GlyCosmos Pathways

Integrated of pathway data, containing glycoproteins and glycans obtained from Reactome and the Metabolism of carbohydrates in Escherichia coli O-antigens obtained from ECODAB. Search by pathway name, species, and protein name.

Source Last Updated
Reactome November 12, 2024
ECODAB April 1, 2019
Displaying entries 201 - 225 of 228 in total
Pathway Name ▲ Protein Name UniProt ID Gene Symbol Organism GlyTouCan ID
TP53 Regulates Metabolic Genes
  • AHP1
  • GLR1
  • MET19
  • PGI1
  • TPX1
  • TRX1
  • TRX2
  • TRX3
  • TSA
  • TSA1
  • TSA2
  • ZRG14
  • ZWF1
Saccharomyces cerevisiae (brewer's yeast)
TP53 Regulates Transcription of DNA Repair Genes
  • BUR1
  • BUR2
  • CCL1
  • CDC68
  • CST4
  • CTK1
  • CTK2
  • DST1
  • ELA1
  • ELC1
  • FCP1
  • KIN28
  • LOM3
  • POB3
  • PPR2
  • RAD25
  • RAD3
  • REM1
  • RIG2
  • RPA7
  • RPB1
  • RPB10
  • RPB11
  • RPB12
  • RPB150
  • RPB2
  • RPB220
  • RPB3
  • RPB4
  • RPB5
  • RPB6
  • RPB7
  • RPB8
  • RPB9
  • RPC10
  • RPC9
  • RPO21
  • RPO22
  • RPO26
  • SGV1
  • SPT16
  • SPT4
  • SPT5
  • SSF1
  • SSL1
  • SSL2
  • SSU71
  • SUA8
  • TFB1
  • TFB2
  • TFB3
  • TFB4
  • TFB5
  • TFG1
  • TFG2
  • UVS112
Saccharomyces cerevisiae (brewer's yeast)
Termination of translesion DNA synthesis
  • BUF1
  • BUF2
  • CDC44
  • DBH1
  • DLS1
  • DPB2
  • DPB3
  • DPB4
  • DUN2
  • POL2
  • POL30
  • RAD30
  • REV1
  • RFA1
  • RFA2
  • RFC1
  • RFC2
  • RFC3
  • RFC4
  • RFC5
  • RPA1
  • SCD2
  • UBI4
  • UBP3
Saccharomyces cerevisiae (brewer's yeast)
The NLRP3 inflammasome
  • ALY1
  • ALY2
  • ART3
  • ART5
  • ART6
  • CSR2
  • ECM21
  • HSP82
  • HSP90
  • LDB19
  • MRG19
  • PAL3
  • RIM8
  • ROD1
  • ROG3
  • SGT1
  • TRX1
  • TRX2
  • TRX3
Saccharomyces cerevisiae (brewer's yeast)
Thyroxine biosynthesis
  • AIM14
  • FRE8
Saccharomyces cerevisiae (brewer's yeast)
Translation initiation complex formation
  • CDC33
  • CDC63
  • CRY2
  • GCD11
  • HCR1
  • NAB1
  • NAB1A
  • NIP1
  • NOP13
  • PES4
  • PLC2
  • PRT1
  • RP51A
  • RP51B
  • RP55A
  • RP61R
  • RPG1
  • RPS0A
  • RPS101
  • RPS102
  • RPS10A
  • RPS10B
  • RPS11A
  • RPS11B
  • RPS12
  • RPS13
  • RPS13A
  • RPS13B
  • RPS13C
  • RPS14A
  • RPS14B
  • RPS15
  • RPS16A
  • RPS16AA
  • RPS16B
  • RPS17A
  • RPS17B
  • RPS18A
  • RPS18B
  • RPS19A
  • RPS1B
  • RPS2
  • RPS20
  • RPS21
  • RPS21B
  • RPS22A
  • RPS23A
  • RPS23B
  • RPS24
  • RPS24A
  • RPS24B
  • RPS24EA
  • RPS24EB
  • RPS25A
  • RPS25B
  • RPS26
  • RPS26A
  • RPS26B
  • RPS27A
  • RPS27B
  • RPS28A
  • RPS28B
  • RPS29A
  • RPS3
  • RPS30
  • RPS31
  • RPS31A
  • RPS33B
  • RPS36A
  • RPS37
  • RPS4
  • RPS4A
  • RPS4B
  • RPS5
  • RPS6A
  • RPS6B
  • RPS7A
  • RPS7B
  • RPS8A
  • RPS8B
  • RPS9A
  • RPS9B
  • STM1
  • SUF14
  • SUI2
  • SUI3
  • SUI4
  • SUP38
  • SUP44
  • SUP46
  • TIF1
  • TIF11
  • TIF2
  • TIF211
  • TIF212
  • TIF213
  • TIF3
  • TIF32
  • TIF34
  • TIF35
  • TIF41A
  • TIF41B
  • TIF42
  • TIF45
  • TIF4631
  • UBI3
  • URP2
  • YS11A
  • YS29A
  • YST1
Saccharomyces cerevisiae (brewer's yeast)
Translesion Synthesis by POLH
  • BUF1
  • BUF2
  • CDC44
  • CDC48
  • DBH1
  • HRD4
  • NPL4
  • PIP3
  • POL30
  • RAD30
  • RFA1
  • RFA2
  • RFC1
  • RFC2
  • RFC3
  • RFC4
  • RFC5
  • RPA1
  • SCD2
  • UBI4
  • UFD1
Saccharomyces cerevisiae (brewer's yeast)
Transport and synthesis of PAPS
  • MET14
  • SEL2
  • SFP2
  • SUL1
  • SUL2
Saccharomyces cerevisiae (brewer's yeast)
Transport of Mature mRNA derived from an Intron-Containing Transcript
  • ANU3
  • ASM4
  • BRR3
  • CBC1
  • CBC2
  • CBP20
  • CBP80
  • CST20
  • FAL1
  • GCR3
  • GLE1
  • GLE2
  • HTN1
  • JIP4
  • MEX67
  • MLP1
  • MTR2
  • MUD13
  • NDC1
  • NIC96
  • NLE3
  • NSP1
  • NSP116
  • NUP1
  • NUP116
  • NUP120
  • NUP133
  • NUP170
  • NUP188
  • NUP192
  • NUP2
  • NUP42
  • NUP57
  • NUP59
  • NUP82
  • NUP84
  • NUP85
  • RAE1
  • RAT2
  • RAT3
  • RAT9
  • RIP1
  • RSS1
  • SAE1
  • SEC13
  • SEH1
  • SFO1
  • STO1
  • SUA6
  • SUT1
  • UIP1
  • UPF3
  • YRA1
  • YRB1
  • YRB2
Saccharomyces cerevisiae (brewer's yeast)
Transport of RCbl within the body
  • YOR1
  • YRS1
Saccharomyces cerevisiae (brewer's yeast)
Transport of bile salts and organic acids, metal ions and amine compounds
  • ERC1
  • YDR338C
Saccharomyces cerevisiae (brewer's yeast)
Transport of inorganic cations/anions and amino acids/oligopeptides
  • AVT1
  • ERS1
  • PET8
Saccharomyces cerevisiae (brewer's yeast)
Transport of organic anions
  • ESBP6
  • MCH2
  • MCH3
  • MCH4
  • MCH5
Saccharomyces cerevisiae (brewer's yeast)
Transport of vitamins, nucleosides, and related molecules
  • YBR220C
Saccharomyces cerevisiae (brewer's yeast)
Triglyceride biosynthesis
  • DGA1
  • GUT1
  • PAH1
  • PAP1
  • SMP2
Saccharomyces cerevisiae (brewer's yeast)
Tryptophan catabolism
  • ARO8
  • ARO9
  • AVT4
  • BNA1
  • BNA2
  • BNA3
  • BNA4
  • BNA5
  • HAD1
Saccharomyces cerevisiae (brewer's yeast)
Ub-specific processing proteases
  • ADA2
  • ADA3
  • ADA4
  • CIM3
  • CIM5
  • CRL13
  • CRL3
  • DEP1
  • DOA3
  • DOA5
  • DOT4
  • FUN19
  • FUN54
  • GCN5
  • GRD19
  • H2A1
  • H2A2
  • H2B1
  • H2B2
  • HRD2
  • HTA1
  • HTA2
  • HTB1
  • HTB2
  • MIH1
  • MPR1
  • MRC1
  • NAS1
  • NAS4
  • NAS5
  • NAS7
  • NGG1
  • NIN1
  • PCS1
  • PLC1
  • PLC2
  • PRC1
  • PRC2
  • PRE1
  • PRE10
  • PRE2
  • PRE3
  • PRE4
  • PRE5
  • PRE6
  • PRE8
  • PRE9
  • PRG1
  • PRS1
  • PRS2
  • PRS4
  • PRS5
  • PUP1
  • PUP2
  • PUP3
  • RCE1
  • RPD1
  • RPN1
  • RPN11
  • RPN12
  • RPN2
  • RPN3
  • RPN5
  • RPN6
  • RPN7
  • RPN8
  • RPN9
  • RPS10A
  • RPS10B
  • RPS1A
  • RPS1B
  • RPT1
  • RPT2
  • RPT3
  • RPT4
  • RPT5
  • RPT6
  • SCD2
  • SCL1
  • SDS3
  • SEN3
  • SNX3
  • SPT11
  • SPT12
  • SUG1
  • SUG2
  • SUN2
  • SWI7
  • SWI9
  • TAF10
  • TAF17
  • TAF23
  • TAF25
  • TAF9
  • TBPY
  • TBY1
  • TEP1
  • TRA1
  • UBI4
  • UBP10
  • UBP15
  • UBP2
  • UBP3
  • UBP6
  • UBP8
  • YEL077C
  • YHS4
  • YIL177C
  • YJL225C
  • YLL066C
  • YLL067C
  • YML133C
  • YNT1
  • YOR338W
  • YPR204W
  • YRF1-1
  • YRF1-2
  • YRF1-3
  • YRF1-4
  • YRF1-5
  • YRF1-6
  • YRF1-7
  • YRF1-8
  • YTA1
  • YTA2
  • YTA3
  • YTA5
Saccharomyces cerevisiae (brewer's yeast)
VEGFR2 mediated vascular permeability
  • AVO1
  • AVO3
  • BIT2
  • BIT61
  • CPR1
  • DRR2
  • HSC82
  • HSP82
  • HSP90
  • KOM1
  • LST8
  • NCP1
  • NCPR1
  • PKH2
  • PRD1
  • SCH9
  • SLI2
  • TOR2
  • TSC11
  • TSC14
  • YPK1
Saccharomyces cerevisiae (brewer's yeast)
VLDLR internalisation and degradation
  • AMP1
  • APL1
  • APL2
  • APL3
  • APM4
  • APS2
  • CHC1
  • CLC1
  • OSW3
  • PRB1
  • RRT12
  • YAP17
  • YAP80
  • YSP3
Saccharomyces cerevisiae (brewer's yeast)
Vitamin B2 (riboflavin) metabolism
  • FAD1
  • FMN1
  • NPP1
  • NPP2
Saccharomyces cerevisiae (brewer's yeast)
Vitamin C (ascorbate) metabolism
  • CBR
  • CBR1
  • CBR5
  • CYB5
  • VPS73
  • YBR241C
Saccharomyces cerevisiae (brewer's yeast)
Wax biosynthesis
  • DGA1
Saccharomyces cerevisiae (brewer's yeast)
Zinc influx into cells by the SLC39 gene family
  • ATX2
  • YKE4
Saccharomyces cerevisiae (brewer's yeast)
alpha-linolenic acid (ALA) metabolism
  • APA1
  • ELO1
  • ELO2
  • ELO3
  • FEN1
  • FOX3
  • GNS1
  • PAL1
  • PAT2
  • POT1
  • POX3
  • PTE1
  • PXA1
  • SRE1
  • SSH2
  • SUR4
  • TES1
  • VBM1
  • VBM2
Saccharomyces cerevisiae (brewer's yeast)
mRNA Capping
  • ABD1
  • CBC1
  • CBC2
  • CBP20
  • CBP80
  • CCL1
  • CEG1
  • GCR3
  • KIN28
  • LOM3
  • MUD13
  • RAD25
  • RAD3
  • REM1
  • RIG2
  • RPA7
  • RPB1
  • RPB10
  • RPB11
  • RPB12
  • RPB150
  • RPB2
  • RPB220
  • RPB3
  • RPB4
  • RPB5
  • RPB6
  • RPB7
  • RPB8
  • RPB9
  • RPC10
  • RPC9
  • RPO21
  • RPO22
  • RPO26
  • SAE1
  • SPT5
  • SSL1
  • SSL2
  • SSU71
  • STO1
  • SUA8
  • SUT1
  • TFB1
  • TFB2
  • TFB3
  • TFB4
  • TFB5
  • TFG1
  • TFG2
  • UVS112
Saccharomyces cerevisiae (brewer's yeast)

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GlyCosmos is a member of the GlySpace Alliance together with GlyGen and Glycomics@ExPASy.

Acknowledgements

Supported by JST NBDC Grant Number JPMJND2204

Partly supported by NIH Common Fund Grant #1U01GM125267-01


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Last updated: February 17, 2025