GlyCosmos Pathways

Integrated of pathway data, containing glycoproteins and glycans obtained from Reactome and the Metabolism of carbohydrates in Escherichia coli O-antigens obtained from ECODAB. Search by pathway name, species, and protein name.

Source Last Updated
Reactome March 20, 2024
ECODAB April 1, 2019
Displaying entries 401 - 425 of 1070 in total
Pathway Name Protein Name UniProt ID Gene Symbol ▲ Organism GlyTouCan ID
RND2 GTPase cycle
  • Aldh3a2
  • Aldh4
  • Ankrd26
  • Arhgap1
  • Arhgap35
  • Arhgap5
  • Arms
  • Bltp3b
  • Cav
  • Cav1
  • Ckap4
  • Depdc1b
  • Dlg5
  • Dsg1
  • Dst
  • Epha2
  • Fam83b
  • Fbp17
  • Fnbp1
  • Frs2
  • Frs3
  • Golga3
  • Grlf1
  • Kidins220
  • Kif14
  • Ktn1
  • Muc13
  • Nisch
  • Nudc
  • P190A
  • Pik3r1
  • Pik3r2
  • Pkp4
  • Plxnd1
  • Prag1
  • Pragmin
  • Ptpn13
  • Rbm39
  • Rbmx
  • Rbmxrt
  • Rnd2
  • Scrib
  • Snt2
  • Soc
  • Tfrc
  • Tnfaip1
  • Trfr
  • Trp
  • Txnl1
  • Ubxd5
  • Ubxn11
  • Uhrf1bp1l
  • Vangl1
  • Vangl2
  • Wdr6
  • p190ARHOGAP
Rattus norvegicus (Norway rat)
RND1 GTPase cycle
  • Aldh3a2
  • Aldh4
  • Ankrd26
  • Arhgap35
  • Arhgap5
  • Arms
  • Cav
  • Cav1
  • Ccdc88a
  • Cpd
  • Depdc1b
  • Dlg5
  • Dsp
  • Dst
  • Epha2
  • Epsti1
  • Fam135a
  • Fam83b
  • Flot2
  • Frs2
  • Frs3
  • Grb7
  • Grlf1
  • Hop
  • Kidins220
  • Kif14
  • Muc13
  • P190A
  • Pik3r1
  • Pik3r2
  • Pkp4
  • Plekhg5
  • Plxna1
  • Ptpn13
  • RGD1310313
  • Rasal2
  • Rbm39
  • Rbmx
  • Rbmxrt
  • Reg1
  • Rnd1
  • Rras2
  • Scg10
  • Scgn10
  • Snt2
  • Soc
  • Stip1
  • Stmn2
  • Tech
  • Tfrc
  • Tmem59
  • Trfr
  • Trp
  • Txnl1
  • Ubxd5
  • Ubxn11
  • Vangl1
  • Vangl2
  • Wdr6
  • p190ARHOGAP
Rattus norvegicus (Norway rat)
Gluconeogenesis
  • Aldoa
  • Aldob
  • Aldoc
  • ENSRNOG00000066746
  • Eno-2
  • Eno-3
  • Eno2
  • Eno3
  • Eno4
  • Fbp
  • Fbp1
  • Fbp2
  • G6pc
  • G6pc1
  • G6pc3
  • G6pt
  • Gapd
  • Gapd-s
  • Gapdh
  • Gapdhs
  • Gapds
  • Gpi
  • Pc
  • Pck1
  • Pck2
  • Pgam1
  • Pgam2
  • Pgk-1
  • Pgk1
  • Pgk2
  • RGD1563601
  • Slc37a1
  • Slc37a2
  • Slc37a4
  • Tpi1
  • Tpi1l2
Rattus norvegicus (Norway rat)
Synthesis of IP2, IP, and Ins in the cytosol
  • Aldrl6
  • Imp
  • Impa1
  • Impa2
  • Ino1
  • Inpp1
  • Inpp4a
  • Inpp4b
  • Inpp5a
  • Inpp5b
  • Inpp5j
  • Isyna1
  • Ksp32
  • Miox
  • Ocrl
  • Pib5pa
  • Pipp
  • Rsor
  • Synj1
Rattus norvegicus (Norway rat)
Biosynthesis of the N-glycan precursor (dolichol lipid-linked oligosaccharide, LLO) and transfer to a nascent protein
  • Alg1
  • Alg12
  • Alg13
  • Alg14
  • Alg2
  • Alg3
  • Alg6
  • Alg8
  • Alg9
  • Dpagt1
  • Mpdu1
Rattus norvegicus (Norway rat)
Signaling by ALK
  • Alk
  • Alkal1
  • Alkal2
  • Fam150a
  • Irs-1
  • Irs1
  • Jak3
  • LOC100910984
  • Mdk
  • Pik3ca
  • Pik3cb
  • Pik3r1
  • Pik3r2
  • Plcg1
  • Ptn
  • Ptph6
  • Ptpn6
  • Shc1
  • Stat3
Rattus norvegicus (Norway rat)
MDK and PTN in ALK signaling
  • Alk
  • Mdk
  • Ptn
  • Ptprz
  • Ptprz1
  • Ptpz
Rattus norvegicus (Norway rat)
Synthesis of 12-eicosatetraenoic acid derivatives
  • Alox12
  • Alox12b
  • Alox12l
  • Alox15
  • Aloxe3
  • Gpx1
  • Gpx2
  • Gpx4
Rattus norvegicus (Norway rat)
Biosynthesis of DHA-derived SPMs
  • Alox12
  • Alox12l
  • Alox15
  • Cox-2
  • Cox2
  • Ptgs2
Rattus norvegicus (Norway rat)
Synthesis of 15-eicosatetraenoic acid derivatives
  • Alox12l
  • Alox15
  • Alox15b
  • Cox-2
  • Cox2
  • Gpx1
  • Gpx2
  • Gpx4
  • Ptgs2
Rattus norvegicus (Norway rat)
Biosynthesis of protectins
  • Alox12l
  • Alox15
  • Cyp1a-1
  • Cyp1a-2
  • Cyp1a1
  • Cyp1a2
  • Lta4h
Rattus norvegicus (Norway rat)
Synthesis of 5-eicosatetraenoic acids
  • Alox5
  • Alox5ap
  • Flap
  • Ltc4s
  • Pon
  • Pon1
  • Pon2
  • Pon3
Rattus norvegicus (Norway rat)
Biosynthesis of electrophilic ω-3 PUFA oxo-derivatives
  • Alox5
  • Cox-2
  • Cox2
  • Ptgs2
Rattus norvegicus (Norway rat)
Biosynthesis of maresins
  • Alox5
  • Ephx2
Rattus norvegicus (Norway rat)
Digestion
  • Alpi
  • Guc2c
  • Guca2
  • Guca2a
  • Guca2b
  • Gucy2c
  • Pir
Rattus norvegicus (Norway rat)
ALPK1 signaling pathway
  • Alpk1
  • LOC100360645
  • Map3k7
  • Map3k7ip2
  • Rps27a
  • Tab1
  • Tab2
  • Tab3
  • Tifa
  • Traf6
  • Uba80
  • Ubb
  • Ubbl1
  • Ubc
  • Ubcep1
  • Ubcl1
Rattus norvegicus (Norway rat)
RHOT2 GTPase cycle
  • Als2cr3
  • Arht2
  • Fzo1a
  • Fzo1b
  • Grif1
  • Mfn1
  • Mfn2
  • Myo19
  • Oip98
  • Rhot2
  • Trak1
  • Trak2
Rattus norvegicus (Norway rat)
Metabolism of polyamines
  • Amd1
  • Odc
  • Odc1
  • Sms
  • Sms-ps2
  • Srm
Rattus norvegicus (Norway rat)
Synthesis of UDP-N-acetyl-glucosamine
  • Amdhd2
  • Gfpt1
  • Gfpt2
  • Nagk
  • Pgm3
  • Renbp
  • Uap1
Rattus norvegicus (Norway rat)
Degradation of beta-catenin by the destruction complex
  • Amer1
  • Apc
  • Axin
  • Axin1
  • Btrc
  • Catnb
  • Csnk1a1
  • Ctnnb1
  • Cul1
  • Gsk3b
  • LOC100360606
  • LOC100360645
  • LOC100360846
  • LOC100365869
  • LOC100909468
  • Lmp10
  • Lmp2
  • Mecl1
  • Mss1
  • Ppp2ca
  • Ppp2cb
  • Ppp2r1a
  • Ppp2r1b
  • Ppp2r5a
  • Ppp2r5b
  • Ppp2r5c
  • Ppp2r5d
  • Ppp2r5e
  • Psma1
  • Psma2
  • Psma3
  • Psma4
  • Psma5
  • Psma6
  • Psma7
  • Psma8
  • Psmb1
  • Psmb10
  • Psmb2
  • Psmb3
  • Psmb4
  • Psmb5
  • Psmb6
  • Psmb6l
  • Psmb6l1
  • Psmb7
  • Psmb8
  • Psmb9
  • Psmc1
  • Psmc2
  • Psmc3
  • Psmc4
  • Psmc5
  • Psmc6
  • Psmd1
  • Psmd10
  • Psmd11
  • Psmd12
  • Psmd13
  • Psmd14
  • Psmd2
  • Psmd3
  • Psmd5
  • Psmd6
  • Psmd7
  • Psmd8
  • Psmd9
  • Psme1
  • Psme2
  • Psme4
  • Psmf1
  • Rbx1
  • Ring12
  • Rps27a
  • Skp1
  • Skp1a
  • Sug1
  • Tbp1
  • Tbp7
  • Uba80
  • Ubb
  • Ubbl1
  • Ubc
  • Ubcep1
  • Ubcl1
  • Zranb1
Rattus norvegicus (Norway rat)
Disassembly of the destruction complex and recruitment of AXIN to the membrane
  • Amer1
  • Apc
  • Axin
  • Axin1
  • Catnb
  • Cav
  • Cav1
  • Csnk1a1
  • Ctnnb1
  • Dvl1
  • Dvl2
  • Dvl3
  • Frat1
  • Frat2
  • Fzd1
  • Fzd2
  • Fzd5
  • Gsk3b
  • LOC100361515
  • LOC100909468
  • LOC679110
  • Lrp5
  • Lrp6
  • Ppp2ca
  • Ppp2cb
  • Ppp2r1a
  • Ppp2r1b
  • Ppp2r5a
  • Ppp2r5b
  • Ppp2r5c
  • Ppp2r5d
  • Ppp2r5e
  • Wnt1
  • Wnt3a
  • Wnt8a
  • Wnt8b
Rattus norvegicus (Norway rat)
Beta-catenin phosphorylation cascade
  • Amer1
  • Apc
  • Axin
  • Axin1
  • Catnb
  • Csnk1a1
  • Ctnnb1
  • Frat1
  • Frat2
  • Gsk3b
  • LOC100909468
  • LOC679110
  • Ppp2ca
  • Ppp2cb
  • Ppp2r1a
  • Ppp2r1b
  • Ppp2r5a
  • Ppp2r5b
  • Ppp2r5c
  • Ppp2r5d
  • Ppp2r5e
Rattus norvegicus (Norway rat)
N-glycan trimming in the ER and Calnexin/Calreticulin cycle
  • Amfr
  • Derl1
  • Engase
  • LOC100360645
  • Ngly1
  • Psmc1
  • Rad23b
  • Rps27a
  • Saks1
  • Uba80
  • Ubb
  • Ubbl1
  • Ubc
  • Ubcep1
  • Ubcl1
  • Ubxn1
  • Vcp
Rattus norvegicus (Norway rat)
RUNX1 regulates genes involved in megakaryocyte differentiation and platelet function
  • Aml1
  • Ash2l
  • Cbfa2
  • Cbfb
  • ENSRNOG00000062927
  • ENSRNOG00000064540
  • ENSRNOG00000066901
  • ENSRNOG00000068034
  • Ep300
  • Gata1
  • H2ab3
  • H2ac10
  • H2ac18
  • H2ac4
  • H2afb3
  • H2afx
  • H2aj
  • H2ax
  • H2az2
  • H2bc1
  • H2bc12l1
  • H2bc6
  • H2bcl1
  • H2bcl2
  • H2bu1
  • H3-3b
  • H3.3b
  • H3c13
  • H3f3b
  • H4c16
  • H4c2
  • H4f16
  • H4ft
  • Hdac1
  • Hist1h2ba
  • Hist1h2bc
  • Hist1h2bg
  • Hist1h2bo
  • Hist1h2bq
  • Hist1h4b
  • Hist1h4m
  • Hist2h2aa3
  • Hist2h3c2
  • Hist4
  • Hist4h4
  • Hrmt1l2
  • Kat2b
  • Kmt2a
  • Kmt2b
  • Kmt2c
  • LOC100365043
  • LOC100910200
  • LOC120097726
  • LOC684797
  • Mll
  • Mll1
  • Prmt1
  • Rbbp5
  • Runx1
  • Setd1a
  • Setd1b
  • Sin3a
  • Sin3b
  • Th2b
  • Wdr5
  • Zfpm1
Rattus norvegicus (Norway rat)
RUNX1 regulates transcription of genes involved in differentiation of myeloid cells
  • Aml1
  • Cbfa2
  • Cbfb
  • Cbp
  • Crebbp
  • Runx1
Rattus norvegicus (Norway rat)

About Release Notes Help Feedback

International Collaboration

GlyCosmos is a member of the GlySpace Alliance together with GlyGen and Glycomics@ExPASy.

Acknowledgements

Supported by JST NBDC Grant Number JPMJND2204

Partly supported by NIH Common Fund Grant #1U01GM125267-01


Logo License Policies Site Map

Contact: support@glycosmos.org

This work is licensed under Creative Commons Attribution 4.0 International


GlyCosmos Portal v4.0.0

Last updated: August 19, 2024