GlyCosmos Pathways

Integrated of pathway data, containing glycoproteins and glycans obtained from Reactome and the Metabolism of carbohydrates in Escherichia coli O-antigens obtained from ECODAB. Search by pathway name, species, and protein name.

Source Last Updated
Reactome March 20, 2024
ECODAB April 1, 2019
Displaying entries 626 - 650 of 1070 in total
Pathway Name Protein Name UniProt ID Gene Symbol Organism GlyTouCan ID
Transport of the SLBP Dependant Mature mRNA
  • Aaas
  • Alyref
  • Cbp20
  • Cbp80
  • Eif4e
  • Gp210
  • LOC683983
  • Mrnp41
  • Ncbp1
  • Ncbp2
  • Ndc1
  • Npap60
  • Nup107
  • Nup121
  • Nup133
  • Nup153
  • Nup155
  • Nup160
  • Nup188
  • Nup205
  • Nup210
  • Nup214
  • Nup35
  • Nup37
  • Nup42
  • Nup43
  • Nup50
  • Nup53
  • Nup54
  • Nup58
  • Nup62
  • Nup84
  • Nup85
  • Nup88
  • Nup93
  • Nup98
  • Nupl1
  • Nupl2
  • Nxf1
  • Pcnt1
  • Pom121
  • Pom210
  • Rae1
  • Ranbp2
  • Sec13
  • Sec13l1
  • Slbp
  • Tap
  • Tmem48
  • Tpr
Rattus norvegicus (Norway rat)
Highly calcium permeable postsynaptic nicotinic acetylcholine receptors
  • Acra
  • Acra2
  • Acra3
  • Acra4
  • Acra5
  • Acra6
  • Acra7
  • Acra9
  • Acrb2
  • Acrb3
  • Acrb4
  • Chrna1
  • Chrna2
  • Chrna3
  • Chrna4
  • Chrna5
  • Chrna6
  • Chrna7
  • Chrna9
  • Chrnb2
  • Chrnb3
  • Chrnb4
Rattus norvegicus (Norway rat)
Calcineurin activates NFAT
  • CaMIII
  • Calm3
  • Calna
  • Cam3
  • Camc
  • Cna2
  • Cnb
  • Fkbp1
  • Fkbp1a
  • Nfat4
  • Nfatc1
  • Nfatc2
  • Nfatc3
  • Ppp3ca
  • Ppp3cb
  • Ppp3r1
  • RGD1560225
Rattus norvegicus (Norway rat)
Vitamin C (ascorbate) metabolism
  • Cyb5
  • Cyb5a
  • Cyb5r3
  • Dia1
  • Glut1
  • Glut3
  • Gsto1
  • Gsto2
  • Slc23a1
  • Slc23a2
  • Slc2a1
  • Slc2a3
  • Svct1
  • Svct2
Rattus norvegicus (Norway rat)
FGFRL1 modulation of FGFR1 signaling
  • FGF22
  • Fgf-2
  • Fgf-5
  • Fgf10
  • Fgf17
  • Fgf18
  • Fgf2
  • Fgf22
  • Fgf23
  • Fgf3
  • Fgf4
  • Fgf5
  • Fgf5c
  • Fgf5d
  • Fgf7a
  • Fgf8
  • Fgfrl1
  • Spred1
  • Spred2
Rattus norvegicus (Norway rat)
Zinc influx into cells by the SLC39 gene family
  • Slc39a1
  • Slc39a14
  • Slc39a2
  • Slc39a3
  • Slc39a4
  • Slc39a6
  • Slc39a8
  • Zip3
  • Zip4
  • Zip6
  • Zip8
Rattus norvegicus (Norway rat)
Voltage gated Potassium channels
  • Ckbeta2
  • Ckbeta3
  • Eag
  • Eag2
  • Elk1
  • Elk2
  • Elk3
  • Erg
  • Erg2
  • Erg3
  • Kcna1
  • Kcna10
  • Kcna2
  • Kcna3
  • Kcna4
  • Kcna5
  • Kcna6
  • Kcna7
  • Kcna9
  • Kcnab1
  • Kcnab2
  • Kcnab3
  • Kcnb1
  • Kcnb2
  • Kcnb3
  • Kcnc1
  • Kcnc2
  • Kcnc3
  • Kcnc4
  • Kcnd1
  • Kcnd2
  • Kcnd3
  • Kcnf1
  • Kcng1
  • Kcng2
  • Kcng3
  • Kcng4
  • Kcnh1
  • Kcnh2
  • Kcnh3
  • Kcnh4
  • Kcnh5
  • Kcnh6
  • Kcnh7
  • Kcnh8
  • Kcnq1
  • Kcnq5
  • Kcns1
  • Kcns2
  • Kcns3
  • Kcnv1
  • Kcnv2
  • Kvb1
  • Kvlqt1
Rattus norvegicus (Norway rat)
Neurotransmitter clearance
  • Oct1
  • Oct2
  • Slc22a1
  • Slc22a2
Rattus norvegicus (Norway rat)
TRP channels
  • Anktm1
  • Cat2
  • Cmr1
  • Ecac
  • Ecac1
  • Ltrpc4
  • Mcoln1
  • Mcoln2
  • Mcoln3
  • Sac2b
  • Trp1
  • Trpa1
  • Trpc1
  • Trpc3
  • Trpc4
  • Trpc5
  • Trpc7
  • Trpm1
  • Trpm2
  • Trpm3
  • Trpm4
  • Trpm5
  • Trpm6
  • Trpm7
  • Trpm8
  • Trpv1
  • Trpv2
  • Trpv3
  • Trpv4
  • Trpv5
  • Trpv6
  • Trrp3
  • Vr1
  • Vr1l
  • Vrl1
  • Vroac
Rattus norvegicus (Norway rat)
Glycoprotein hormones
  • Cga
  • Cga1
  • Fshb
  • Inha
  • Inhba
  • Inhbb
  • Inhbc
  • Inhbe
  • Lhb
  • Tshb
Rattus norvegicus (Norway rat)
DSCAM interactions
  • Dscam
  • Dscaml1
Rattus norvegicus (Norway rat)
Smooth Muscle Contraction
  • Acta2
  • Acta3
  • Actg2
  • Actsa
  • Actsg
  • Actvs
  • Aldh2
  • Alpha-tm
  • CaMIII
  • Cald1
  • Calm3
  • Cam3
  • Camc
  • Guc1a1
  • Guc1b3
  • Gucy1a1
  • Gucy1a2
  • Gucy1a3
  • Gucy1b1
  • Gucy1b2
  • Gucy1b3
  • Itga1
  • Itgb5
  • LOC685883
  • Lmod1
  • Mrlc2
  • Mrlcb
  • Myl10
  • Myl11
  • Myl12b
  • Myl6
  • Myl7
  • Myl9
  • Mylc2b
  • Mylk
  • Mylpf
  • Myrl2
  • Pak1
  • Pak2
  • Pde5
  • Pde5a
  • Pxn
  • Rlc-a
  • Tln1
  • Tpm1
  • Tpm2
  • Tpm4
  • Tpma
  • Vcl
Rattus norvegicus (Norway rat)
Sulfur amino acid metabolism
  • Ahcy
  • Ams1
  • Bhmt
  • Bhmt2
  • Mat1a
  • Mtr
  • Mtrr
Rattus norvegicus (Norway rat)
DNA Damage/Telomere Stress Induced Senescence
  • Acd
  • Atm
  • Ccna1
  • Ccna2
  • Ccne
  • Ccne1
  • Ccne2
  • Cdk2
  • Cdkn1a
  • Cdkn1b
  • Cdkn2
  • ENSRNOG00000062927
  • ENSRNOG00000064540
  • ENSRNOG00000066901
  • ENSRNOG00000068034
  • Ep400
  • H2ab3
  • H2ac10
  • H2ac18
  • H2ac4
  • H2afb3
  • H2afx
  • H2aj
  • H2ax
  • H2az2
  • H2bc1
  • H2bc12l1
  • H2bc6
  • H2bcl1
  • H2bcl2
  • H2bu1
  • H4c16
  • H4c2
  • H4f16
  • H4ft
  • Hist1h2ba
  • Hist1h2bc
  • Hist1h2bg
  • Hist1h2bo
  • Hist1h2bq
  • Hist1h4b
  • Hist1h4m
  • Hist2h2aa3
  • Hist4
  • Hist4h4
  • Htatip
  • Kat5
  • LOC100365043
  • LOC100910200
  • LOC120097726
  • LOC684797
  • Mre11
  • Mre11a
  • Nbn
  • Nbs1
  • P53
  • Pot1
  • Rad50
  • Rap1
  • Terf2
  • Terf2ip
  • Th2b
  • Tip60
  • Tip60b
  • Tp53
  • p27Kip1
Rattus norvegicus (Norway rat)
Translesion Synthesis by POLH
  • LOC100360645
  • Npl4
  • Nploc4
  • Pcna
  • Polh
  • Rfc1
  • Rfc2
  • Rfc3
  • Rfc4
  • Rfc5
  • Rpa1
  • Rpa2
  • Rpa3
  • Rps27a
  • Sprtn
  • Uba80
  • Ubb
  • Ubbl1
  • Ubc
  • Ubcep1
  • Ubcl1
  • Ufd1
  • Ufd1l
  • Vcp
Rattus norvegicus (Norway rat)
Assembly of active LPL and LIPC lipase complexes
  • Angptl3
  • Angptl4
  • Angptl8
  • Fur
  • Furin
  • Gpihbp1
  • Lipc
  • Lmf1
  • Lmf2
  • Lpl
  • Pace4
  • Pcsk3
  • Pcsk5
  • Pcsk6
Rattus norvegicus (Norway rat)
IRS activation
  • Grb10
  • Ins-1
  • Ins1
  • Insr
  • Irs-1
  • Irs1
  • Irs2
Rattus norvegicus (Norway rat)
Cation-coupled Chloride cotransporters
  • Kcc1
  • Kcc2
  • Kcc4
  • Nkcc2
  • Slc12a1
  • Slc12a2
  • Slc12a3
  • Slc12a4
  • Slc12a5
  • Slc12a6
  • Slc12a7
  • Tsc
Rattus norvegicus (Norway rat)
Peroxisomal lipid metabolism
  • Acbd4
  • Acbd5
  • Hao2
  • Hao3
  • Haox2
  • Nudt19
Rattus norvegicus (Norway rat)
Mitochondrial calcium ion transport
  • Cbara1
  • Efha1
  • Mcu
  • Mcub
  • Micu1
  • Micu2
  • Micu3
  • Nckx6
  • Nclx
  • Slc24a6
  • Slc8b1
  • Smdt1
  • Smhs2
Rattus norvegicus (Norway rat)
Interleukin-27 signaling
  • Canx
  • Crlf1
  • Ebi3
  • Il27
  • Il6st
  • Jak1
  • Jak2
  • Stat1
  • Stat3
  • Stat4
  • Tyk2
Rattus norvegicus (Norway rat)
Negative regulation of MAPK pathway
  • A-raf
  • Araf
  • Araf1
  • Braf
  • Brap
  • Cl100
  • Dusp1
  • Dusp10
  • Dusp16
  • Dusp4
  • Dusp5
  • Dusp6
  • Dusp7
  • Dusp8
  • Dusp9
  • ENSRNOG00000069024
  • Erk1
  • Erk2
  • Hras
  • Hras1
  • Kras
  • Kras2
  • Ksr1
  • LOC100360645
  • LOC100909468
  • Lcptp
  • Mapk
  • Mapk1
  • Mapk12
  • Mapk3
  • Mark3
  • Mkp1
  • Mkp2
  • Mkp3
  • Mkpx
  • Nras
  • Pbp
  • Pebp
  • Pebp1
  • Ppp2ca
  • Ppp2cb
  • Ppp2r1a
  • Ppp2r1b
  • Ppp2r5a
  • Ppp2r5b
  • Ppp2r5c
  • Ppp2r5d
  • Ppp2r5e
  • Ppp5c
  • Prkm1
  • Prkm3
  • Ptpn16
  • Ptpn3
  • Ptpn7
  • Raf
  • Raf1
  • Rps27a
  • Sapk3
  • Uba80
  • Ubb
  • Ubbl1
  • Ubc
  • Ubcep1
  • Ubcl1
  • Ywhab
Rattus norvegicus (Norway rat)
Nuclear Envelope Breakdown
  • Baf
  • Banf1
  • Emd
  • L2bp1
  • Rbm39
  • Vrk1
  • Vrk2
Rattus norvegicus (Norway rat)
Proton-coupled monocarboxylate transport
  • Bsg
  • Emb
  • Gp70
  • Mct1
  • Mct2
  • Mct3
  • Mct4
  • Slc16a1
  • Slc16a3
  • Slc16a7
  • Slc16a8
Rattus norvegicus (Norway rat)
SUMOylation of RNA binding proteins
  • Aaas
  • Cbx2
  • Cbx4
  • Cbx8
  • Gp210
  • Hnrnpc
  • Hnrnpk
  • Hnrpc
  • Hnrpk
  • LOC683983
  • Mrnp41
  • Nap65
  • Ndc1
  • Nol5
  • Nop5
  • Nop58
  • Npap60
  • Nup107
  • Nup121
  • Nup133
  • Nup153
  • Nup155
  • Nup160
  • Nup188
  • Nup205
  • Nup210
  • Nup214
  • Nup35
  • Nup37
  • Nup42
  • Nup43
  • Nup50
  • Nup53
  • Nup54
  • Nup58
  • Nup62
  • Nup84
  • Nup85
  • Nup88
  • Nup93
  • Nup98
  • Nupl1
  • Nupl2
  • Pcnt1
  • Phc1
  • Phc2
  • Phc3
  • Pom121
  • Pom210
  • Rae1
  • Ranbp2
  • Ring1
  • Ring1b
  • Rnf1
  • Rnf2
  • Scml2
  • Sec13
  • Sec13l1
  • Smt3a
  • Smt3h2
  • Sumo1
  • Sumo2
  • Tmem48
  • Tpr
  • Ubce9
  • Ube2i
Rattus norvegicus (Norway rat)

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GlyCosmos is a member of the GlySpace Alliance together with GlyGen and Glycomics@ExPASy.

Acknowledgements

Supported by JST NBDC Grant Number JPMJND2204

Partly supported by NIH Common Fund Grant #1U01GM125267-01


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Last updated: August 19, 2024