PACDB provides the information on pathogens (e.g. bacteria, fungus, toxin and virus) adhering to carbohydrates expressed on the cell surface of host animals or plants.
Source | Last Updated |
---|---|
Pathogen Adherence to Carbohydrate Database (PACDB) | June 1, 2016 |
Species | Pathogen Adherence Molecule | Ligand Name | Ligand Feature | Target Source | Glycan Sequence ▲ | Binding | PubMed ID |
---|---|---|---|---|---|---|---|
Influenza virus | Unknown | GM3(Neu4Ac5Gc) | Monosialoglycosphingolipids | Ac(-4)Neu5Gc(a2-3)Gal(b1-4)Glc(b1-1)Cer | Not Binding | 7870741 | |
Influenza virus | Unknown | GM3(Neu4Ac5Gc) | Monosialoglycosphingolipids | Ac(-4)Neu5Gc(a2-3)Gal(b1-4)Glc(b1-1)Cer | Not Binding | 1740131 | |
Influenza virus | Unknown | GD3(Neu5Ac9Ac) | Disialoglycosphingolipids | Ac(-9)NeuAc(a2-8)NeuAc(a2-3)Gal(b1-4)Glc(b1-1)Cer | Not Binding | 7870741 | |
Influenza virus | Unknown | GD3(Neu5Ac9Ac) | Disialoglycosphingolipids | Ac(-9)NeuAc(a2-8)NeuAc(a2-3)Gal(b1-4)Glc(b1-1)Cer | Binding | 7870741 | |
Escherichia coli | F1C | Ceramide | Non-glycosylated Lipids | Cer | Not Binding | 10816509 | |
Clostridium botulinum | Botulinum neurotoxin (16S) | Fucose | Monosaccharides | Intestinal epithelial cells (T84) | Fuc | Not Binding | 17156748 |
Clostridium botulinum | HA | Fucose | Monosaccharides | Intestinal epithelial cells (T84) | Fuc | Not Binding | 17156748 |
Ralstonia solanacearum | RS-IIL (homologous to PA-IIL) | Fucose | Monosaccharides | Fuc | Binding | 16762477 | |
Pseudomonas aeruginosa | PA-IIL | Fucosylamine | Monosaccharides | Fuc | Binding | 10967261 | |
Pseudomonas aeruginosa | PA-IIL | L-Fucose | Monosaccharides | Fuc | Binding | 10967261 | |
Pseudomonas aeruginosa | PA-IIL (47-kDa) | L-Fucose | Monosaccharides | Fuc | Binding | 15049333 | |
Vibrio cholerae | Unknown | L-Fucose | Monosaccharides | Fuc | Binding | 2885220 | |
Helicobacter pylori | Unknown | Fucose | Monosaccharides | Fuc | Binding | 8574698 | |
Helicobacter pylori | Unknown | Fucose | Monosaccharides | Fuc | Binding | 16088272 | |
Enterococcus faecalis | EfaA (Lary family) | L-Fucose-containing residues | Saccharides | Fuc | Binding | 12640357 | |
Pseudomonas aeruginosa | Unknown | Fucose | Monosaccharides | Respiratory tract | Fuc | Binding | 16564136 |
Norovirus | Unknown | Blood group H antigen | Disaccharides | Saliva | Fuc(a1-2)Gal | Binding | 18701592 |
Pseudomonas aeruginosa | PA-IIL | Blood group H antigen | Disaccharides | Fuc(a1-2)Gal | Binding | 16762477 | |
Ralstonia solanacearum | RSL (30-kDa proteins) | Blood group H antigen | Disaccharides | Fuc(a1-2)Gal | Binding | 16762477 | |
Norovirus | Unknown | Blood group H antigen | Disaccharides | Saliva | Fuc(a1-2)Gal | Not Binding | 18701592 |
Norovirus | Unknown | Blood group H antigen | Disaccharides | Fuc(a1-2)Gal | Binding | 18599458 | |
Shigella dysenteriae | Shiga toxin | unnamed ligand | Glycosphingolipids | Fuc(a1-2)Gal(b1-3)GalNAc(b1-3)Gal(a1-4)Gal(b1-4)Glc(b1-1)Cer | Not Binding | 2435422 | |
Actinomyces viscosus | Unknown | unnamed ligand | Glycosphingolipids | Human meconium | Fuc(a1-2)Gal(b1-3)GalNAc(b1-3)Gal(a1-4)Gal(b1-4)Glc(b1-1)Cer | Not Binding | 2358461 |
Shigella dysenteriae | B subunit | unnamed ligand | Glycosphingolipids | Human meconium | Fuc(a1-2)Gal(b1-3)GalNAc(b1-3)Gal(a1-4)Gal(b1-4)Glc(b1-1)Cer | Not Binding | 3543013 |
Escherichia coli | Unknown | unnamed ligand | Glycosphingolipids | Fuc(a1-2)Gal(b1-3)GalNAc(b1-3)Gal(a1-4)Gal(b1-4)Glc(b1-1)Cer | Binding | 2435422 |
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Last updated: December 9, 2024