GlyCosmos Portal

GlyCosmos Pathways

Integrated of pathway data, containing glycoproteins and glycans obtained from Reactome and the Metabolism of carbohydrates in Escherichia coli O-antigens obtained from ECODAB. Search by pathway name, species, and protein name.

Source	Last Updated
Reactome	March 20, 2024
ECODAB	April 1, 2019

Displaying entries **1 - 25** of **250** in total

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Pathway Name ▼	Protein Name	UniProt ID	Gene Symbol	Organism
trans-Golgi Network Vesicle Budding	ADP-ribosylation factor 1 ADP-ribosylation factor 2 ARF guanine-nucleotide exchange factor 2 Protein SSO1 Protein SSO2 Protein transport protein SEC9 Sporulation-specific protein 20 Vacuolar v-SNARE NYV1	P11076 P19146 P32867 P39926 P39993 P40357 Q04359 Q12255	ARF1 ARF2 GEA2 HSS7 MAM2 NYV1 SEC9 SPO20 SSO1 SSO2	Saccharomyces cerevisiae (brewer's yeast)
phospho-PLA2 pathway	Lysophospholipase 1 Lysophospholipase 2 Lysophospholipase 3 Mitogen-activated protein kinase FUS3 Mitogen-activated protein kinase KSS1 Mitogen-activated protein kinase SLT2/MPK1 Putative meiotic phospholipase SPO1 Sporulation-specific mitogen-activated protein kinase SMK1	P14681 P16892 P39105 P41808 P53541 Q00772 Q03674 Q08108	DAC2 FUS3 KSS1 MPK1 PLB1 PLB2 PLB3 SLT2 SMK1 SPO1	Saccharomyces cerevisiae (brewer's yeast)
mTORC1-mediated signalling	Eukaryotic initiation factor 4F subunit p150 Eukaryotic translation initiation factor 4B FK506-binding protein 1 Nucleolar protein 13 Serine/threonine-protein kinase YPK3 Small ribosomal subunit protein eS6A Small ribosomal subunit protein eS6B	P0CX37 P0CX38 P20081 P34167 P38070 P39935 P53883	FKB1 FPR1 NOP13 RBP1 RPS101 RPS102 RPS10A RPS10B RPS6A RPS6B STM1 TIF3 TIF42 TIF4631 YPK3	Saccharomyces cerevisiae (brewer's yeast)
mRNA decay by 5' to 3' exoribonuclease	ATP-dependent RNA helicase DHH1 Deadenylation-dependent mRNA-decapping factor PAT1 Enhancer of mRNA-decapping protein 3 Sm-like protein LSm1 U6 snRNA-associated Sm-like protein LSm2 U6 snRNA-associated Sm-like protein LSm3 U6 snRNA-associated Sm-like protein LSm4 U6 snRNA-associated Sm-like protein LSm5 U6 snRNA-associated Sm-like protein LSm6 U6 snRNA-associated Sm-like protein LSm7 m7GpppN-mRNA hydrolase mRNA-decapping enzyme subunit 1	P25644 P38203 P39517 P39998 P40070 P40089 P47017 P53550 P53905 P57743 Q06406 Q12517	DCP1 DCP2 DHH1 EDC3 LSM1 LSM16 LSM2 LSM3 LSM4 LSM5 LSM6 LSM7 MRT1 PAT1 PSU1 SDB23 SMX4 SMX5 SNP3 SPB8 USS1 USS2	Saccharomyces cerevisiae (brewer's yeast)
mRNA Capping	Cyclin CCL1 DNA-directed RNA polymerase II subunit RPB11 DNA-directed RNA polymerase II subunit RPB1 DNA-directed RNA polymerase II subunit RPB2 DNA-directed RNA polymerase II subunit RPB3 DNA-directed RNA polymerase II subunit RPB4 DNA-directed RNA polymerase II subunit RPB7 DNA-directed RNA polymerase II subunit RPB9 DNA-directed RNA polymerases I, II, and III subunit RPABC1 DNA-directed RNA polymerases I, II, and III subunit RPABC2 DNA-directed RNA polymerases I, II, and III subunit RPABC3 DNA-directed RNA polymerases I, II, and III subunit RPABC4 DNA-directed RNA polymerases I, II, and III subunit RPABC5 General transcription and DNA repair factor IIH helicase subunit XPD General transcription and DNA repair factor IIH helicase/translocase subunit XPB/SSL2 General transcription and DNA repair factor IIH subunit SSL1 General transcription and DNA repair factor IIH subunit TFB1 General transcription and DNA repair factor IIH subunit TFB2 General transcription and DNA repair factor IIH subunit TFB4 General transcription and DNA repair factor IIH subunit TFB5 Nuclear cap-binding protein complex subunit 1 Nuclear cap-binding protein subunit 2 RNA polymerase II transcription factor B subunit 3 Serine/threonine-protein kinase KIN28 Transcription elongation factor SPT5 Transcription initiation factor IIF subunit alpha Transcription initiation factor IIF subunit beta mRNA cap guanine-N7 methyltransferase mRNA-capping enzyme subunit alpha	P04050 P06242 P06839 P08518 P16370 P20433 P20434 P20435 P20436 P22139 P27692 P27999 P32776 P32783 P34087 P34160 P37366 P38902 P40422 P41895 P41896 Q00578 Q01159 Q02939 Q03290 Q04673 Q08920 Q12004 Q3E7C1	ABD1 CBC1 CBC2 CBP20 CBP80 CCL1 CEG1 GCR3 KIN28 LOM3 MUD13 RAD25 RAD3 REM1 RIG2 RPA7 RPB1 RPB10 RPB11 RPB12 RPB150 RPB2 RPB220 RPB3 RPB4 RPB5 RPB6 RPB7 RPB8 RPB9 RPC10 RPC9 RPO21 RPO22 RPO26 SAE1 SPT5 SSL1 SSL2 SSU71 STO1 SUA8 SUT1 TFB1 TFB2 TFB3 TFB4 TFB5 TFG1 TFG2 UVS112	Saccharomyces cerevisiae (brewer's yeast)
alpha-linolenic acid (ALA) metabolism	3-ketoacyl-CoA thiolase, peroxisomal Fatty acid elongase 1 Fatty acid elongase 2 Fatty acid elongase 3 Peroxisomal acyl-coenzyme A thioester hydrolase 1 Peroxisomal long-chain fatty acid import protein 2	P25358 P27796 P39540 P40319 P41903 P41909	APA1 ELO1 ELO2 ELO3 FEN1 FOX3 GNS1 PAL1 PAT2 POT1 POX3 PTE1 PXA1 SRE1 SSH2 SUR4 TES1 VBM1 VBM2	Saccharomyces cerevisiae (brewer's yeast)
Zinc influx into cells by the SLC39 gene family	Metal homeostasis factor ATX2 Zinc transporter YKE4	P40544 Q12067	ATX2 YKE4	Saccharomyces cerevisiae (brewer's yeast)
Wax biosynthesis	Diacylglycerol O-acyltransferase 1	Q08650	DGA1	Saccharomyces cerevisiae (brewer's yeast)
VxPx cargo-targeting to cilium	ADP-ribosylation factor 1 ADP-ribosylation factor 2 ARF guanine-nucleotide exchange factor 2	P11076 P19146 P39993	ARF1 ARF2 GEA2	Saccharomyces cerevisiae (brewer's yeast)
Vitamin C (ascorbate) metabolism	Cytochrome b5 NADH-cytochrome b5 reductase 1 Probable metabolite transport protein YBR241C Vacuolar protein sorting-associated protein 73	P38142 P38626 P40312 P53142	CBR CBR1 CBR5 CYB5 VPS73 YBR241C	Saccharomyces cerevisiae (brewer's yeast)
Vitamin B2 (riboflavin) metabolism	Ectonucleotide pyrophosphatase/phosphodiesterase 1 Ectonucleotide pyrophosphatase/phosphodiesterase 2 Flavin adenine dinucleotide synthase Riboflavin kinase	P25353 P38913 P39997 Q03778	FAD1 FMN1 NPP1 NPP2	Saccharomyces cerevisiae (brewer's yeast)
VLDLR internalisation and degradation	AP-1 complex subunit beta-1 AP-2 complex subunit alpha AP-2 complex subunit beta AP-2 complex subunit mu AP-2 complex subunit sigma Cerevisin Clathrin heavy chain Clathrin light chain Subtilase-type proteinase RRT12 Subtilisin-like protease 3	P09232 P17891 P22137 P25036 P25381 P27351 P36000 P38065 Q00381 Q99186	AMP1 APL1 APL2 APL3 APM4 APS2 CHC1 CLC1 OSW3 PRB1 RRT12 YAP17 YAP80 YSP3	Saccharomyces cerevisiae (brewer's yeast)
VEGFR2 mediated vascular permeability	ATP-dependent molecular chaperone HSC82 ATP-dependent molecular chaperone HSP82 NADPH--cytochrome P450 reductase Probable target of rapamycin complex 2 subunit BIT2 Serine/threonine-protein kinase PKH2 Serine/threonine-protein kinase SCH9 Serine/threonine-protein kinase TOR2 Serine/threonine-protein kinase YPK1 Target of rapamycin complex 2 subunit AVO1 Target of rapamycin complex 2 subunit BIT61 Target of rapamycin complex 2 subunit TSC11 Target of rapamycin complex subunit LST8	P02829 P11792 P12688 P15108 P16603 P32600 P38346 P40061 P41318 P47041 Q08236 Q12236	AVO1 AVO3 BIT2 BIT61 CPR1 DRR2 HSC82 HSP82 HSP90 KOM1 LST8 NCP1 NCPR1 PKH2 PRD1 SCH9 SLI2 TOR2 TSC11 TSC14 YPK1	Saccharomyces cerevisiae (brewer's yeast)
Ubiquitin Mediated Degradation of Phosphorylated Cdc25A	26S proteasome regulatory subunit 4 homolog 26S proteasome regulatory subunit 6A 26S proteasome regulatory subunit 6B homolog 26S proteasome regulatory subunit 7 homolog 26S proteasome regulatory subunit 8 homolog 26S proteasome regulatory subunit RPN12 26S proteasome regulatory subunit RPN1 26S proteasome regulatory subunit RPN2 26S proteasome regulatory subunit RPN3 26S proteasome regulatory subunit RPN5 26S proteasome regulatory subunit RPN6 26S proteasome regulatory subunit RPN7 26S proteasome regulatory subunit RPN8 26S proteasome regulatory subunit RPN9 26S proteasome subunit RPT4 DNA damage response protein kinase DUN1 M-phase inducer phosphatase Polyubiquitin Probable 26S proteasome regulatory subunit p27 Probable proteasome subunit alpha type-7 Proteasome activator BLM10 Proteasome subunit alpha type-1 Proteasome subunit alpha type-2 Proteasome subunit alpha type-3 Proteasome subunit alpha type-4 Proteasome subunit alpha type-5 Proteasome subunit alpha type-6 Proteasome subunit beta type-1 Proteasome subunit beta type-2 Proteasome subunit beta type-3 Proteasome subunit beta type-4 Proteasome subunit beta type-5 Proteasome subunit beta type-7 Serine/threonine-protein kinase KSP1 Serine/threonine-protein kinase RCK1 Ubiquitin carboxyl-terminal hydrolase RPN11	P0CG63 P21242 P21243 P22141 P23638 P23639 P23748 P25043 P25451 P30656 P30657 P32379 P32496 P32565 P33297 P33298 P33299 P38622 P38624 P38691 P38764 P39009 P40016 P40302 P40303 P40327 P40555 P43583 P43588 P53549 Q01939 Q04062 Q06103 Q08723 Q12250 Q12377	BLM10 BLM3 CIM3 CIM5 CRL13 CRL3 DOA3 DOA5 DUN1 HRD2 KSP1 MIH1 MPR1 NAS1 NAS2 NAS4 NAS5 NAS7 NIN1 PCS1 PRC1 PRC2 PRE1 PRE10 PRE2 PRE3 PRE4 PRE5 PRE6 PRE8 PRE9 PRG1 PRS1 PRS2 PRS4 PRS5 PUP1 PUP2 PUP3 RCK1 RPD1 RPN1 RPN11 RPN12 RPN2 RPN3 RPN5 RPN6 RPN7 RPN8 RPN9 RPT1 RPT2 RPT3 RPT4 RPT5 RPT6 SCD2 SCL1 SEN3 SUG1 SUG2 SUN2 TBPY TBY1 UBI4 YHS4 YNT1 YTA1 YTA2 YTA3 YTA5	Saccharomyces cerevisiae (brewer's yeast)
Ub-specific processing proteases	26S proteasome regulatory subunit 4 homolog 26S proteasome regulatory subunit 6A 26S proteasome regulatory subunit 6B homolog 26S proteasome regulatory subunit 7 homolog 26S proteasome regulatory subunit 8 homolog 26S proteasome regulatory subunit RPN12 26S proteasome regulatory subunit RPN1 26S proteasome regulatory subunit RPN2 26S proteasome regulatory subunit RPN3 26S proteasome regulatory subunit RPN5 26S proteasome regulatory subunit RPN6 26S proteasome regulatory subunit RPN7 26S proteasome regulatory subunit RPN8 26S proteasome regulatory subunit RPN9 26S proteasome subunit RPT4 CAAX prenyl protease 2 Chromatin-remodeling complexes subunit NGG1 Histone H2A.1 Histone H2A.2 Histone H2B.1 Histone H2B.2 Histone acetyltransferase GCN5 M-phase inducer phosphatase Mediator of replication checkpoint protein 1 Polyubiquitin Probable 26S proteasome regulatory subunit p27 Probable phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase TEP1 Probable proteasome subunit alpha type-7 Proteasome activator BLM10 Proteasome subunit alpha type-1 Proteasome subunit alpha type-2 Proteasome subunit alpha type-3 Proteasome subunit alpha type-4 Proteasome subunit alpha type-5 Proteasome subunit alpha type-6 Proteasome subunit beta type-1 Proteasome subunit beta type-2 Proteasome subunit beta type-3 Proteasome subunit beta type-4 Proteasome subunit beta type-5 Proteasome subunit beta type-7 SWIRM domain-containing protein FUN19 SWIRM domain-containing protein YOR338W Small ribosomal subunit protein eS1A Small ribosomal subunit protein eS1B Sorting nexin-3 Transcription initiation factor TFIID subunit 10 Transcription initiation factor TFIID subunit 9 Transcription-associated protein 1 Transcriptional adapter 2 Transcriptional regulatory protein DEP1 Transcriptional regulatory protein SDS3 Ubiquitin carboxyl-terminal hydrolase 10 Ubiquitin carboxyl-terminal hydrolase 15 Ubiquitin carboxyl-terminal hydrolase 2 Ubiquitin carboxyl-terminal hydrolase 3 Ubiquitin carboxyl-terminal hydrolase 6 Ubiquitin carboxyl-terminal hydrolase 8 Ubiquitin carboxyl-terminal hydrolase RPN11 Y' element ATP-dependent helicase YEL077C Y' element ATP-dependent helicase YIL177C Y' element ATP-dependent helicase YJL225C Y' element ATP-dependent helicase YLL066C Y' element ATP-dependent helicase YLL067C Y' element ATP-dependent helicase YML133C Y' element ATP-dependent helicase YPR204W Y' element ATP-dependent helicase protein 1 copy 1 Y' element ATP-dependent helicase protein 1 copy 2 Y' element ATP-dependent helicase protein 1 copy 3 Y' element ATP-dependent helicase protein 1 copy 4 Y' element ATP-dependent helicase protein 1 copy 5 Y' element ATP-dependent helicase protein 1 copy 6 Y' element ATP-dependent helicase protein 1 copy 7 Y' element ATP-dependent helicase protein 1 copy 8	O13559 P02293 P02294 P04911 P04912 P0CG63 P0CX14 P0CX15 P0CX20 P0CX21 P0CX22 P21242 P21243 P22141 P23248 P23638 P23639 P23748 P25043 P25451 P25588 P28003 P30656 P30657 P31385 P32379 P32494 P32496 P32565 P33297 P33298 P33299 P33442 P38624 P38764 P38811 P40016 P40105 P40302 P40303 P40327 P40434 P40505 P40555 P40889 P43583 P43588 P43593 P50101 P50102 P53549 P53819 P53874 P53916 Q01476 Q01477 Q01939 Q02336 Q03099 Q03330 Q03530 Q04062 Q05027 Q06103 Q07888 Q08723 Q08826 Q08995 Q12030 Q12250 Q12377 Q3E7X8 Q99208 Q99326	ADA2 ADA3 ADA4 BLM10 BLM3 CIM3 CIM5 CRL13 CRL3 DEP1 DOA3 DOA5 DOT4 FUN19 FUN54 GCN5 GRD19 H2A1 H2A2 H2B1 H2B2 HRD2 HTA1 HTA2 HTB1 HTB2 MIH1 MPR1 MRC1 NAS1 NAS2 NAS4 NAS5 NAS7 NGG1 NIN1 PCS1 PLC1 PLC2 PRC1 PRC2 PRE1 PRE10 PRE2 PRE3 PRE4 PRE5 PRE6 PRE8 PRE9 PRG1 PRS1 PRS2 PRS4 PRS5 PUP1 PUP2 PUP3 RCE1 RPD1 RPN1 RPN11 RPN12 RPN2 RPN3 RPN5 RPN6 RPN7 RPN8 RPN9 RPS10A RPS10B RPS1A RPS1B RPT1 RPT2 RPT3 RPT4 RPT5 RPT6 SCD2 SCL1 SDS3 SEN3 SNX3 SPT11 SPT12 SUG1 SUG2 SUN2 SWI7 SWI9 TAF10 TAF17 TAF23 TAF25 TAF9 TBPY TBY1 TEP1 TRA1 UBI4 UBP10 UBP15 UBP2 UBP3 UBP6 UBP8 YEL077C YHS4 YIL177C YJL225C YLL066C YLL067C YML133C YNT1 YOR338W YPR204W YRF1-1 YRF1-2 YRF1-3 YRF1-4 YRF1-5 YRF1-6 YRF1-7 YRF1-8 YTA1 YTA2 YTA3 YTA5	Saccharomyces cerevisiae (brewer's yeast)
Tryptophan catabolism	3-hydroxyanthranilate 3,4-dioxygenase Aromatic amino acid aminotransferase 2 Aromatic/aminoadipate aminotransferase 1 Indoleamine 2,3-dioxygenase Kynureninase Kynurenine 3-monooxygenase Probable kynurenine--oxoglutarate transaminase BNA3 Vacuolar amino acid transporter 4	P38169 P38840 P47039 P47096 P47125 P50944 P53090 Q05979	ARO8 ARO9 AVT4 BNA1 BNA2 BNA3 BNA4 BNA5 HAD1	Saccharomyces cerevisiae (brewer's yeast)
Triglyceride biosynthesis	Diacylglycerol O-acyltransferase 1 Glycerol kinase Phosphatidic acid phosphohydrolase 1	P32190 P32567 Q08650	DGA1 GUT1 PAH1 PAP1 SMP2	Saccharomyces cerevisiae (brewer's yeast)
Transport of vitamins, nucleosides, and related molecules	Uncharacterized membrane protein YBR220C	P38318	YBR220C	Saccharomyces cerevisiae (brewer's yeast)
Transport of organic anions	Probable transporter MCH2 Probable transporter MCH4 Riboflavin transporter MCH5 Uncharacterized transporter ESBP6	P36032 P53918 Q08268 Q08777	ESBP6 MCH2 MCH3 MCH4 MCH5	Saccharomyces cerevisiae (brewer's yeast)
Transport of inorganic cations/anions and amino acids/oligopeptides	Cystine transporter Putative mitochondrial carrier protein PET8 Vacuolar amino acid transporter 1	P17261 P38921 P47082	AVT1 ERS1 PET8	Saccharomyces cerevisiae (brewer's yeast)
Transport of bile salts and organic acids, metal ions and amine compounds	Ethionine resistance-conferring protein 1 Uncharacterized transporter YDR338C	P38767 Q05497	ERC1 YDR338C	Saccharomyces cerevisiae (brewer's yeast)
Transport of RCbl within the body	Oligomycin resistance ATP-dependent permease YOR1	P53049	YOR1 YRS1	Saccharomyces cerevisiae (brewer's yeast)
Transport of Mature mRNA derived from an Intron-Containing Transcript	ATP-dependent RNA helicase FAL1 Nonsense-mediated mRNA decay protein 3 Nuclear cap-binding protein complex subunit 1 Nuclear cap-binding protein subunit 2 Nucleoporin ASM4 Nucleoporin NDC1 Nucleoporin NIC96 Nucleoporin NSP1 Nucleoporin NUP116/NSP116 Nucleoporin NUP120 Nucleoporin NUP133 Nucleoporin NUP170 Nucleoporin NUP188 Nucleoporin NUP192 Nucleoporin NUP1 Nucleoporin NUP2 Nucleoporin NUP42 Nucleoporin NUP57 Nucleoporin NUP82 Nucleoporin NUP84 Nucleoporin NUP85 Nucleoporin SEH1 Protein MLP1 Protein transport protein SEC13 RNA annealing protein YRA1 Ran-specific GTPase-activating protein 1 Ran-specific GTPase-activating protein 2 Uncharacterized protein JIP4 mRNA export factor GLE1 mRNA export factor GLE2 mRNA export factor MEX67 mRNA transport regulator MTR2	P14907 P20676 P32499 P32500 P34077 P34160 P34232 P35729 P36161 P38181 P40066 P40368 P40517 P41920 P46673 P47054 P48412 P48837 P49686 P52593 P52891 P53011 Q02455 Q02630 Q03361 Q04491 Q05166 Q08920 Q12099 Q12159 Q12315 Q99257	ANU3 ASM4 BRR3 CBC1 CBC2 CBP20 CBP80 CST20 FAL1 GCR3 GLE1 GLE2 HTN1 JIP4 MEX67 MLP1 MTR2 MUD13 NDC1 NIC96 NLE3 NSP1 NSP116 NUP1 NUP116 NUP120 NUP133 NUP170 NUP188 NUP192 NUP2 NUP42 NUP57 NUP59 NUP82 NUP84 NUP85 RAE1 RAT2 RAT3 RAT9 RIP1 RSS1 SAE1 SEC13 SEH1 SFO1 STO1 SUA6 SUT1 UIP1 UPF3 YRA1 YRB1 YRB2	Saccharomyces cerevisiae (brewer's yeast)
Transport and synthesis of PAPS	Adenylyl-sulfate kinase Sulfate permease 1 Sulfate permease 2	P38359 Q02196 Q12325	MET14 SEL2 SFP2 SUL1 SUL2	Saccharomyces cerevisiae (brewer's yeast)
Translesion Synthesis by POLH	Cell division control protein 48 DNA polymerase eta Nuclear protein localization protein 4 Polyubiquitin Proliferating cell nuclear antigen Replication factor A protein 1 Replication factor A protein 2 Replication factor C subunit 1 Replication factor C subunit 2 Replication factor C subunit 3 Replication factor C subunit 4 Replication factor C subunit 5 Ubiquitin fusion degradation protein 1	P0CG63 P15873 P22336 P25694 P26754 P33755 P38251 P38629 P38630 P40339 P40348 P53044 Q04049	BUF1 BUF2 CDC44 CDC48 DBH1 HRD4 NPL4 PIP3 POL30 RAD30 RFA1 RFA2 RFC1 RFC2 RFC3 RFC4 RFC5 RPA1 SCD2 UBI4 UFD1	Saccharomyces cerevisiae (brewer's yeast)

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