GlyCosmos Pathways

Integrated of pathway data, containing glycoproteins and glycans obtained from Reactome and the Metabolism of carbohydrates in Escherichia coli O-antigens obtained from ECODAB. Search by pathway name, species, and protein name.

Source Last Updated
Reactome March 20, 2024
ECODAB April 1, 2019
Displaying entries 76 - 100 of 1070 in total
Pathway Name ▼ Protein Name UniProt ID Gene Symbol Organism GlyTouCan ID
Transcriptional activation of mitochondrial biogenesis
  • AC128290.1
  • Acss2
  • Cycs
  • Cycsl2
  • Cycsl3
  • Gabpa
  • Gabpb1
  • Glud
  • Glud1
  • Idh2
  • LOC690675
  • RGD1562558
  • SIRT4
  • Sirt3
  • Sirt4
  • Sirt5
  • Sod2
Rattus norvegicus (Norway rat)
Trafficking of GluR2-containing AMPA receptors
  • Adtab
  • Ap17
  • Ap2a1
  • Ap2a2
  • Ap2b1
  • Ap2m1
  • Ap2s1
  • Clapb1
  • Claps2
  • Erg1
  • GluA1
  • GluA2
  • GluA3
  • Glur1
  • Glur2
  • Glur3
  • Glur4
  • Gria1
  • Gria2
  • Gria3
  • Gria4
  • Grip1
  • Grip2
  • Nsf
  • Pick1
  • Pkca
  • Pkcb
  • Pkcc
  • Pkcg
  • Prkca
  • Prkcabp
  • Prkcb
  • Prkcb1
  • Prkcc
  • Prkcg
  • Tspan7
Rattus norvegicus (Norway rat)
Trafficking of AMPA receptors
  • Akap150
  • Akap5
  • Cacng2
  • Cacng3
  • Cacng4
  • Cacng8
  • Camk2a
  • Camk2b
  • Camk2d
  • Camk2g
  • Dlg1
  • Dlg4
  • Dlgh1
  • Dlgh4
  • Epb4.1l1
  • Epb41l1
  • GluA1
  • GluA3
  • Glur1
  • Glur3
  • Glur4
  • Gria1
  • Gria3
  • Gria4
  • Mdm2
  • Myo6
  • Psd95
  • Stg
Rattus norvegicus (Norway rat)
Trafficking and processing of endosomal TLR
  • Cnpy3
  • Cts7l2
  • Ctsb
  • Ctsk
  • Ctsl
  • Ctsl1
  • Ctsll3
  • Ctss
  • Grp94
  • Hsp90b1
  • Hspc4
  • Lgmn
  • Prsc1
  • RGD1308751
  • Tlr7
  • Tlr8
  • Tlr9
  • Tra1
  • Unc93b1
Rattus norvegicus (Norway rat)
Toll Like Receptor 9 (TLR9) Cascade
  • Eea1
  • Pik3c3
  • Pik3r4
  • Rbsn
  • Tlr9
  • Vps34
  • Zfyve20
Rattus norvegicus (Norway rat)
Toll Like Receptor 7/8 (TLR7/8) Cascade
  • Tlr7
Rattus norvegicus (Norway rat)
Toll Like Receptor 4 (TLR4) Cascade
  • Bpi
  • Cd14
  • Cd180
  • Dnm
  • Dnm1
  • Dnm2
  • Dnm3
  • Dyn2
  • Dyn3
  • Lbp
  • Ly86
  • Ly96
  • Plcg2
  • Ptpn4
  • Ticam2
  • Tlr4
Rattus norvegicus (Norway rat)
Toll Like Receptor 10 (TLR10) Cascade
  • Tlr10
Rattus norvegicus (Norway rat)
Tight junction interactions
  • F11r
  • Jam1
  • Par-6a
  • Par3
  • Par6a
  • Pard3
  • Pard6a
  • Pard6b
  • Pard6g
  • Pkcl
  • Prkci
Rattus norvegicus (Norway rat)
Tie2 Signaling
  • Agpt2
  • Angpt1
  • Angpt2
  • Angpt4
  • Ash
  • Dok2
  • Grb14
  • Grb2
  • Grb7
  • Hras
  • Hras1
  • Kras
  • Kras2
  • Nras
  • Pik3ca
  • Pik3cb
  • Pik3r1
  • Pik3r2
  • Ptpn11
  • Shc1
  • Sos1
  • Tek
Rattus norvegicus (Norway rat)
Thyroxine biosynthesis
  • Cga
  • Cga1
  • Dehal1
  • Duox1
  • Duox2
  • Iyd
  • Lnox2
  • Nis
  • Slc5a5
  • Thox2
  • Tpo
  • Tshb
Rattus norvegicus (Norway rat)
Thromboxane signalling through TP receptor
  • Aamp
  • Gna11
  • Gna13
  • Gna14
  • Gna15
  • Gnaq
  • Gnb1
  • Gnb2
  • Gnb3
  • Gnb4
  • Gnb5
  • Gng10-ps1
  • Gng11
  • Gng12
  • Gng3
  • Gng4
  • Gng5
  • Gng5-ps4
  • Gng7
  • Gng8
  • Gng9
  • Gngt1
  • Gngt11
  • Gngt5
  • Gngt7
  • Gngt9
  • Tbxa2r
Rattus norvegicus (Norway rat)
Thrombin signalling through proteinase activated receptors (PARs)
  • Arrb1
  • Arrb2
  • Erk1
  • Erk2
  • F2
  • F2r
  • F2rl2
  • F2rl3
  • Gna11
  • Gna14
  • Gna15
  • Gnaq
  • Gnb1
  • Gnb2
  • Gnb3
  • Gnb4
  • Gnb5
  • Gng10-ps1
  • Gng11
  • Gng12
  • Gng3
  • Gng4
  • Gng5
  • Gng5-ps4
  • Gng7
  • Gng8
  • Gng9
  • Gngt1
  • Gngt11
  • Gngt5
  • Gngt7
  • Gngt9
  • Mapk
  • Mapk1
  • Mapk3
  • Par1
  • Par3
  • Par4
  • Prkm1
  • Prkm3
  • Src
Rattus norvegicus (Norway rat)
The role of GTSE1 in G2/M progression after G2 checkpoint
  • Ccnb1
  • Ccnb2
  • Ccnb2-ps2
  • Cdc2
  • Cdc2a
  • Cdk1
  • Cdkn1
  • Cdkn1a
  • Fkbpl
  • Gtse1
  • Hsp84
  • Hsp86
  • Hsp90aa1
  • Hsp90ab1
  • Hspc3
  • Hspca
  • Hspcb
  • LOC100360645
  • LOC100360846
  • LOC100365869
  • Lmp10
  • Lmp2
  • Mapre1
  • Mecl1
  • Mss1
  • P53
  • Plk
  • Plk1
  • Psma1
  • Psma2
  • Psma3
  • Psma4
  • Psma5
  • Psma6
  • Psma7
  • Psma8
  • Psmb1
  • Psmb10
  • Psmb2
  • Psmb3
  • Psmb4
  • Psmb5
  • Psmb6
  • Psmb6l
  • Psmb6l1
  • Psmb7
  • Psmb8
  • Psmb9
  • Psmc1
  • Psmc2
  • Psmc3
  • Psmc4
  • Psmc5
  • Psmc6
  • Psmd1
  • Psmd10
  • Psmd11
  • Psmd12
  • Psmd13
  • Psmd14
  • Psmd2
  • Psmd3
  • Psmd5
  • Psmd6
  • Psmd7
  • Psmd8
  • Psmd9
  • Psme1
  • Psme2
  • Psme4
  • Psmf1
  • Ring12
  • Rps27a
  • Sug1
  • Tbp1
  • Tbp7
  • Tp53
  • Uba80
  • Ubb
  • Ubbl1
  • Ubc
  • Ubcep1
  • Ubcl1
Rattus norvegicus (Norway rat)
The retinoid cycle in cones (daylight vision)
  • Awat2
  • Bcp
  • Gcp
  • Opn1mw
  • Opn1sw
  • Rbp3
  • Rlbp1
Rattus norvegicus (Norway rat)
The canonical retinoid cycle in rods (twilight vision)
  • Cyp4v2
  • Cyp4v3
  • Lrat
  • Myo7a
  • Rbp-1
  • Rbp1
  • Rbp3
  • Rbp4
  • Rdh10
  • Rdh11
  • Rdh12
  • Rho
  • Rlbp1
  • Rpe65
  • Stra6
  • Tt
  • Ttr
Rattus norvegicus (Norway rat)
The activation of arylsulfatases
  • AABR07013255.1
  • Arsa
  • Arsb
  • Arse
  • Arsg
  • Arsi
  • Arsj
  • Arsk
  • Arsl
  • Sts
  • Sumf1
  • Sumf2
Rattus norvegicus (Norway rat)
The NLRP3 inflammasome
  • Hsp84
  • Hsp90ab1
  • Hspc3
  • Hspcb
  • Mefv
  • Nlrp3
  • P2rx7
  • Panx1
  • Pstpip1
  • Px1
  • Pycard
  • Sugt1
  • Txn
  • Txn1
  • Txnip
  • Vdup1
Rattus norvegicus (Norway rat)
Tetrahydrobiopterin (BH4) synthesis, recycling, salvage and regulation
  • Akt1
  • CaMIII
  • Calm3
  • Cam3
  • Camc
  • Gch
  • Gch1
  • Gchfr
  • Gfrp
  • Hsp86
  • Hsp90aa1
  • Hspca
  • Nos3
  • Prkg2
  • Pts
  • Spr
Rattus norvegicus (Norway rat)
Termination of O-glycan biosynthesis
  • AC096792.1
  • Muc1
  • Muc13
  • Muc15
  • Muc19
  • Muc2
  • Muc20
  • Muc4
  • Muc5ac
  • Muc5b
  • Muc6
  • Siat1
  • Siat4b
  • Siat4c
  • Siat5
  • Siat6
  • Siat7c
  • Smc
  • St3gal1
  • St3gal2
  • St3gal3
  • St3gal4
  • St6gal1
  • St6galnac2
  • St6galnac3
  • St6galnac4
  • siat7B
Rattus norvegicus (Norway rat)
Terminal pathway of complement
  • C5
  • C6
Rattus norvegicus (Norway rat)
Telomere Extension By Telomerase
  • Acd
  • Ankrd28
  • Ccna1
  • Ccna2
  • Cdk2
  • Cdkn2
  • Dkc1
  • Gar1
  • LOC100360065
  • Nap57
  • Nola1
  • Nop10
  • Pif1
  • Pot1
  • Ppp6c
  • Ppp6r3
  • Ppp6r3-ps1
  • Ppv
  • Rap1
  • Rtel1
  • Saps3-ps1
  • Shq1
  • Tcab1
  • Terf2
  • Terf2ip
  • Tert
  • Wdr79
  • Wrap53
Rattus norvegicus (Norway rat)
Tandem pore domain halothane-inhibited K+ channel (THIK)
  • Kcnk13
Rattus norvegicus (Norway rat)
Tandem of pore domain in a weak inwardly rectifying K+ channels (TWIK)
  • Kcnk1
  • Kcnk6
  • Kcnk7
Rattus norvegicus (Norway rat)
Tachykinin receptors bind tachykinins
  • Nka
  • Nkna
  • Nknb
  • Tac1
  • Tac1r
  • Tac2
  • Tac2r
  • Tac3
  • Tac3r
  • Tacr1
  • Tacr2
  • Tacr3
Rattus norvegicus (Norway rat)

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GlyCosmos is a member of the GlySpace Alliance together with GlyGen and Glycomics@ExPASy.

Acknowledgements

Supported by JST NBDC Grant Number JPMJND2204

Partly supported by NIH Common Fund Grant #1U01GM125267-01


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Last updated: August 19, 2024