GlyCosmos Pathways

Integrated of pathway data, containing glycoproteins and glycans obtained from Reactome and the Metabolism of carbohydrates in Escherichia coli O-antigens obtained from ECODAB. Search by pathway name, species, and protein name.

Source Last Updated
Reactome March 20, 2024
ECODAB April 1, 2019
Displaying entries 76 - 100 of 1070 in total
Pathway Name Protein Name ▼ UniProt ID Gene Symbol Organism GlyTouCan ID
Opioid Signalling
  • Oprm1
  • Pdyn
  • Pomc
  • Pomc2
  • Ror-b
Rattus norvegicus (Norway rat)
Transport of organic anions
  • Avp
  • Bsat1
  • Matr1
  • Mct8
  • Oatp1a4
  • Oatp1b2
  • Oatp1c1
  • Oatp2
  • Oatp2b1
  • Oatp3a1
  • Oatp4a1
  • Oatp4c1
  • Oatpd
  • Oatpe
  • Oatpf
  • Pgt2
  • SLC16A2
  • Slc21a10
  • Slc21a11
  • Slc21a12
  • Slc21a14
  • Slc21a2
  • Slc21a20
  • Slc21a5
  • Slc21a9
  • Slco1a4
  • Slco1b2
  • Slco1c1
  • Slco2a1
  • Slco2b1
  • Slco3a1
  • Slco4a1
  • Slco4c1
Rattus norvegicus (Norway rat)
RHOT2 GTPase cycle
  • Als2cr3
  • Arht2
  • Fzo1a
  • Fzo1b
  • Grif1
  • Mfn1
  • Mfn2
  • Myo19
  • Oip98
  • Rhot2
  • Trak1
  • Trak2
Rattus norvegicus (Norway rat)
Organic anion transporters
  • Bnpi
  • Dnpi
  • Gc1
  • Nis
  • Npt1
  • Slc17a1
  • Slc17a6
  • Slc17a7
  • Slc17a8
  • Slc20a3
  • Slc20a4
  • Slc25a1
  • Slc25a10
  • Slc25a11
  • Slc25a18
  • Slc25a22
  • Slc5a5
  • Slc5a8
  • Vglut1
  • Vglut2
  • Vglut3
Rattus norvegicus (Norway rat)
MDK and PTN in ALK signaling
  • Alk
  • Mdk
  • Ptn
  • Ptprz
  • Ptprz1
  • Ptpz
Rattus norvegicus (Norway rat)
LDL remodeling
  • Mtp
  • Mttp
  • P4hb
  • Pdia1
Rattus norvegicus (Norway rat)
Zinc influx into cells by the SLC39 gene family
  • Slc39a1
  • Slc39a14
  • Slc39a2
  • Slc39a3
  • Slc39a4
  • Slc39a6
  • Slc39a8
  • Zip3
  • Zip4
  • Zip6
  • Zip8
Rattus norvegicus (Norway rat)
Propionyl-CoA catabolism
  • LOC100361295
  • Mcee
  • Mmaa
  • Mmut
  • Mut
  • Pcca
  • Pccb
Rattus norvegicus (Norway rat)
Opsins
  • Bcp
  • Gcp
  • Opn1mw
  • Opn1sw
  • Opn3
  • Opn4
  • Opn5
  • Rgr
  • Rho
  • Rrh
Rattus norvegicus (Norway rat)
ERK/MAPK targets
  • Bmk1
  • Csbp1
  • Csbp2
  • Erk1
  • Erk2
  • Erk5
  • Mapk
  • Mapk1
  • Mapk11
  • Mapk14
  • Mapk3
  • Mapk7
  • Mapkapk1a
  • Ppp2ca
  • Ppp2cb
  • Ppp2r1a
  • Ppp2r1b
  • Ppp2r5d
  • Prkm1
  • Prkm3
  • Rps6ka1
  • Rps6ka2
  • Rps6ka3
  • Rps6ka5
  • Rsk1
Rattus norvegicus (Norway rat)
Signaling by MST1
  • Hpn
  • Mst1
  • Mst1r
  • Spint1
  • Spint2
Rattus norvegicus (Norway rat)
Crosslinking of collagen fibrils
  • Bmp1
  • Lox
  • Loxl1
  • Loxl2
  • Loxl3
  • Loxl4
  • Pcolce
  • Pcpe1
  • Pxdn
  • Tll1
  • Tll2
Rattus norvegicus (Norway rat)
P2Y receptors
  • Gpr105
  • Gpr17
  • Lpar4
  • Lpar6
  • P2ru1
  • P2ry1
  • P2ry10
  • P2ry12
  • P2ry13
  • P2ry14
  • P2ry2
  • P2ry4
  • P2ry5
  • P2ry6
  • P2y12
  • P2y4
  • P2y5
Rattus norvegicus (Norway rat)
Lysosphingolipid and LPA receptors
  • Edg1
  • Edg2
  • Edg5
  • Edg7
  • Edg8
  • Gpcr91
  • Lpa1
  • Lpa3
  • Lpar1
  • Lpar2
  • Lpar3
  • Lpar5
  • Lppr1
  • Lppr2
  • Lppr3
  • Lppr4
  • Nrg1
  • Php1
  • Plppr1
  • Plppr2
  • Plppr3
  • Plppr4
  • Plppr5
  • Prg1
  • Prg2
  • Prg3
  • Prg4
  • S1pr1
  • S1pr2
  • S1pr3
  • S1pr4
  • S1pr5
Rattus norvegicus (Norway rat)
MyD88-independent TLR4 cascade
  • Cd14
  • Ly96
  • Plin3
  • Sarm1
  • Ticam1
  • Ticam2
  • Tlr4
Rattus norvegicus (Norway rat)
Beta oxidation of myristoyl-CoA to lauroyl-CoA
  • Acadl
  • Hadha
  • Hadhb
Rattus norvegicus (Norway rat)
Transfer of LPS from LBP carrier to CD14
  • Cd14
  • Lbp
Rattus norvegicus (Norway rat)
Axonal growth inhibition (RHOA activation)
  • Arha
  • Arha2
  • Arhgdia
  • Lingo1
  • Mag
  • Mcf2
  • Ngfr
  • Nogo
  • Omg
  • Rhoa
  • Rtn4
  • Tnfrsf16
Rattus norvegicus (Norway rat)
Metal sequestration by antimicrobial proteins
  • Lcn2
  • Ltf
  • Mrp14
  • Mrp8
  • S100a8
  • S100a9
Rattus norvegicus (Norway rat)
Tight junction interactions
  • F11r
  • Jam1
  • Par-6a
  • Par3
  • Par6a
  • Pard3
  • Pard6a
  • Pard6b
  • Pard6g
  • Pkcl
  • Prkci
Rattus norvegicus (Norway rat)
Interleukin-2 signaling
  • Fak2
  • Il-2
  • Il2
  • Il2ra
  • Il2rb
  • Jak1
  • Jak3
  • Lck
  • Mgf
  • Ptk2b
  • Pyk2
  • Shc1
  • Stat5a
  • Stat5b
  • Syk
Rattus norvegicus (Norway rat)
IRAK2 mediated activation of TAK1 complex
  • Irak2
  • LOC100360645
  • Map3k7
  • Map3k7ip2
  • Rps27a
  • Tab1
  • Tab2
  • Tab3
  • Traf6
  • Uba80
  • Ubb
  • Ubbl1
  • Ubc
  • Ubcep1
  • Ubcl1
Rattus norvegicus (Norway rat)
activated TAK1 mediates p38 MAPK activation
  • Csbp1
  • Csbp2
  • ENSRNOG00000067007
  • Ikbkg
  • Irak1
  • Irak2
  • Map2k3
  • Map2k6
  • Map3k7
  • Map3k7ip2
  • Mapk11
  • Mapk14
  • Mapkapk2
  • Mapkapk3
  • Mkk6
  • Nemo
  • Nod1
  • Nod2
  • Ripk2
  • Tab1
  • Tab2
  • Tab3
  • Traf6
Rattus norvegicus (Norway rat)
IRAK2 mediated activation of TAK1 complex upon TLR7/8 or 9 stimulation
  • Cd14
  • Irak2
  • LOC100360645
  • Ly96
  • Map3k7
  • Map3k7ip2
  • Plin3
  • Rps27a
  • Tab1
  • Tab2
  • Tab3
  • Ticam1
  • Ticam2
  • Tlr4
  • Traf6
  • Uba80
  • Ubb
  • Ubbl1
  • Ubc
  • Ubcep1
  • Ubcl1
Rattus norvegicus (Norway rat)
TRAF6-mediated induction of TAK1 complex within TLR4 complex
  • Cd14
  • Irak2
  • LOC100360645
  • Ly96
  • Map3k7
  • Map3k7ip2
  • Plin3
  • Rps27a
  • Sarm1
  • Tab1
  • Tab2
  • Tab3
  • Ticam1
  • Ticam2
  • Tlr4
  • Traf6
  • Uba80
  • Ubb
  • Ubbl1
  • Ubc
  • Ubcep1
  • Ubcl1
Rattus norvegicus (Norway rat)

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GlyCosmos is a member of the GlySpace Alliance together with GlyGen and Glycomics@ExPASy.

Acknowledgements

Supported by JST NBDC Grant Number JPMJND2204

Partly supported by NIH Common Fund Grant #1U01GM125267-01


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Last updated: August 19, 2024