhd2
  • Gnpat
  • Gpam
  • Gpat1
  • Gpat2
  • Gpat3
  • Gpat4
  • Gpd1
  • Gpd1l
  • Gpd1l1
  • Gpd2
  • Lclat1
  • Liph
  • Lipi
  • Lpcat1
  • Lpcat4
  • Miga1
  • Miga2
  • Pla2g10
  • Pla2g12a
  • Pla2g1b
  • Pla2g2a
  • Pla2g2d
  • Pla2g2f
  • Pla2g4
  • Pla2g4a
  • Pla2g4b
  • Pla2g4d
  • Pla2g5
  • Pla2r1
  • Pld1
  • Pld2
  • Pld6
  • ddhd2
Rattus norvegicus (Norway rat)
Beta-oxidation of pristanoyl-CoA
  • Acot8
  • Acox2
  • Acox3
  • Acoxl
  • Amacr
  • Cot
  • Crat
  • Crot
  • Edh17b4
  • Hsd17b4
  • Prcox
  • Pte1
  • Scp-2
  • Scp2
  • Thcox
Rattus norvegicus (Norway rat)
Citric acid cycle (TCA cycle)
  • Aco2
  • Cs
  • Fh
  • Fh1
  • Hsp75
  • Hspc5
  • Idh2
  • Idh3B
  • Idh3a
  • Idh3g
  • Mdh2
  • Mor1
  • Nnt
  • SUCLA2
  • SUCLG2
  • Sdh1
  • Sdha
  • Sdhb
  • Sdhc
  • Sdhd
  • Sucla2
  • Suclg1
  • Suclg2
  • Trap1
Rattus norvegicus (Norway rat)
Signaling by LTK
  • Ack1
  • Alkal1
  • Alkal2
  • Ash
  • Fam150a
  • Grb2
  • Irs-1
  • Irs1
  • LOC100910984
  • Ltk
  • Pik3ca
  • Pik3cb
  • Pik3r1
  • Pik3r2
  • Shc1
  • Sos1
  • Tnk2
Rattus norvegicus (Norway rat)
Apoptotic cleavage of cellular proteins
  • Acin1
  • Apc
  • Bcap31
  • Birc2
  • Bmx
  • Casp3
  • Casp6
  • Casp7
  • Casp8
  • Clspn
  • Cpp32
  • Fak
  • Fak1
  • Fnta
  • Mch2
  • Mst3
  • Pkcd
  • Pkcq
  • Prkcd
  • Prkcq
  • Ptk2
  • Rock1
  • Satb1
  • Stk24
  • Stk26
  • Stk3
Rattus norvegicus (Norway rat)
Highly sodium permeable postsynaptic acetylcholine nicotinic receptors
  • Achre
  • Achrg
  • Acra3
  • Acra4
  • Acrb2
  • Acrb4
  • Acrd
  • Chrna3
  • Chrna4
  • Chrnb2
  • Chrnb4
  • Chrnd
  • Chrne
  • Chrng
Rattus norvegicus (Norway rat)
Sphingolipid catabolism
  • Acer1
  • Acer2
  • Acer3
  • Aldh3a2
  • Aldh3b1
  • Aldh3b2
  • Aldh4
  • Lpp1
  • Lpp2
  • Lpp3
  • Plpp1
  • Plpp2
  • Plpp3
  • Ppap2a
  • Ppap2b
  • Ppap2c
  • Sgpl1
  • Sgpp1
  • Sgpp2
  • Spl
Rattus norvegicus (Norway rat)
Metabolism of Angiotensinogen to Angiotensins
  • Ace
  • Ace2
  • Agt
  • Atp6ap2
  • Atp6ip2
  • Ces1d
  • Ces3
  • Cma1
  • Cpa3
  • Cpb
  • Cpb1
  • Cpb2
  • Ctsd
  • Ctsg
  • Ctsy
  • Ctsz
  • Dcp1
  • Enpep
  • Mcpt3
  • Mme
  • Ren
  • Ren1
  • Serpina8
Rattus norvegicus (Norway rat)
Recognition and association of DNA glycosylase with site containing an affected purine
  • Acd
  • ENSRNOG00000062927
  • ENSRNOG00000064540
  • ENSRNOG00000066901
  • ENSRNOG00000068034
  • H2ab3
  • H2ac10
  • H2ac18
  • H2ac4
  • H2afb3
  • H2afx
  • H2aj
  • H2ax
  • H2az2
  • H2bc1
  • H2bc12l1
  • H2bc6
  • H2bcl1
  • H2bcl2
  • H2bu1
  • H4c16
  • H4c2
  • H4f16
  • H4ft
  • Hist1h2ba
  • Hist1h2bc
  • Hist1h2bg
  • Hist1h2bo
  • Hist1h2bq
  • Hist1h4b
  • Hist1h4m
  • Hist2h2aa3
  • Hist4
  • Hist4h4
  • LOC100365043
  • LOC100910200
  • LOC120097726
  • LOC684797
  • Mmh
  • Neil3
  • Ogg1
  • Ogh1
  • Pot1
  • Rap1
  • Terf2
  • Terf2ip
  • Th2b
Rattus norvegicus (Norway rat)
Cleavage of the damaged purine
  • Acd
  • ENSRNOG00000062927
  • ENSRNOG00000064540
  • ENSRNOG00000066901
  • ENSRNOG00000068034
  • H2ab3
  • H2ac10
  • H2ac18
  • H2ac4
  • H2afb3
  • H2afx
  • H2aj
  • H2ax
  • H2az2
  • H2bc1
  • H2bc12l1
  • H2bc6
  • H2bcl1
  • H2bcl2
  • H2bu1
  • H4c16
  • H4c2
  • H4f16
  • H4ft
  • Hist1h2ba
  • Hist1h2bc
  • Hist1h2bg
  • Hist1h2bo
  • Hist1h2bq
  • Hist1h4b
  • Hist1h4m
  • Hist2h2aa3
  • Hist4
  • Hist4h4
  • LOC100365043
  • LOC100910200
  • LOC120097726
  • LOC684797
  • Mmh
  • Mpg
  • Mutyh
  • Myh
  • Neil3
  • Ogg1
  • Ogh1
  • Pot1
  • Rap1
  • Terf2
  • Terf2ip
  • Th2b
Rattus norvegicus (Norway rat)
DNA Damage/Telomere Stress Induced Senescence
  • Acd
  • Atm
  • Ccna1
  • Ccna2
  • Ccne
  • Ccne1
  • Ccne2
  • Cdk2
  • Cdkn1a
  • Cdkn1b
  • Cdkn2
  • ENSRNOG00000062927
  • ENSRNOG00000064540
  • ENSRNOG00000066901
  • ENSRNOG00000068034
  • Ep400
  • H2ab3
  • H2ac10
  • H2ac18
  • H2ac4
  • H2afb3
  • H2afx
  • H2aj
  • H2ax
  • H2az2
  • H2bc1
  • H2bc12l1
  • H2bc6
  • H2bcl1
  • H2bcl2
  • H2bu1
  • H4c16
  • H4c2
  • H4f16
  • H4ft
  • Hist1h2ba
  • Hist1h2bc
  • Hist1h2bg
  • Hist1h2bo
  • Hist1h2bq
  • Hist1h4b
  • Hist1h4m
  • Hist2h2aa3
  • Hist4
  • Hist4h4
  • Htatip
  • Kat5
  • LOC100365043
  • LOC100910200
  • LOC120097726
  • LOC684797
  • Mre11
  • Mre11a
  • Nbn
  • Nbs1
  • P53
  • Pot1
  • Rad50
  • Rap1
  • Terf2
  • Terf2ip
  • Th2b
  • Tip60
  • Tip60b
  • Tp53
  • p27Kip1
Rattus norvegicus (Norway rat)
Telomere Extension By Telomerase
  • Acd
  • Ankrd28
  • Ccna1
  • Ccna2
  • Cdk2
  • Cdkn2
  • Dkc1
  • Gar1
  • LOC100360065
  • Nap57
  • Nola1
  • Nop10
  • Pif1
  • Pot1
  • Ppp6c
  • Ppp6r3
  • Ppp6r3-ps1
  • Ppv
  • Rap1
  • Rtel1
  • Saps3-ps1
  • Shq1
  • Tcab1
  • Terf2
  • Terf2ip
  • Tert
  • Wdr79
  • Wrap53
Rattus norvegicus (Norway rat)
Stimuli-sensing channels
  • Accn1
  • Accn2
  • Accn3
  • Accn4
  • Accn5
  • Ano1
  • Ano10
  • Ano2
  • Ano3
  • Ano4
  • Ano5
  • Ano6
  • Ano7
  • Ano8
  • Ano9
  • Asic1
  • Asic2
  • Asic3
  • Asic4
  • Asic5
  • Asph
  • Best1
  • Best2
  • Best3
  • Best4
  • Blinac
  • Bnac1
  • Bnac2
  • Bsnd
  • CaMIII
  • Calm3
  • Cam3
  • Camc
  • Cisk
  • Clca1
  • Clca2
  • Clca4
  • Clca6
  • Clcn1
  • Clcn2
  • Clcn4
  • Clcn4-2
  • Clcn5
  • Clcn6
  • Clcn7
  • Clcnk1
  • Clcnka
  • Clcnkb
  • Clic2
  • Drasic
  • Fkbp1b
  • LOC100360645
  • LOC689103
  • Mdeg
  • Nalcn
  • Nca
  • Nedd4l
  • Ngep
  • Ostm1
  • Prp3
  • Raf
  • Raf1
  • Rb21
  • Renac
  • Rps27a
  • Ryr1
  • Ryr2
  • Scnn1a
  • Scnn1b
  • Scnn1g
  • Sgk
  • Sgk1
  • Sgk2
  • Sgk3
  • Sgkl
  • Slc17a3
  • Spasic
  • Sri
  • Stom
  • Stoml3
  • Tmem16g
  • Tpc1
  • Tpcn1
  • Tpcn2
  • Trdn
  • Ttyh1
  • Ttyh2
  • Ttyh3
  • Uba80
  • Ubb
  • Ubbl1
  • Ubc
  • Ubcep1
  • Ubcl1
  • Unc79
  • Unc80
  • Vgcnl1
  • Wwp1
Rattus norvegicus (Norway rat)
Chemokine receptors bind chemokines
  • Acc1
  • Ackr2
  • Ackr3
  • Ackr4
  • Blr1
  • Ccbp2
  • Ccl1
  • Ccl11
  • Ccl12
  • Ccl17
  • Ccl19
  • Ccl20
  • Ccl25
  • Ccl27
  • Ccl3
  • Ccl4
  • Ccl5
  • Ccr10
  • Ccr10rr
  • Ccr3
  • Ccr4
  • Ccr5
  • Ccr6
  • Ccr7
  • Ccr8
  • Ccr9
  • Ccrl1
  • Ccrl2
  • Cinc1
  • Cinc2
  • Cinc3
  • Cmkar4
  • Cmkbr3
  • Cmkbr5
  • Cmkor1
  • Cx3cl1
  • Cx3cr1
  • Cxcl1
  • Cxcl10
  • Cxcl11
  • Cxcl12
  • Cxcl13
  • Cxcl16
  • Cxcl2
  • Cxcl3
  • Cxcl4
  • Cxcl5
  • Cxcl9
  • Cxcr1
  • Cxcr2
  • Cxcr3
  • Cxcr4
  • Cxcr5
  • Cxcr6
  • Cxcr7
  • D6
  • Fkn
  • Gro
  • Il8ra
  • Il8rb
  • Inp10
  • Ltn
  • Mig
  • Mip-2
  • Mip1a
  • Mip1b
  • Mip2
  • Mob1
  • Pf4
  • Rbs11
  • Rdc1
  • Scya11
  • Scya20
  • Scya3
  • Scya4
  • Scya5
  • Scyb1
  • Scyb10
  • Scyb2
  • Scyb4
  • Scyb5
  • Scyc1
  • Scyd1
  • St38
  • XCR1
  • Xcl1
  • Xcr1
Rattus norvegicus (Norway rat)
Peroxisomal lipid metabolism
  • Acbd4
  • Acbd5
  • Hao2
  • Hao3
  • Haox2
  • Nudt19
Rattus norvegicus (Norway rat)
Transport of vitamins, nucleosides, and related molecules
  • Acatn
  • Pdzd11
  • Slc33a1
  • Slc5a6
  • Smvt
Rattus norvegicus (Norway rat)
Ketone body catabolism
  • Acat1
  • Bdh
  • Bdh1
  • Oxct
  • Oxct1
  • Oxct2a
  • Scot
Rattus norvegicus (Norway rat)
Maturation of TCA enzymes and regulation of TCA cycle
  • Acat1
  • Aco2
  • Fxn
  • Idh2
  • Pgl2
  • Sdh5
  • Sdha
  • Sdhaf2
  • Sirt3
Rattus norvegicus (Norway rat)
Keratan sulfate degradation
  • Acan
  • Agc
  • Agc1
  • Fmod
  • Glb1
  • Glb1l
  • Glb1l2
  • Glb1l3
  • Gns
  • Hexa
  • Hexb
  • Kera
  • Lcn
  • Ldc
  • Lum
  • Omd
  • Prelp
Rattus norvegicus (Norway rat)
Keratan sulfate biosynthesis
  • Acan
  • Agc
  • Agc1
  • B3gnt2
  • B3gnt3
  • B3gnt4
  • B3gnt7
  • B4galt2
  • B4galt3
  • B4galt4
  • B4galt5
  • B4galt6
  • Chst1
  • Chst2
  • Chst5
  • Fmod
  • Kera
  • Lcn
  • Ldc
  • Lum
  • Omd
  • Prelp
  • Siat10
  • Siat4b
  • Siat4c
  • Siat5
  • Siat6
  • Slc35d2
  • St3gal1
  • St3gal2
  • St3gal3
  • St3gal4
  • St3gal6
Rattus norvegicus (Norway rat)
Beta oxidation of palmitoyl-CoA to myristoyl-CoA
  • Acadvl
  • Hadha
  • Hadhb
Rattus norvegicus (Norway rat)
Beta oxidation of butanoyl-CoA to acetyl-CoA
  • Acads
  • Echs1
  • Had
  • Hadh
  • Hadhsc
  • Schad
Rattus norvegicus (Norway rat)
Beta oxidation of hexanoyl-CoA to butanoyl-CoA
  • Acads
  • Echs1
  • Had
  • Hadh
  • Hadha
  • Hadhb
  • Hadhsc
  • Schad
Rattus norvegicus (Norway rat)
Beta oxidation of octanoyl-CoA to hexanoyl-CoA
  • Acadm
  • Echs1
  • Had
  • Hadh
  • Hadha
  • Hadhb
  • Hadhsc
  • Schad
Rattus norvegicus (Norway rat)

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GlyCosmos is a member of the GlySpace Alliance together with GlyGen and Glycomics@ExPASy.

Acknowledgements

Supported by JST NBDC Grant Number JPMJND2204

Partly supported by NIH Common Fund Grant #1U01GM125267-01


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Last updated: August 19, 2024