GlyCosmos Portal

GlyCosmos Pathways

Integrated of pathway data, containing glycoproteins and glycans obtained from Reactome and the Metabolism of carbohydrates in Escherichia coli O-antigens obtained from ECODAB. Search by pathway name, species, and protein name.

Source	Last Updated
Reactome	March 20, 2024
ECODAB	April 1, 2019

Displaying entries **926 - 950** of **1070** in total

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Pathway Name	Protein Name	UniProt ID	Gene Symbol ▼	Organism
Transport of the SLBP independent Mature mRNA	Aladin WD repeat nucleoporin Aly/REF export factor Eukaryotic translation initiation factor 4E LOC683983 protein Nuclear RNA export factor 1 Nuclear cap-binding protein subunit 1 Nuclear cap-binding protein subunit 2 Nuclear envelope pore membrane protein POM 121 Nuclear pore complex protein Nup107 Nuclear pore complex protein Nup153 Nuclear pore complex protein Nup155 Nuclear pore complex protein Nup50 Nuclear pore complex protein Nup54 Nuclear pore complex protein Nup85 Nuclear pore complex protein Nup88 Nuclear pore complex protein Nup93 Nuclear pore complex protein Nup98-Nup96 Nuclear pore glycoprotein p62 Nuclear pore membrane glycoprotein 210 Nucleoporin 133 Nucleoporin 160 Nucleoporin 205 Nucleoporin 214 Nucleoporin 37 Nucleoporin NDC1 Nucleoporin NUP188 Nucleoporin NUP35 Nucleoporin NUP42 Nucleoporin p58/p45 Nucleoprotein TPR Protein SEC13 homolog RAN binding protein 2 mRNA export factor	A0A0G2K3M4 A0A8I5YC36 A0A8I5YCH6 A0A8I5ZJ67 B0BNB5 B1WC40 D3Z8B2 D3ZBL6 D3ZHV0 D4ACK1 F1LRC6 F1MA98 M0RBB1 O08587 O08658 O88984 P11654 P17955 P37199 P49791 P49793 P52590 P52591 P63074 P70581 P70582 Q3SWS8 Q4QQS8 Q56A27 Q5XFW8 Q66HC5 Q68FY1 Q6AXN4	Aaas Alyref Cbp20 Cbp80 Eif4e Gp210 LOC683983 Mrnp41 Ncbp1 Ncbp2 Ndc1 Npap60 Nup107 Nup121 Nup133 Nup153 Nup155 Nup160 Nup188 Nup205 Nup210 Nup214 Nup35 Nup37 Nup42 Nup43 Nup50 Nup53 Nup54 Nup58 Nup62 Nup84 Nup85 Nup88 Nup93 Nup98 Nupl1 Nupl2 Nxf1 Pcnt1 Pom121 Pom210 Rae1 Ranbp2 Sec13 Sec13l1 Tap Tmem48 Tpr	Rattus norvegicus (Norway rat)
Transport of the SLBP Dependant Mature mRNA	Aladin WD repeat nucleoporin Aly/REF export factor Eukaryotic translation initiation factor 4E LOC683983 protein Nuclear RNA export factor 1 Nuclear cap-binding protein subunit 1 Nuclear cap-binding protein subunit 2 Nuclear envelope pore membrane protein POM 121 Nuclear pore complex protein Nup107 Nuclear pore complex protein Nup153 Nuclear pore complex protein Nup155 Nuclear pore complex protein Nup50 Nuclear pore complex protein Nup54 Nuclear pore complex protein Nup85 Nuclear pore complex protein Nup88 Nuclear pore complex protein Nup93 Nuclear pore complex protein Nup98-Nup96 Nuclear pore glycoprotein p62 Nuclear pore membrane glycoprotein 210 Nucleoporin 133 Nucleoporin 160 Nucleoporin 205 Nucleoporin 214 Nucleoporin 37 Nucleoporin NDC1 Nucleoporin NUP188 Nucleoporin NUP35 Nucleoporin NUP42 Nucleoporin p58/p45 Nucleoprotein TPR Protein SEC13 homolog RAN binding protein 2 Stem-loop binding protein mRNA export factor	A0A0G2K3M4 A0A8I5YC36 A0A8I5YCH6 A0A8I5ZJ67 B0BNB5 B1WC40 B3DM97 D3Z8B2 D3ZBL6 D3ZHV0 D4ACK1 F1LRC6 F1MA98 M0RBB1 O08587 O08658 O88984 P11654 P17955 P37199 P49791 P49793 P52590 P52591 P63074 P70581 P70582 Q3SWS8 Q4QQS8 Q56A27 Q5XFW8 Q66HC5 Q68FY1 Q6AXN4	Aaas Alyref Cbp20 Cbp80 Eif4e Gp210 LOC683983 Mrnp41 Ncbp1 Ncbp2 Ndc1 Npap60 Nup107 Nup121 Nup133 Nup153 Nup155 Nup160 Nup188 Nup205 Nup210 Nup214 Nup35 Nup37 Nup42 Nup43 Nup50 Nup53 Nup54 Nup58 Nup62 Nup84 Nup85 Nup88 Nup93 Nup98 Nupl1 Nupl2 Nxf1 Pcnt1 Pom121 Pom210 Rae1 Ranbp2 Sec13 Sec13l1 Slbp Tap Tmem48 Tpr	Rattus norvegicus (Norway rat)
Transport of Mature mRNA Derived from an Intronless Transcript	Aladin WD repeat nucleoporin Aly/REF export factor Cleavage and polyadenylation specific factor 1 Cleavage and polyadenylation specific factor 3 Cleavage and polyadenylation specificity factor subunit 2 Cleavage and polyadenylation specificity factor subunit 4 Eukaryotic translation initiation factor 4E LOC683983 protein Nuclear RNA export factor 1 Nuclear cap-binding protein subunit 1 Nuclear cap-binding protein subunit 2 Nuclear envelope pore membrane protein POM 121 Nuclear pore complex protein Nup107 Nuclear pore complex protein Nup153 Nuclear pore complex protein Nup155 Nuclear pore complex protein Nup50 Nuclear pore complex protein Nup54 Nuclear pore complex protein Nup85 Nuclear pore complex protein Nup88 Nuclear pore complex protein Nup93 Nuclear pore complex protein Nup98-Nup96 Nuclear pore glycoprotein p62 Nuclear pore membrane glycoprotein 210 Nucleoporin 133 Nucleoporin 160 Nucleoporin 205 Nucleoporin 214 Nucleoporin 37 Nucleoporin NDC1 Nucleoporin NUP188 Nucleoporin NUP35 Nucleoporin NUP42 Nucleoporin p58/p45 Nucleoprotein TPR Pre-mRNA 3'-end-processing factor FIP1 Protein SEC13 homolog RAN binding protein 2 Symplekin scaffold protein mRNA export factor	A0A0G2JYV2 A0A0G2K1E5 A0A0G2K3M4 A0A0G2KA08 A0A8I5YC36 A0A8I5YCH6 A0A8I5ZJ67 A0A8I5ZTR8 B0BNB5 B1WC40 D3Z8B2 D3ZBL6 D3ZHV0 D4ACK1 F1LRC6 F1MA98 M0RBB1 O08587 O08658 O88984 P11654 P17955 P37199 P49791 P49793 P52590 P52591 P63074 P70581 P70582 Q3SWS8 Q4QQS8 Q56A27 Q5FVR7 Q5U317 Q5XFW8 Q66HC5 Q68FY1 Q6AXN4	Aaas Alyref Cbp20 Cbp80 Cpsf1 Cpsf2 Cpsf3 Cpsf4 Eif4e Fip1l1 Gp210 LOC683983 Mrnp41 Ncbp1 Ncbp2 Ndc1 Npap60 Nup107 Nup121 Nup133 Nup153 Nup155 Nup160 Nup188 Nup205 Nup210 Nup214 Nup35 Nup37 Nup42 Nup43 Nup50 Nup53 Nup54 Nup58 Nup62 Nup84 Nup85 Nup88 Nup93 Nup98 Nupl1 Nupl2 Nxf1 Pcnt1 Pom121 Pom210 Rae1 Ranbp2 Sec13 Sec13l1 Sympk Tap Tmem48 Tpr	Rattus norvegicus (Norway rat)
SUMOylation of DNA replication proteins	Aladin WD repeat nucleoporin Aurora kinase B Baculoviral IAP repeat-containing protein 5 Borealin DNA topoisomerase 1 DNA topoisomerase 2-alpha DNA topoisomerase 2 E3 SUMO-protein ligase PIAS3 Inner centromere protein LOC683983 protein Nuclear envelope pore membrane protein POM 121 Nuclear pore complex protein Nup107 Nuclear pore complex protein Nup153 Nuclear pore complex protein Nup155 Nuclear pore complex protein Nup50 Nuclear pore complex protein Nup54 Nuclear pore complex protein Nup85 Nuclear pore complex protein Nup88 Nuclear pore complex protein Nup93 Nuclear pore complex protein Nup98-Nup96 Nuclear pore glycoprotein p62 Nuclear pore membrane glycoprotein 210 Nucleoporin 133 Nucleoporin 160 Nucleoporin 205 Nucleoporin 214 Nucleoporin 37 Nucleoporin NDC1 Nucleoporin NUP188 Nucleoporin NUP35 Nucleoporin NUP42 Nucleoporin p58/p45 Nucleoprotein TPR Proliferating cell nuclear antigen Protein inhibitor of activated STAT, 4 RAN GTPase activating protein 1 RAN binding protein 2 SUMO-conjugating enzyme UBC9 Small ubiquitin-related modifier 1 Small ubiquitin-related modifier 2 Small ubiquitin-related modifier 3 mRNA export factor	A0A0G2K3M4 A0A0G2K5R3 A0A8I5Y7L4 A0A8I5YC36 A0A8I5YCH6 A0A8I5ZJ67 A0A8I5ZZ56 B0BNB5 B5DFF9 D3Z8B2 D3ZBL6 D3ZHV0 D4ACK1 F1LRC6 F1MA98 O08587 O08658 O55099 O70260 P04961 P11654 P17955 P37199 P41516 P49791 P49793 P52590 P52591 P61959 P63281 P70581 P70582 Q3SWS8 Q4QQS8 Q5I0H3 Q5XIF4 Q66HC5 Q68FY1 Q6AXN4 Q6AXW0 Q9JHY7 Q9WUL0	Aaas Aik2 Aim1 Airk2 Ark2 Aurkb Birc5 Cdca8 Gp210 Incenp LOC683983 Mrnp41 Ndc1 Npap60 Nup107 Nup121 Nup133 Nup153 Nup155 Nup160 Nup188 Nup205 Nup210 Nup214 Nup35 Nup37 Nup42 Nup43 Nup50 Nup53 Nup54 Nup58 Nup62 Nup84 Nup85 Nup88 Nup93 Nup98 Nupl1 Nupl2 Pcna Pcnt1 Pias3 Pias4 Pom121 Pom210 Rae1 Ranbp2 Rangap1 Smt3a Smt3h2 Stk1 Stk12 Stk5 Sumo1 Sumo2 Sumo3 Tmem48 Top-2 Top1 Top2 Top2a Top2b Tpr Ubce9 Ube2i	Rattus norvegicus (Norway rat)
SUMOylation of DNA damage response and repair proteins	Aladin WD repeat nucleoporin Breast cancer type 1 susceptibility protein homolog Centrin 2 Chromobox 2 Chromobox 4 Chromobox 8 Cohesin subunit SA Cohesin subunit SA DNA 3'-5' helicase E3 SUMO-protein ligase NSE2 E3 SUMO-protein ligase PIAS2 E3 ubiquitin-protein ligase RING1 E3 ubiquitin-protein ligase RING2 E3 ubiquitin-protein ligase RNF168 HECT-type E3 ubiquitin transferase LOC683983 protein Mediator of DNA damage checkpoint protein 1 Melanoma-associated antigen G1-like Non-structural maintenance of chromosomes element 1 homolog Non-structural maintenance of chromosomes element 4 Nuclear envelope pore membrane protein POM 121 Nuclear pore complex protein Nup107 Nuclear pore complex protein Nup153 Nuclear pore complex protein Nup155 Nuclear pore complex protein Nup50 Nuclear pore complex protein Nup54 Nuclear pore complex protein Nup85 Nuclear pore complex protein Nup88 Nuclear pore complex protein Nup93 Nuclear pore complex protein Nup98-Nup96 Nuclear pore glycoprotein p62 Nuclear pore membrane glycoprotein 210 Nucleoporin 133 Nucleoporin 160 Nucleoporin 205 Nucleoporin 214 Nucleoporin 37 Nucleoporin NDC1 Nucleoporin NUP188 Nucleoporin NUP35 Nucleoporin NUP42 Nucleoporin p58/p45 Nucleoprotein TPR PML nuclear body scaffold Poly [ADP-ribose] polymerase 1 Polyhomeotic homolog 1 Polyhomeotic homolog 2 Polyhomeotic homolog 3 Protein SEC13 homolog Protein inhibitor of activated STAT, 1 Protein inhibitor of activated STAT, 4 RAD21 cohesin complex component RAD52 homolog, DNA repair protein RAN binding protein 2 Replication protein A subunit SP100 nuclear antigen SUMO-conjugating enzyme UBC9 Scm polycomb group protein like 2 Small ubiquitin-related modifier 1 Small ubiquitin-related modifier 2 Small ubiquitin-related modifier 3 Structural maintenance of chromosomes 6 Structural maintenance of chromosomes protein 1A Structural maintenance of chromosomes protein 3 Structural maintenance of chromosomes protein 5 Thymine-DNA glycosylase X-ray repair cross complementing 4 XPC complex subunit, DNA damage recognition and repair factor mRNA export factor	A0A096MK32 A0A0G2JUC9 A0A0G2K2B0 A0A0G2K397 A0A0G2K3M4 A0A0G2K4D9 A0A0G2K4T5 A0A8I5Y5Z6 A0A8I5YC36 A0A8I5YCH6 A0A8I5ZJ67 A0A8I5ZKI2 A0A8I5ZMG5 A0A8I6AC37 A0A8I6ACN6 A0A8I6ADB5 A0A8I6AHM8 A0A8I6AJT7 A0A8I6GKN6 B0BNB5 B2RYR0 B5DFF9 D3Z8B2 D3Z9K8 D3ZBL6 D3ZHV0 D3ZQW1 D3ZRL8 D3ZZL1 D4A0M3 D4A3D8 D4ACK1 F1LRC6 F1MA98 G3V9W0 M0RE14 O08587 O08658 O54952 P11654 P17955 P27008 P37199 P49791 P49793 P52590 P52591 P61959 P63281 P70581 P70582 P97690 Q3SWS8 Q499U6 Q4KLH7 Q4KLY4 Q4QQS8 Q4V8A0 Q5I0H3 Q5U2M8 Q5XFW8 Q5XIF4 Q66HC5 Q68FY1 Q6AXN4 Q6AZ28 Q6MGB6 Q7TP21 Q9Z1M9	Aaas Adprt Bam Blm Bmh Brca1 Cbx2 Cbx4 Cbx8 Cetn2 Cspg6 Gp210 Herc2 LOC102551929 LOC683983 Mageb10 Mdc1 Miz1 Mms21 Mrnp41 Ndc1 Npap60 Nsmce1 Nsmce2 Nsmce4a Nup107 Nup121 Nup133 Nup153 Nup155 Nup160 Nup188 Nup205 Nup210 Nup214 Nup35 Nup37 Nup42 Nup43 Nup50 Nup53 Nup54 Nup58 Nup62 Nup84 Nup85 Nup88 Nup93 Nup98 Nupl1 Nupl2 Parp1 Pcnt1 Phc1 Phc2 Phc3 Pias1 Pias2 Pias4 Piasx Pml Pom121 Pom210 Rad21 Rad52 Rae1 Ranbp2 Ring1 Ring1b Rnf1 Rnf168 Rnf2 Rpa1 Scml2 Sec13 Sec13l1 Smc1 Smc1a Smc1l1 Smc3 Smc3l1 Smc5 Smc6 Smt3a Smt3h2 Sp100 Stag1 Stag2 Sumo1 Sumo2 Sumo3 Tdg Tmem48 Tpr Ubce9 Ube2i Xpc Xrcc4	Rattus norvegicus (Norway rat)
Succinyl-CoA Biosynthesis	2-oxoglutarate dehydrogenase complex component E1 28S ribosomal protein S36, mitochondrial Dihydrolipoyl dehydrogenase, mitochondrial Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial Mitochondrial ribosomal protein S36	A0A8I5ZV77 A0A8I6A554 Q01205 Q5XI78 Q6P6R2	AC132020.1 Dld Dlst Kgd4 Mrps36 Ogdh Ogdhl	Rattus norvegicus (Norway rat)
Glycine degradation	2-oxoglutarate dehydrogenase complex component E1 28S ribosomal protein S36, mitochondrial Aminomethyltransferase Dihydrolipoyl dehydrogenase, mitochondrial Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial Glycine cleavage system H protein, mitochondrial Glycine cleavage system P protein Mitochondrial ribosomal protein S36	A0A0G2JUZ5 A0A8I5ZV77 A0A8I6A0K6 A0A8I6A554 Q01205 Q5I0P2 Q5XI78 Q6P6R2	AC132020.1 Amt Dld Dlst Gcsh Gldc Kgd4 Mrps36 Ogdh Ogdhl	Rattus norvegicus (Norway rat)
Pyroptosis	Apoptosis regulator BAX BCL2-antagonist/killer 1 Caspase-1 Caspase-3 Charged multivesicular body protein 2B Charged multivesicular body protein 2a Charged multivesicular body protein 3 Charged multivesicular body protein 4B Charged multivesicular body protein 4c Charged multivesicular body protein 6 Charged multivesicular body protein 7 Cytochrome c domain-containing protein Cytochrome c, somatic Elastase, neutrophil expressed Gasdermin D Gasdermin E Granzyme B High mobility group protein B1 High mobility group protein B1 High mobility group protein B1 High mobility group protein B1 Interleukin-1 alpha Interleukin-1 beta Interleukin-18 Similar to Cytochrome c, somatic	A0A096MJ11 A0A0G2K6P4 A0A8I5Y7D7 A0A8I5ZP83 A0A8I5ZY10 A0A8I6AB52 A0A8I6AQ75 A0A8I6GBU6 D3ZXV2 D4A488 D4A5L9 D4A7H9 F1MAG0 F7EQF3 P16598 P18291 P43527 P55213 P62898 P63159 P97636 Q569C1 Q63264 Q63690 Q8CGS4	AC128290.1 Bak1 Bax Casp1 Casp3 Chmp2a Chmp2b Chmp3 Chmp4b Chmp4c Chmp6 Chmp7 Cpp32 Cycs Cycsl2 Cycsl3 Elane Gsdmd Gsdme Gzmb Hmg-1 Hmg1 Hmgb1 Hmgb1-ps33 Hmgb1-ps4 Hmgb1l1 Hmgb1l2 Hmgb1l3 Hmgb1l5 Igif Il18 Il1a Il1b Il1bc Il1bce LOC108349189 LOC108350839 LOC690675 RGD1562558 Vps24	Rattus norvegicus (Norway rat)
TP53 Regulates Metabolic Genes	14-3-3 protein beta/alpha 14-3-3 protein epsilon 14-3-3 protein eta 14-3-3 protein gamma 14-3-3 protein theta 14-3-3 protein zeta/delta 5'-AMP-activated protein kinase catalytic subunit alpha-1 5'-AMP-activated protein kinase subunit beta-1 5'-AMP-activated protein kinase subunit beta-2 5'-AMP-activated protein kinase subunit gamma-1 Cytochrome c domain-containing protein Cytochrome c oxidase assembly factor COX18 Cytochrome c oxidase assembly protein COX14 Cytochrome c oxidase assembly protein COX16 homolog, mitochondrial Cytochrome c oxidase assembly protein COX20, mitochondrial Cytochrome c oxidase copper chaperone COX11 Cytochrome c oxidase subunit 1 Cytochrome c oxidase subunit 2 Cytochrome c oxidase subunit 3 Cytochrome c oxidase subunit 4 isoform 1, mitochondrial Cytochrome c oxidase subunit 5A, mitochondrial Cytochrome c oxidase subunit 5B, mitochondrial Cytochrome c oxidase subunit 6A1, mitochondrial Cytochrome c oxidase subunit 6C-2 Cytochrome c oxidase subunit 7A2 like Cytochrome c oxidase subunit 7B, mitochondrial Cytochrome c oxidase subunit 7C, mitochondrial Cytochrome c oxidase subunit 8A, mitochondrial Cytochrome c oxidase subunit Cytochrome c, somatic DNA damage-inducible transcript 4 protein Fructose-2,6-bisphosphatase TIGAR GTP-binding protein Rheb Glucose-6-phosphate 1-dehydrogenase Glucose-6-phosphate isomerase Glutaminase kidney isoform, mitochondrial Glutaminase liver isoform, mitochondrial Glutathione peroxidase 2 Glutathione reductase (Fragment) Hamartin Leucine-rich PPR motif-containing protein, mitochondrial Neutral amino acid transporter 9 Peroxiredoxin-1 Peroxiredoxin-2 Peroxiredoxin-5, mitochondrial Protein kinase AMP-activated non-catalytic subunit gamma 2 Protein kinase AMP-activated non-catalytic subunit gamma 3 RAC-alpha serine/threonine-protein kinase RAC-beta serine/threonine-protein kinase RAC-gamma serine/threonine-protein kinase Ragulator complex protein LAMTOR1 Ragulator complex protein LAMTOR3 Ragulator complex protein LAMTOR4 Ragulator complex protein LAMTOR5 Ras-related GTP-binding protein A Ras-related GTP-binding protein B Ras-related GTP-binding protein Ras-related GTP-binding protein Regulatory associated protein of MTOR, complex 1 Roadblock/LAMTOR2 domain-containing protein Serine/threonine-protein kinase mTOR Sestrin 1 Sestrin 2 Sestrin 3 Similar to Cytochrome c, somatic Stratifin Surfeit locus protein 1 Synthesis of cytochrome C oxidase 1 Target of rapamycin complex subunit LST8 Thioredoxin reductase 1, cytoplasmic Thioredoxin Thymidine phosphorylase Translational activator of cytochrome c oxidase 1 Tuberin	A0A0G2K4P1 A0A0G2K8S8 A0A140UHX4 A0A8I5ZSY5 A0A8I5ZWG1 A0A8I6A0N4 A0A8I6A8X0 A0A8I6AAY1 A0A8I6ADH7 B2GUV6 B2RYT9 B2RZ38 D3Z8B0 D3ZDU2 D3ZF11 D3ZNJ0 D3ZXV2 D4A568 D4A5L9 D4A7E4 D4AD29 G3V985 G3V9A3 O89049 P00406 P05370 P05503 P05505 P10818 P10888 P11232 P11240 P11951 P12075 P13264 P28492 P35213 P35704 P42346 P47196 P47197 P49816 P54645 P61983 P62260 P62898 P63102 P68255 P68511 P70619 P80385 P80386 P80431 P80432 P80433 P83645 Q0D2L6 Q3B8Q3 Q5SGE0 Q5U204 Q5XFV8 Q62639 Q63484 Q63486 Q63487 Q63716 Q6P6V0 Q6P791 Q8VHZ9 Q9QXU2 Q9QZH4 Q9R063 Q9Z136 Q9Z2K5	AC128290.1 Akt1 Akt2 Akt3 Ampk1 COX2 Ccdc44 Coi Coii Coiii Cox11 Cox14 Cox16 Cox18 Cox4 Cox4a Cox4i1 Cox5a Cox5b Cox6a1 Cox6al Cox6b1 Cox6c Cox6c2 Cox7a2l Cox7b Cox7c Cox7c1 Cox8 Cox8a Cox8l Cycs Cycsl2 Cycsl3 Ddit4 ENSRNOG00000066475 Frap1 G6pd G6pdx Ga Gbl Gls Gls2 Gpi Gpx2 Gsr LOC120096563 LOC690675 Lamtor1 Lamtor3 Lamtor4 Lamtor5 Lrp157 Lrpprc Lst8 Map2k1ip1 Mlst8 Msfs1 Mt-co1 Mt-co2 Mt-co3 Mtco1 Mtco2 Mtco3 Mtor Prdx1 Prdx2 Prdx5 Prkaa1 Prkab1 Prkab2 Prkag1 Prkag2 Prkag3 RGD1562558 Raft1 Redd1 Rheb Rptor RragB Rraga Rragc Rragc_predicted Rragd Rtp801 Sco1 Sesn1 Sesn2 Sesn3 Sfn Slc38a9 Surf-1 Surf1 Taco1 Tdpx1 Tdpx2 Tigar Trxr1 Tsc1 Tsc2 Txn Txn1 Txnrd1 Tymp Ywhab Ywhae Ywhag Ywhah Ywhaq Ywhaz	Rattus norvegicus (Norway rat)
Detoxification of Reactive Oxygen Species	Bis(5'-nucleosyl)-tetraphosphatase [asymmetrical] Catalase Copper chaperone for superoxide dismutase Cytochrome b-245 heavy chain Cytochrome b-245 light chain Cytochrome c domain-containing protein Cytochrome c, somatic ERO1-like protein alpha Epididymal secretory glutathione peroxidase Extracellular superoxide dismutase [Cu-Zn] Glutathione S-transferase P Glutathione peroxidase 1 Glutathione peroxidase 2 Glutathione peroxidase 3 Glutathione peroxidase 6 Glutathione peroxidase Glutathione peroxidase Glutathione reductase (Fragment) NADPH oxidase 4 Neutrophil cytosol factor 2 Neutrophil cytosolic factor 1 Neutrophil cytosolic factor 4 Peroxiredoxin-1 Peroxiredoxin-2 Peroxiredoxin-5, mitochondrial Peroxiredoxin-6 Protein disulfide-isomerase Similar to Cytochrome c, somatic Superoxide dismutase [Cu-Zn] Superoxide dismutase [Mn], mitochondrial Thioredoxin reductase 1, cytoplasmic Thioredoxin reductase 2, mitochondrial Thioredoxin, mitochondrial Thioredoxin-dependent peroxide reductase, mitochondrial Thioredoxin	A0A8I5ZNF3 A0A8I6ARN0 A7E3N2 D3ZPW7 D3ZXV2 D4A5L9 F1M707 O35244 O89049 P04041 P04762 P04785 P04906 P07632 P07895 P11232 P23764 P30710 P35704 P62898 P70619 P83645 P97615 Q08420 Q62737 Q63716 Q64625 Q6PEC0 Q8R4A1 Q924V1 Q9ERL1 Q9JK72 Q9R063 Q9Z0J5 Q9Z0V6	AC128290.1 Aipla2 Aop2 Cas1 Cat Ccs Cyba Cybb Cycs Cycsl2 Cycsl3 Ero1a Ero1l Giig11 Gpx1 Gpx2 Gpx3 Gpx5 Gpx6 Gpx7 Gpx8 Gsr Gstp1 Kox LOC690675 Ncf1 Ncf2 Ncf4 Nox4 Nudt2 P4hb Pdia1 Prdx1 Prdx2 Prdx3 Prdx5 Prdx6 RGD1562558 Sod-3 Sod1 Sod2 Sod3 Tdpx1 Tdpx2 Trx2 Trxr1 Trxr2 Tsa Txn Txn1 Txn2 Txnrd1 Txnrd2	Rattus norvegicus (Norway rat)
Transcriptional activation of mitochondrial biogenesis	Cytochrome c domain-containing protein Cytochrome c, somatic GA binding protein transcription factor subunit alpha GA binding protein transcription factor subunit beta 1 Glutamate dehydrogenase 1, mitochondrial Isocitrate dehydrogenase [NADP], mitochondrial NAD-dependent protein deacylase sirtuin-5, mitochondrial NAD-dependent protein lipoamidase sirtuin-4, mitochondrial Propionate--CoA ligase Similar to Cytochrome c, somatic Sirtuin 3 Superoxide dismutase [Mn], mitochondrial	A0A0G2K6D8 A0A8I5XWT5 A0A8I5ZWD2 A0A8I6GJ11 D3ZXV2 D4A5L9 D4ACQ9 P07895 P10860 P56574 P62898 Q68FX9	AC128290.1 Acss2 Cycs Cycsl2 Cycsl3 Gabpa Gabpb1 Glud Glud1 Idh2 LOC690675 RGD1562558 SIRT4 Sirt3 Sirt4 Sirt5 Sod2	Rattus norvegicus (Norway rat)
Cytoprotection by HMOX1	Albumin Biliverdin reductase A Cytochrome c domain-containing protein Cytochrome c oxidase assembly factor COX18 Cytochrome c oxidase assembly protein COX14 Cytochrome c oxidase assembly protein COX16 homolog, mitochondrial Cytochrome c oxidase assembly protein COX20, mitochondrial Cytochrome c oxidase copper chaperone COX11 Cytochrome c oxidase subunit 1 Cytochrome c oxidase subunit 2 Cytochrome c oxidase subunit 3 Cytochrome c oxidase subunit 4 isoform 1, mitochondrial Cytochrome c oxidase subunit 5A, mitochondrial Cytochrome c oxidase subunit 5B, mitochondrial Cytochrome c oxidase subunit 6A1, mitochondrial Cytochrome c oxidase subunit 6C-2 Cytochrome c oxidase subunit 7A2 like Cytochrome c oxidase subunit 7B, mitochondrial Cytochrome c oxidase subunit 7C, mitochondrial Cytochrome c oxidase subunit 8A, mitochondrial Cytochrome c oxidase subunit Cytochrome c, somatic DNA helicase Fatty acid-binding protein, liver Heme oxygenase 1 Heme oxygenase 2 Hemoglobin subunit alpha-1/2 Hemoglobin subunit beta-1 Histone deacetylase 3 Histone lysine acetyltransferase CREBBP Histone-arginine methyltransferase CARM1 Leucine-rich PPR motif-containing protein, mitochondrial Mediator of RNA polymerase II transcription subunit 1 Multidrug resistance-associated protein 1 NAD(P)-binding domain-containing protein Nuclear receptor co-repressor 2 Nuclear receptor coactivator 2 Nuclear receptor coactivator Peroxisome proliferator-activated receptor alpha Retinoic acid receptor RXR-alpha SIN3 transcription regulator family member A SIN3 transcription regulator family member B SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3 Similar to Cytochrome c, somatic Surfeit locus protein 1 Synthesis of cytochrome C oxidase 1 TBL1X/Y related 1 Thymidine phosphorylase Transducin (beta)-like 1 X-linked Translational activator of cytochrome c oxidase 1 Trimethylguanosine synthase	A0A096MJV7 A0A0G2JU91 A0A0G2JY80 A0A8I5ZQQ2 A0A8I5ZSY5 A0A8I5ZWG1 A0A8I6A3K7 A0A8I6A8X0 A0A8I6AAY1 A0A8I6AC46 A0A8I6APA0 A0A8I6G8L9 B2RYT9 D3Z8B0 D3ZBP2 D3ZNF4 D3ZNJ0 D3ZXV2 D4A568 D4A5L9 G3V985 P00406 P01946 P02091 P02692 P02770 P05503 P05505 P06762 P10818 P10888 P11240 P11951 P12075 P23711 P37230 P46844 P62898 P80431 P80432 P80433 P85107 Q05343 Q4AE70 Q5SGE0 Q5XFV8 Q6JHU9 Q6P6W3 Q8CG09 Q9QXU2 Q9WUI9	AC128290.1 Abcc1 Alb Blvr Blvra COX2 Carm1 Cbp Ccdc44 Chd9 Coi Coii Coiii Cox11 Cox14 Cox16 Cox18 Cox4 Cox4a Cox4i1 Cox5a Cox5b Cox6a1 Cox6al Cox6b1 Cox6c Cox6c2 Cox7a2l Cox7b Cox7c Cox7c1 Cox8 Cox8a Cox8l Crebbp Cycs Cycsl2 Cycsl3 ENSRNOG00000064875 Fabp1 Hba-a1 Hba1 Hbb Hdac3 Hmox1 Hmox2 LOC120096563 LOC690675 Lrp157 Lrpprc Med1 Mrp1 Mt-co1 Mt-co2 Mt-co3 Mtco1 Mtco2 Mtco3 Ncoa1 Ncoa2 Ncoa6ip Ncor2 Nr1c1 Nr2b1 Pimt Ppar Ppara Prmt4 RGD1562558 Rxra Sco1 Sin3a Sin3b Smarcd3 Surf-1 Surf1 Taco1 Tbl1x Tbl1xr1 Tgs1 Tif2 Tymp	Rattus norvegicus (Norway rat)
Formation of apoptosome	Apoptosis and caspase activation inhibitor Apoptotic protease-activating factor 1 Caspase-9 Cytochrome c domain-containing protein Cytochrome c, somatic Methylthioribulose-1-phosphate dehydratase Similar to Cytochrome c, somatic	A0A8I6AHX5 D3ZUI1 D3ZXV2 D4A5L9 P62898 Q9EPV5 Q9JHK1	AC128290.1 APIP Apaf1 Apip Aven Casp9 Cycs Cycsl2 Cycsl3 LOC690675 RGD1562558 RNCASP9	Rattus norvegicus (Norway rat)
Regulation of the apoptosome activity	Apoptosis and caspase activation inhibitor Apoptotic protease-activating factor 1 Caspase-9 Cytochrome c domain-containing protein Cytochrome c, somatic Direct IAP-binding protein with low pI E3 ubiquitin-protein ligase XIAP Methylthioribulose-1-phosphate dehydratase Mitogen-activated protein kinase 1 Mitogen-activated protein kinase 3 Similar to Cytochrome c, somatic	A0A8I6AHX5 D3ZUI1 D3ZXV2 D4A5L9 D4A7Z5 P21708 P62898 P63086 Q9EPV5 Q9JHK1 Q9R0I6	AC128290.1 APIP Apaf1 Api3 Apip Aven Birc4 Casp9 Cycs Cycsl2 Cycsl3 Diablo Diablol1 Erk1 Erk2 LOC100360940 LOC690675 Mapk Mapk1 Mapk3 Prkm1 Prkm3 RGD1562558 RNCASP9 Xiap	Rattus norvegicus (Norway rat)
FGFR2 alternative splicing	DNA-directed RNA polymerase II subunit RPB7 DNA-directed RNA polymerase subunit beta DNA-directed RNA polymerase subunit DNA-directed RNA polymerases I, II, and III subunit RPABC1 DNA-directed RNA polymerases I, II, and III subunit RPABC2 DNA-directed RNA polymerases I, II, and III subunit RPABC3 DNA-directed RNA polymerases I, II, and III subunit RPABC5 General transcription factor IIF subunit 1 General transcription factor IIF subunit 2 Heterogeneous nuclear ribonucleoprotein A1 Nuclear cap-binding protein subunit 1 Nuclear cap-binding protein subunit 2 Polypyrimidine tract-binding protein 1 RNA polymerase II subunit C RNA polymerase II subunit D RNA polymerase II subunit I RNA polymerase II subunit J	A0A8I6A2X2 A0A8I6AXL7 B0BNE2 B1WC40 D3ZQI0 D4A5A6 G3V8Y5 M0RBH0 M0RCG9 O88828 P04256 P62489 Q00438 Q01750 Q56A27 Q5EB90 Q6AY96	AC109542.1 Cbp20 Cbp80 Gtf2f1 Gtf2f2 Hnrnpa1 Hnrpa1 LOC120098305 Ncbp1 Ncbp2 Polr2a Polr2b Polr2c Polr2d Polr2e Polr2f Polr2g Polr2i Polr2j Ptb Ptbp1 Pybp Rap30 Tbfii	Rattus norvegicus (Norway rat)
RNA Polymerase I Promoter Escape	CDK-activating kinase assembly factor MAT1 Chromobox 3 Cyclin-H Cyclin-dependent kinase 7 (Fragment) DNA-directed RNA polymerase I subunit RPA12 DNA-directed RNA polymerase I subunit RPA1 DNA-directed RNA polymerase I subunit RPA2 DNA-directed RNA polymerase subunit DNA-directed RNA polymerases I, II, and III subunit RPABC1 DNA-directed RNA polymerases I, II, and III subunit RPABC2 DNA-directed RNA polymerases I, II, and III subunit RPABC3 DNA-directed RNA polymerases I, II, and III subunit RPABC5 General transcription and DNA repair factor IIH helicase subunit XPD General transcription and DNA repair factor IIH helicase/translocase subunit XPB General transcription and DNA repair factor IIH subunit TFB5 General transcription factor IIH subunit 1 General transcription factor IIH subunit 2 General transcription factor IIH subunit 3 Histone H2A type 2-A Histone H2A.J Histone H2A Histone H2A Histone H2A Histone H2A Histone H2A Histone H2A Histone H2B type 1-A Histone H2B Histone H2B Histone H2B Histone H2B Histone H2B Histone H2B Histone H2B Histone H3.1 Histone H3.3 Histone H3 Histone H4 Nucleolar transcription factor 1 RNA polymerase I subunit E RNA polymerase I subunit G RRN3 homolog, RNA polymerase I transcription factor TATA box-binding protein-associated factor RNA polymerase I subunit A TATA box-binding protein-associated factor RNA polymerase I subunit B TATA box-binding protein-associated factor RNA polymerase I subunit D TATA box-binding protein-associated factor, RNA polymerase I, subunit C TATA-box-binding protein	A0A0G2JWQ0 A0A0G2JXI9 A0A0G2K8U0 A0A8I5ZSA8 A0A8I5ZYY0 A0A8I6A2W1 A0A8I6A7P3 A0A8I6A9T0 A0A8I6AFW8 A0A8I6AH26 A0A8I6AWT3 A0A8I6AXL7 A0A8I6G659 A0JN27 A9UMV8 B0BN64 B0BNE2 D3ZEI7 D3ZJ08 D3ZVK7 D3ZXP3 D3ZYB7 D4ACM0 D4ADE7 D4ADH7 F7EX11 G3V9C7 M0RBH0 M0RBQ5 O54888 O54889 O88828 P0CC09 P25977 P51952 P62804 P84245 Q00729 Q3B7U2 Q4G005 Q561R7 Q5M948 Q5RJK5 Q6LED0 Q6MFY5 Q6P773 Q9R1A0	AC109542.1 Cak Cak1 Cbx3 Ccnh Cd3eap Cdk7 ENSRNOG00000062927 ENSRNOG00000064540 ENSRNOG00000066901 ENSRNOG00000068034 Ercc2 Ercc3 Gtf2h1 Gtf2h2 Gtf2h3 Gtf2h5 H2ab3 H2ac10 H2ac18 H2ac4 H2afb3 H2afx H2aj H2ax H2az2 H2bc1 H2bc12l1 H2bc6 H2bcl1 H2bcl2 H2bu1 H3-3b H3.3b H3c13 H3f3b H4c16 H4c2 H4f16 H4ft Hist1h2ba Hist1h2bc Hist1h2bg Hist1h2bo Hist1h2bq Hist1h4b Hist1h4m Hist2h2aa3 Hist2h3c2 Hist4 Hist4h4 Josd3 LOC100360260 LOC100360453 LOC100365043 LOC100910200 LOC120097726 LOC120098305 LOC684797 Mnat1 Mo15 Polr1a Polr1b Polr1e Polr1f Polr1g Polr1h Polr2e Polr2f Rpa1 Rpa2 Rpo1-2 Rpo1-4 Rrn3 Taf1a Taf1b Taf1c Taf1d Tbp Tcfubf Th2b Twistnb Ubf-1 Ubtf Znrd1	Rattus norvegicus (Norway rat)
Estrogen-dependent gene expression	Cbp/p300-interacting transactivator with Glu/Asp-rich carboxy-terminal domain 1 Core-binding factor subunit beta Cyclic AMP-dependent transcription factor ATF-2 Cyclin-T1 Cyclin-dependent kinase 9 DNA-directed RNA polymerase II subunit RPB7 DNA-directed RNA polymerase subunit beta DNA-directed RNA polymerase subunit DNA-directed RNA polymerases I, II, and III subunit RPABC1 DNA-directed RNA polymerases I, II, and III subunit RPABC2 DNA-directed RNA polymerases I, II, and III subunit RPABC3 DNA-directed RNA polymerases I, II, and III subunit RPABC5 Estrogen receptor General transcription factor IIF subunit 1 General transcription factor IIF subunit 2 Growth regulating estrogen receptor binding 1 Heat shock protein HSP 90-alpha Heat shock protein HSP 90-beta Hepatocyte nuclear factor 3-alpha Histone H2A type 2-A Histone H2A.J Histone H2A Histone H2A Histone H2A Histone H2A Histone H2A Histone H2A Histone H2B type 1-A Histone H2B Histone H2B Histone H2B Histone H2B Histone H2B Histone H2B Histone H2B Histone H3.1 Histone H3.3 Histone H3 Histone H4 Histone acetyltransferase KAT5 Histone acetyltransferase Histone deacetylase 1 Histone lysine acetyltransferase CREBBP Histone-arginine methyltransferase CARM1 Lysine-specific histone demethylase Nuclear receptor coactivator 3 (Fragment) Nuclear receptor coactivator Nuclear receptor interacting protein 1 Nuclear receptor subfamily 5 group A member 2 POU domain, class 2, transcription factor 1 (Fragment) Peptidyl-prolyl cis-trans isomerase FKBP4 Probable ATP-dependent RNA helicase DDX5 Progesterone receptor Prostaglandin E synthase 3 Protein arginine N-methyltransferase 1 Protein c-Fos RNA polymerase II subunit C RNA polymerase II subunit D RNA polymerase II subunit I RNA polymerase II subunit J Runt-related transcription factor 1 TATA-box-binding protein Transcription factor Jun Transcription factor YY1 Transcription initiation factor IIA subunit 1 Transcription initiation factor IIA subunit 2 Transducin-like enhancer protein 3 Zinc finger protein 217 [histone H3]-trimethyl-L-lysine(9) demethylase histone acetyltransferase	A0A0G2JVK0 A0A0G2JXI9 A0A0G2JXM2 A0A0G2K736 A0A8I5Y222 A0A8I5ZKV9 A0A8I5ZSA8 A0A8I5ZYY0 A0A8I6A2W1 A0A8I6A2X2 A0A8I6A7P3 A0A8I6A9T0 A0A8I6AFW8 A0A8I6APA0 A0A8I6AWT3 A0A8I6AXL7 A0A8I6G641 A0A8I6G659 A0A8I6GMB2 A9UMV8 B0BNE2 D3ZJ08 D3ZQI0 D3ZVK7 D3ZXP3 D4A5A6 D4AB75 D4ACM0 F1LW89 G3V672 G3V8Y5 G3V9C7 M0RB75 M0RBH0 M0RBQ5 M0RCG9 O08949 O08950 O88828 P06211 P0CC09 P12841 P17325 P23512 P31503 P34058 P62489 P62804 P82995 P83868 P84245 Q00729 Q00969 Q01750 Q4AE70 Q4QQW4 Q5EB90 Q63009 Q63046 Q63449 Q641Z4 Q6AY96 Q6JHU9 Q6LED0 Q8CHJ4 Q99MK2 Q9EPU2 Q9JIT3 Q9QVC8 Q9QWM1	AC109542.1 Aib1 Aml1 Atf2 Carm1 Cbfa2 Cbfb Cbp Ccnt1 Cdk9 Cited1 Crebbp Ddx5 ENSRNOG00000062927 ENSRNOG00000064540 ENSRNOG00000066901 ENSRNOG00000068034 Ep300 Esp3 Esr Esr1 Estr Fkbp4 Fkbp52 Fos Foxa1 Greb1 Gtf2a1 Gtf2a2 Gtf2f1 Gtf2f2 H2ab3 H2ac10 H2ac18 H2ac4 H2afb3 H2afx H2aj H2ax H2az2 H2bc1 H2bc12l1 H2bc6 H2bcl1 H2bcl2 H2bu1 H3-3b H3.3b H3c13 H3f3b H4c16 H4c2 H4f16 H4ft Hdac1 Hist1h2ba Hist1h2bc Hist1h2bg Hist1h2bo Hist1h2bq Hist1h4b Hist1h4m Hist2h2aa3 Hist2h3c2 Hist4 Hist4h4 Hnf3a Hrmt1l2 Hsp84 Hsp86 Hsp90aa1 Hsp90ab1 Hspc3 Hspca Hspcb Htatip Jun Kat2b Kat5 Kdm1a Kdm4b LOC100365043 LOC100910200 LOC120097726 LOC120098305 LOC684797 Ncoa1 Ncoa3 Nr3a1 Nr3c3 Nr5a2 Nrip1 Oct-1 Otf-1 Otf1 Pgr Polr2a Polr2b Polr2c Polr2d Polr2e Polr2f Polr2g Polr2i Polr2j Pou2f1 Prmt1 Prmt4 Ptges3 RGD1564091 Rap30 Rjg-9 Runx1 Tbp Tcf-3a Tcf3a Tebp Th2b Tip60 Tip60b Tle3 Yy1 Zfp217 yy1	Rattus norvegicus (Norway rat)
B-WICH complex positively regulates rRNA expression	Actin, cytoplasmic 1 Bromodomain adjacent to zinc finger domain, 1B DNA-directed RNA polymerase I subunit RPA12 DNA-directed RNA polymerase I subunit RPA1 DNA-directed RNA polymerase I subunit RPA2 DNA-directed RNA polymerase subunit DNA-directed RNA polymerases I, II, and III subunit RPABC1 DNA-directed RNA polymerases I, II, and III subunit RPABC2 DNA-directed RNA polymerases I, II, and III subunit RPABC3 DNA-directed RNA polymerases I, II, and III subunit RPABC5 ERCC excision repair 6, chromatin remodeling factor Glycogen synthase kinase-3 beta Histone H2A type 2-A Histone H2A.J Histone H2A Histone H2A Histone H2A Histone H2A Histone H2A Histone H2A Histone H2B type 1-A Histone H2B Histone H2B Histone H2B Histone H2B Histone H2B Histone H2B Histone H2B Histone H3.1 Histone H3.3 Histone H3 Histone H4 Histone acetyltransferase Histone acetyltransferase Myb-binding protein 1A Nucleolar RNA helicase 2 Protein DEK RNA polymerase I subunit E RNA polymerase I subunit G SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 Splicing factor 3b, subunit 1 TATA box-binding protein-associated factor RNA polymerase I subunit A TATA box-binding protein-associated factor RNA polymerase I subunit B TATA box-binding protein-associated factor RNA polymerase I subunit D TATA box-binding protein-associated factor, RNA polymerase I, subunit C TATA-box-binding protein Unconventional myosin-Ic histone acetyltransferase	A0A0G2JTU1 A0A0G2JXI9 A0A8I5Y222 A0A8I5ZQQ5 A0A8I5ZSA8 A0A8I5ZYY0 A0A8I6A2W1 A0A8I6A7P3 A0A8I6A9T0 A0A8I6AFW8 A0A8I6ALC2 A0A8I6AWT3 A0A8I6AXL7 A0A8I6G641 A0A8I6G659 A9UMV8 B0BN64 B0BNE2 D3ZJ08 D3ZVK7 D3ZXP3 D3ZYB7 D4ACM0 D4ACX5 D4ADE7 D4ADH7 G3V7T6 G3V9C7 M0RBH0 M0RBQ5 O35821 O54888 O54889 O88828 P0CC09 P18266 P60711 P62804 P84245 Q00729 Q3B7U2 Q3B8Q1 Q5M948 Q63355 Q6AXS3 Q6LED0 Q6MFY5 Q6P773	AC109542.1 Actb Baz1b Cd3eap Ddx21 Ddx21a Dek ENSRNOG00000062927 ENSRNOG00000064540 ENSRNOG00000066901 ENSRNOG00000068034 Ep300 Ercc6 Gsk3b H2ab3 H2ac10 H2ac18 H2ac4 H2afb3 H2afx H2aj H2ax H2az2 H2bc1 H2bc12l1 H2bc6 H2bcl1 H2bcl2 H2bu1 H3-3b H3.3b H3c13 H3f3b H4c16 H4c2 H4f16 H4ft Hist1h2ba Hist1h2bc Hist1h2bg Hist1h2bo Hist1h2bq Hist1h4b Hist1h4m Hist2h2aa3 Hist2h3c2 Hist4 Hist4h4 Josd3 Kat2a Kat2b LOC100365043 LOC100910200 LOC120097726 LOC120098305 LOC684797 Mybbp1a Myo1c Myr2 Polr1a Polr1b Polr1e Polr1f Polr1g Polr1h Polr2e Polr2f Rpa1 Rpa2 Rpo1-2 Rpo1-4 Sf3b1 Smarca5 Taf1a Taf1b Taf1c Taf1d Tbp Th2b Twistnb Znrd1	Rattus norvegicus (Norway rat)
Transcriptional regulation by small RNAs	Aladin WD repeat nucleoporin Argonaute RISC component 1 DNA-directed RNA polymerase II subunit RPB7 DNA-directed RNA polymerase subunit beta DNA-directed RNA polymerase subunit DNA-directed RNA polymerases I, II, and III subunit RPABC1 DNA-directed RNA polymerases I, II, and III subunit RPABC2 DNA-directed RNA polymerases I, II, and III subunit RPABC3 DNA-directed RNA polymerases I, II, and III subunit RPABC5 GTP-binding nuclear protein Ran Histone H2A type 2-A Histone H2A.J Histone H2A Histone H2A Histone H2A Histone H2A Histone H2A Histone H2A Histone H2B type 1-A Histone H2B Histone H2B Histone H2B Histone H2B Histone H2B Histone H2B Histone H2B Histone H3.1 Histone H3.3 Histone H3 Histone H4 Importin 8 LOC683983 protein Nuclear envelope pore membrane protein POM 121 Nuclear pore complex protein Nup107 Nuclear pore complex protein Nup153 Nuclear pore complex protein Nup155 Nuclear pore complex protein Nup50 Nuclear pore complex protein Nup54 Nuclear pore complex protein Nup85 Nuclear pore complex protein Nup88 Nuclear pore complex protein Nup93 Nuclear pore complex protein Nup98-Nup96 Nuclear pore glycoprotein p62 Nuclear pore membrane glycoprotein 210 Nucleoporin 133 Nucleoporin 160 Nucleoporin 205 Nucleoporin 214 Nucleoporin 37 Nucleoporin NDC1 Nucleoporin NUP188 Nucleoporin NUP35 Nucleoporin NUP42 Nucleoporin p58/p45 Nucleoprotein TPR Protein SEC13 homolog Protein argonaute-2 RAN binding protein 2 RNA polymerase II subunit C RNA polymerase II subunit D RNA polymerase II subunit I RNA polymerase II subunit J Trinucleotide repeat containing adaptor 6A mRNA export factor	A0A0G2JXI9 A0A0G2K3M4 A0A0G2K6J6 A0A8I5Y871 A0A8I5YC36 A0A8I5YCH6 A0A8I5ZJ67 A0A8I5ZSA8 A0A8I5ZYY0 A0A8I6A2W1 A0A8I6A2X2 A0A8I6A7P3 A0A8I6AFW8 A0A8I6AWT3 A0A8I6AXL7 A0A8I6G659 A0A8I6GAR2 A9UMV8 B0BNB5 B0BNE2 D3Z8B2 D3ZBL6 D3ZHV0 D3ZJ08 D3ZQI0 D3ZVK7 D3ZXP3 D4A5A6 D4ACK1 D4ACM0 F1LRC6 F1MA98 G3V8Y5 G3V9C7 M0RBH0 M0RBQ5 M0RCG9 O08587 O08658 O88828 P0CC09 P11654 P17955 P37199 P49791 P49793 P52590 P52591 P62489 P62804 P62828 P70581 P70582 P84245 Q00729 Q3SWS8 Q4QQS8 Q5EB90 Q5XFW8 Q66HC5 Q68FY1 Q6AXN4 Q6LED0 Q9QZ81	AC109542.1 Aaas Ago1 Ago2 ENSRNOG00000062927 ENSRNOG00000064540 ENSRNOG00000066901 ENSRNOG00000068034 Eif2c2 Gp210 H2ab3 H2ac10 H2ac18 H2ac4 H2afb3 H2afx H2aj H2ax H2az2 H2bc1 H2bc12l1 H2bc6 H2bcl1 H2bcl2 H2bu1 H3-3b H3.3b H3c13 H3f3b H4c16 H4c2 H4f16 H4ft Hist1h2ba Hist1h2bc Hist1h2bg Hist1h2bo Hist1h2bq Hist1h4b Hist1h4m Hist2h2aa3 Hist2h3c2 Hist4 Hist4h4 Ipo8 LOC100365043 LOC100910200 LOC120097726 LOC120098305 LOC683983 LOC684797 Mrnp41 Ndc1 Npap60 Nup107 Nup121 Nup133 Nup153 Nup155 Nup160 Nup188 Nup205 Nup210 Nup214 Nup35 Nup37 Nup42 Nup43 Nup50 Nup53 Nup54 Nup58 Nup62 Nup84 Nup85 Nup88 Nup93 Nup98 Nupl1 Nupl2 Pcnt1 Polr2a Polr2b Polr2c Polr2d Polr2e Polr2f Polr2g Polr2i Polr2j Pom121 Pom210 Rae1 Ran Ranbp2 Sec13 Sec13l1 Th2b Tmem48 Tnrc6a Tpr	Rattus norvegicus (Norway rat)
Glutathione conjugation	Aldo-keto reductase family 1 member A1 Glutathione S-transferase A6 Glutathione S-transferase Mu 1 Glutathione S-transferase Mu 2 Glutathione S-transferase Mu 4 Glutathione S-transferase Mu 5 Glutathione S-transferase Mu 7 Glutathione S-transferase P Glutathione S-transferase alpha-1 Glutathione S-transferase alpha-2 Glutathione S-transferase alpha-3 Glutathione S-transferase alpha-5 Glutathione S-transferase kappa 1 Glutathione S-transferase omega-1 Glutathione S-transferase omega-2 Glutathione S-transferase theta-1 Glutathione S-transferase theta-2 Glutathione S-transferase Glutathione S-transferase Hematopoietic prostaglandin D synthase Maleylacetoacetate isomerase Microsomal glutathione S-transferase 1 Microsomal glutathione S-transferase 2 Microsomal glutathione S-transferase 3 S-formylglutathione hydrolase	A0A8I5ZLK2 A0A8I6AAX9 B0BNE5 D3ZVQ8 F1LXL7 O35543 P00502 P04903 P04904 P04905 P04906 P08009 P08010 P08011 P24473 P30713 P46418 P51635 P57113 Q01579 Q5BK56 Q6AXV9 Q6AXY0 Q9Z1B2 Q9Z339	AC097845.1 Akr1a1 Alr Esd Gst12 Gsta1 Gsta2 Gsta3 Gsta5 Gsta6 Gstk1 Gstm1 Gstm2 Gstm3 Gstm4 Gstm5 Gstm7 Gsto1 Gsto2 Gstp1 Gsts Gstt1 Gstt2 Gstyc1 Gstyc2 Gstz1 Hpgds Mgst1 Mgst2 Mgst3 Mgst3l1 Pgds Ptgds2	Rattus norvegicus (Norway rat)
Termination of O-glycan biosynthesis	Alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3 Beta-galactoside alpha-2,6-sialyltransferase 1 CMP-N-acetylneuraminate-beta-1,4-galactoside alpha-2,3-sialyltransferase CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 1 CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 2 CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 4 Mucin 15, cell surface associated Mucin 19, oligomeric Mucin 20, cell surface associated Mucin 5AC, oligomeric mucus/gel-forming Mucin 5B, oligomeric mucus/gel-forming Mucin 6, oligomeric mucus/gel-forming Mucin-13 Mucin-1 Mucin-2 (Fragment) Mucin-4 ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 4 alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase	A0A0G2JXL5 A0A0G2K8X5 A0A1W2Q5Z7 A0A8I6AAU0 A0A8I6AHG2 A0A8I6GM17 D3ZAU0 D4A6I9 F7EK02 P13721 P61131 P97881 Q02734 Q11205 Q62635 Q63661 Q64686 Q6ZYN8	AC096792.1 Muc1 Muc13 Muc15 Muc19 Muc2 Muc20 Muc4 Muc5ac Muc5b Muc6 Siat1 Siat4b Siat4c Siat5 Siat6 Siat7c Smc St3gal1 St3gal2 St3gal3 St3gal4 St6gal1 St6galnac2 St6galnac3 St6galnac4 siat7B	Rattus norvegicus (Norway rat)
Mitochondrial Fatty Acid Beta-Oxidation	3-ketoacyl-CoA thiolase, mitochondrial Acetyl-coenzyme A thioesterase Acyl carrier protein Acyl-CoA dehydrogenase family member 11 Acyl-CoA thioesterase 11 Acyl-CoA thioesterase 13 Acyl-CoA thioesterase 3 Acyl-CoA thioesterase 5 Acyl-CoA thioesterase 9 Acyl-CoA-binding domain-containing protein 6 Acyl-CoA-binding protein Acyl-coenzyme A thioesterase 1 Acyl-coenzyme A thioesterase 2, mitochondrial Acyl-coenzyme A thioesterase THEM4 Cytosolic acyl coenzyme A thioester hydrolase Malonyl-CoA-acyl carrier protein transacylase Medium-chain acyl-CoA ligase ACSF2, mitochondrial Phosphatidylcholine transfer protein Thioesterase superfamily member 5	A0A8I6A6H9 A0A8I6AEW3 A0A8I6G299 A1A5R4 B3DMA2 D3ZA93 D3ZF13 D3ZPF2 F7ETS0 O55171 O88267 P11030 P13437 P53809 Q499N5 Q566R0 Q5RJK8 Q64559 Q99NB7	AC094055.1 Acaa2 Acad11 Acbd6 Acot1 Acot11 Acot12 Acot13 Acot2 Acot3 Acot5 Acot7 Acot9 Acsf2 Bach Cach Cach1 Cte1 Dbi Mcat Mte1 Ndufab1 Pctp Stard2 Them4 Them5	Rattus norvegicus (Norway rat)
Nonhomologous End-Joining (NHEJ)	BRCA1-A complex subunit Abraxas 1 BRCA1-A complex subunit RAP80 BRCA1-associated RING domain protein 1 BRISC and BRCA1-A complex member 1 BRISC and BRCA1-A complex member 2 Breast cancer type 1 susceptibility protein homolog DNA ligase DNA polymerase lambda DNA repair protein RAD50 DNA-dependent protein kinase catalytic subunit DNA-directed DNA/RNA polymerase mu Double-strand break repair protein MRE11 E3 ubiquitin-protein ligase RNF168 E3 ubiquitin-protein ligase RNF8 HECT-type E3 ubiquitin transferase Histone H2A Histone H2B type 1-A Histone H2B Histone H2B Histone H2B Histone H2B Histone H2B Histone H2B Histone H2B Histone H4 Histone acetyltransferase KAT5 Lys-63-specific deubiquitinase BRCC36 Mediator of DNA damage checkpoint protein 1 Nibrin Non-homologous end-joining factor 1 Nuclear receptor binding SET domain protein 2 PAX-interacting protein 1 Protein artemis Protein inhibitor of activated STAT, 4 Replication timing regulatory factor 1 Serine-protein kinase ATM Tumor protein p53 binding protein 1 Tyrosyl-DNA phosphodiesterase 1 Tyrosyl-DNA phosphodiesterase 2 Ubiquitin-conjugating enzyme E2 variant 2 X-ray repair cross complementing 4 X-ray repair cross complementing 6 X-ray repair cross-complementing protein 5	A0A0G2JUC9 A0A0G2JXI9 A0A8I5Y5Z6 A0A8I5ZSA8 A0A8I5ZSS0 A0A8I6A2W1 A0A8I6A7P3 A0A8I6AFW8 A0A8I6AHX2 B2RYM5 B2RYR0 B5DFF9 D3ZSX6 D3ZTN0 D3ZXP3 D4A0U6 D4A9J4 D4ACL8 F1M842 F7F6Z7 G3V817 G3V9C7 M0RBQ5 O54952 P62804 Q00729 Q3T1H5 Q4G056 Q4KLN8 Q5I0F1 Q5PQK4 Q5RKI3 Q5U2M8 Q5XIJ6 Q5XIX3 Q6AYI4 Q6P7Q1 Q7M767 Q99MK2 Q9JIL8 Q9JIL9 Q9JIM0 Q9QZH2	ABRAXAS1 Abra1 Atm Babam1 Babam2 Bard1 Brca1 Brcc3 Brcc36 Bre Ccdc98 Dclre1c ENSRNOG00000064540 ENSRNOG00000066901 ENSRNOG00000068034 Fam175a H2afx H2ax H2bc1 H2bc12l1 H2bc6 H2bcl1 H2bcl2 H2bu1 H4c16 H4c2 H4f16 H4ft Herc2 Hist1h2ba Hist1h2bc Hist1h2bg Hist1h2bo Hist1h2bq Hist1h4b Hist1h4m Hist4 Hist4h4 Htatip Kat5 LOC100365043 LOC100910200 LOC684797 Lig4 Mdc1 Merit40 Mms2 Mre11 Mre11a Nba1 Nbn Nbs1 Nhej1 Nsd2 Paxip1 Pias4 Poll Polm Prkdc Rad50 Rap80 Rif1 Rnf168 Rnf8 Snm1l Tdp1 Tdp2 Th2b Tip60 Tip60b Tp53bp1 Ttrap Ube2v2 Uev2 Uimc1 Whsc1 Xlf Xrcc4 Xrcc5 Xrcc6	Rattus norvegicus (Norway rat)
G2/M DNA damage checkpoint	ATR interacting protein BRCA1 interacting helicase 1 BRCA1-A complex subunit Abraxas 1 BRCA1-A complex subunit RAP80 BRCA1-associated RING domain protein 1 BRISC and BRCA1-A complex member 1 BRISC and BRCA1-A complex member 2 Breast cancer type 1 susceptibility protein homolog Cell cycle checkpoint control protein RAD9B Cell cycle checkpoint control protein Cellular tumor antigen p53 Checkpoint protein DNA 3'-5' helicase DNA 3'-5' helicase DNA endonuclease RBBP8 DNA repair protein RAD50 DNA replication ATP-dependent helicase/nuclease DNA2 DNA topoisomerase II binding protein 1 DNA topoisomerase Double-strand break repair protein MRE11 E3 ubiquitin-protein ligase RNF168 E3 ubiquitin-protein ligase RNF8 Exonuclease 1 HECT-type E3 ubiquitin transferase Histone H2A Histone H2B type 1-A Histone H2B Histone H2B Histone H2B Histone H2B Histone H2B Histone H2B Histone H2B Histone H4 Histone acetyltransferase KAT5 Lys-63-specific deubiquitinase BRCC36 Mediator of DNA damage checkpoint protein 1 Nibrin Nuclear receptor binding SET domain protein 2 Protein inhibitor of activated STAT, 4 RAD1 checkpoint DNA exonuclease RAD17 checkpoint clamp loader component RAD9, HUS1, RAD1-interacting nuclear orphan protein 1 RecQ mediated genome instability 2 RecQ-mediated genome instability protein 1 Replication factor C subunit 2 Replication factor C subunit 3 Replication factor C subunit 4 Replication factor C subunit 5 Replication protein A 32 kDa subunit Replication protein A subunit Replication protein A3 Serine-protein kinase ATM Serine/threonine-protein kinase ATR Serine/threonine-protein kinase Chk1 Tumor protein p53 binding protein 1 Ubiquitin-conjugating enzyme E2 variant 2	A0A0G2JUC9 A0A0G2JXI9 A0A0G2K475 A0A0G2K4W8 A0A8I5ZSA8 A0A8I6A014 A0A8I6A2W1 A0A8I6A7P3 A0A8I6AFW8 A0A8I6GFZ6 B1WC58 B2RYM5 B2RYR0 B4F778 B5DF29 B5DFF9 D3Z822 D3ZC52 D3ZG52 D3ZHX4 D3ZNA8 D3ZQW1 D3ZXM2 D3ZXP3 D4A4M3 D4A6J4 D4A845 D4A9J4 D4ACL8 E9PTL1 F1LTH9 F1M842 G3V9C7 M0RBQ5 O54952 P10361 P62804 Q00729 Q499V3 Q4KLN8 Q5I0F1 Q5M830 Q5PQK4 Q5U2M8 Q5XIJ6 Q63528 Q641W4 Q6AY26 Q6P7Q1 Q7M767 Q7TP21 Q91ZN7 Q99MK2 Q9JIL8 Q9JIL9 Q9JIM0 Q9QZH2	ABRAXAS1 Abra1 Atm Atr Atrip Babam1 Babam2 Bard1 Blm Brca1 Brcc3 Brcc36 Bre Brip1 Ccdc98 Chek1 Chk1 Ctip Dna2 ENSRNOG00000064540 ENSRNOG00000066901 ENSRNOG00000068034 Exo1 Fam175a H2afx H2ax H2bc1 H2bc12l1 H2bc6 H2bcl1 H2bcl2 H2bu1 H4c16 H4c2 H4f16 H4ft Herc2 Hist1h2ba Hist1h2bc Hist1h2bg Hist1h2bo Hist1h2bq Hist1h4b Hist1h4m Hist4 Hist4h4 Htatip Hus1 Kat5 LOC100365043 LOC100910200 LOC684797 Mdc1 Merit40 Mms2 Mre11 Mre11a Nba1 Nbn Nbs1 Nsd2 P53 Pias4 RGD1564788 Rad1 Rad17 Rad50 Rad9a Rad9b Rap80 Rbbp8 Rfc2 Rfc3 Rfc4 Rfc5 Rhno1 Rmi1 Rmi2 Rnf168 Rnf8 Rpa1 Rpa2 Rpa3 Th2b Tip60 Tip60b Top3a Topbp1 Tp53 Tp53bp1 Ube2v2 Uev2 Uimc1 Whsc1 Wrn	Rattus norvegicus (Norway rat)
Processing of DNA double-strand break ends	ATR interacting protein BRCA1 interacting helicase 1 BRCA1-A complex subunit Abraxas 1 BRCA1-A complex subunit RAP80 BRCA1-associated RING domain protein 1 BRISC and BRCA1-A complex member 1 BRISC and BRCA1-A complex member 2 Breast cancer type 1 susceptibility protein homolog Cell cycle checkpoint control protein RAD9B Cell cycle checkpoint control protein Checkpoint protein Claspin Cyclin-A1 Cyclin-A2 Cyclin-dependent kinase 2 DNA 3'-5' helicase DNA 3'-5' helicase DNA endonuclease RBBP8 DNA repair protein RAD50 DNA replication ATP-dependent helicase/nuclease DNA2 DNA topoisomerase II binding protein 1 DNA topoisomerase Double-strand break repair protein MRE11 E3 ubiquitin-protein ligase RNF168 E3 ubiquitin-protein ligase RNF8 Exonuclease 1 HECT-type E3 ubiquitin transferase Histone H2A Histone H2B type 1-A Histone H2B Histone H2B Histone H2B Histone H2B Histone H2B Histone H2B Histone H2B Histone H4 Histone acetyltransferase KAT5 Lys-63-specific deubiquitinase BRCC36 Mediator of DNA damage checkpoint protein 1 Nibrin Nuclear receptor binding SET domain protein 2 Protein inhibitor of activated STAT, 4 Protein phosphatase 4, regulatory subunit 2 Protein timeless homolog RAD1 checkpoint DNA exonuclease RAD17 checkpoint clamp loader component RAD9, HUS1, RAD1-interacting nuclear orphan protein 1 RecQ mediated genome instability 2 RecQ-mediated genome instability protein 1 Replication factor C subunit 2 Replication factor C subunit 3 Replication factor C subunit 4 Replication factor C subunit 5 Replication protein A 32 kDa subunit Replication protein A subunit Replication protein A3 SUMO-conjugating enzyme UBC9 Serine-protein kinase ATM Serine/threonine-protein kinase ATR Serine/threonine-protein kinase Chk1 Serine/threonine-protein phosphatase 4 catalytic subunit Small ubiquitin-related modifier 2 TIMELESS-interacting protein TIMELESS-interacting protein Tumor protein p53 binding protein 1 Ubiquitin-conjugating enzyme E2 variant 2	A0A0G2JUC9 A0A0G2JVY9 A0A0G2JXI9 A0A0G2K475 A0A0G2K4W8 A0A8I5ZSA8 A0A8I6A014 A0A8I6A2W1 A0A8I6A7P3 A0A8I6AFW8 A0A8I6GFZ6 B1WC58 B2RYM5 B2RYR0 B4F778 B5DF29 B5DFF9 D3Z822 D3ZC52 D3ZG52 D3ZHC3 D3ZHX4 D3ZNA8 D3ZQW1 D3ZXM2 D3ZXP3 D4A4M3 D4A6J4 D4A845 D4A8H5 D4A9J4 D4ACL8 E9PTL1 F1LM96 F1LTH9 F1M842 G3V9C7 M0RBQ5 O54952 P61959 P62804 P63281 Q00729 Q499V3 Q4KLN8 Q4QR88 Q5BJ92 Q5I0F1 Q5M830 Q5PQK4 Q5U2M8 Q5XIJ6 Q63528 Q63699 Q641W4 Q6AY13 Q6AY26 Q6P7Q1 Q7M767 Q7TP21 Q91ZN7 Q99MK2 Q9JIL8 Q9JIL9 Q9JIM0 Q9QZH2 Q9Z2Y1	ABRAXAS1 Abra1 Atm Atr Atrip Babam1 Babam2 Bard1 Blm Brca1 Brcc3 Brcc36 Bre Brip1 Ccdc98 Ccna1 Ccna2 Cdk2 Cdkn2 Chek1 Chk1 Clspn Ctip Dna2 ENSRNOG00000064540 ENSRNOG00000066901 ENSRNOG00000068034 Exo1 Fam175a H2afx H2ax H2bc1 H2bc12l1 H2bc6 H2bcl1 H2bcl2 H2bu1 H4c16 H4c2 H4f16 H4ft Herc2 Hist1h2ba Hist1h2bc Hist1h2bg Hist1h2bo Hist1h2bq Hist1h4b Hist1h4m Hist4 Hist4h4 Htatip Hus1 Kat5 LOC100365043 LOC100910200 LOC120094818 LOC684797 Mdc1 Merit40 Mms2 Mre11 Mre11a Nba1 Nbn Nbs1 Nsd2 Pias4 Ppp4c Ppp4r2 RGD1564788 Rad1 Rad17 Rad50 Rad9a Rad9b Rap80 Rbbp8 Rfc2 Rfc3 Rfc4 Rfc5 Rhno1 Rmi1 Rmi2 Rnf168 Rnf8 Rpa1 Rpa2 Rpa3 Smt3a Smt3h2 Sumo2 Th2b Timeless Tip60 Tip60b Tipin Tipinl1 Top3a Topbp1 Tp53bp1 Ubce9 Ube2i Ube2v2 Uev2 Uimc1 Whsc1 Wrn	Rattus norvegicus (Norway rat)

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