GlyCosmos Pathways

Integrated of pathway data, containing glycoproteins and glycans obtained from Reactome and the Metabolism of carbohydrates in Escherichia coli O-antigens obtained from ECODAB. Search by pathway name, species, and protein name.

Source Last Updated
Reactome March 20, 2024
ECODAB April 1, 2019
Displaying entries 976 - 1000 of 1070 in total
Pathway Name ▲ Protein Name UniProt ID Gene Symbol Organism GlyTouCan ID
Termination of O-glycan biosynthesis
  • AC096792.1
  • Muc1
  • Muc13
  • Muc15
  • Muc19
  • Muc2
  • Muc20
  • Muc4
  • Muc5ac
  • Muc5b
  • Muc6
  • Siat1
  • Siat4b
  • Siat4c
  • Siat5
  • Siat6
  • Siat7c
  • Smc
  • St3gal1
  • St3gal2
  • St3gal3
  • St3gal4
  • St6gal1
  • St6galnac2
  • St6galnac3
  • St6galnac4
  • siat7B
Rattus norvegicus (Norway rat)
Tetrahydrobiopterin (BH4) synthesis, recycling, salvage and regulation
  • Akt1
  • CaMIII
  • Calm3
  • Cam3
  • Camc
  • Gch
  • Gch1
  • Gchfr
  • Gfrp
  • Hsp86
  • Hsp90aa1
  • Hspca
  • Nos3
  • Prkg2
  • Pts
  • Spr
Rattus norvegicus (Norway rat)
The NLRP3 inflammasome
  • Hsp84
  • Hsp90ab1
  • Hspc3
  • Hspcb
  • Mefv
  • Nlrp3
  • P2rx7
  • Panx1
  • Pstpip1
  • Px1
  • Pycard
  • Sugt1
  • Txn
  • Txn1
  • Txnip
  • Vdup1
Rattus norvegicus (Norway rat)
The activation of arylsulfatases
  • AABR07013255.1
  • Arsa
  • Arsb
  • Arse
  • Arsg
  • Arsi
  • Arsj
  • Arsk
  • Arsl
  • Sts
  • Sumf1
  • Sumf2
Rattus norvegicus (Norway rat)
The canonical retinoid cycle in rods (twilight vision)
  • Cyp4v2
  • Cyp4v3
  • Lrat
  • Myo7a
  • Rbp-1
  • Rbp1
  • Rbp3
  • Rbp4
  • Rdh10
  • Rdh11
  • Rdh12
  • Rho
  • Rlbp1
  • Rpe65
  • Stra6
  • Tt
  • Ttr
Rattus norvegicus (Norway rat)
The retinoid cycle in cones (daylight vision)
  • Awat2
  • Bcp
  • Gcp
  • Opn1mw
  • Opn1sw
  • Rbp3
  • Rlbp1
Rattus norvegicus (Norway rat)
The role of GTSE1 in G2/M progression after G2 checkpoint
  • Ccnb1
  • Ccnb2
  • Ccnb2-ps2
  • Cdc2
  • Cdc2a
  • Cdk1
  • Cdkn1
  • Cdkn1a
  • Fkbpl
  • Gtse1
  • Hsp84
  • Hsp86
  • Hsp90aa1
  • Hsp90ab1
  • Hspc3
  • Hspca
  • Hspcb
  • LOC100360645
  • LOC100360846
  • LOC100365869
  • Lmp10
  • Lmp2
  • Mapre1
  • Mecl1
  • Mss1
  • P53
  • Plk
  • Plk1
  • Psma1
  • Psma2
  • Psma3
  • Psma4
  • Psma5
  • Psma6
  • Psma7
  • Psma8
  • Psmb1
  • Psmb10
  • Psmb2
  • Psmb3
  • Psmb4
  • Psmb5
  • Psmb6
  • Psmb6l
  • Psmb6l1
  • Psmb7
  • Psmb8
  • Psmb9
  • Psmc1
  • Psmc2
  • Psmc3
  • Psmc4
  • Psmc5
  • Psmc6
  • Psmd1
  • Psmd10
  • Psmd11
  • Psmd12
  • Psmd13
  • Psmd14
  • Psmd2
  • Psmd3
  • Psmd5
  • Psmd6
  • Psmd7
  • Psmd8
  • Psmd9
  • Psme1
  • Psme2
  • Psme4
  • Psmf1
  • Ring12
  • Rps27a
  • Sug1
  • Tbp1
  • Tbp7
  • Tp53
  • Uba80
  • Ubb
  • Ubbl1
  • Ubc
  • Ubcep1
  • Ubcl1
Rattus norvegicus (Norway rat)
Thrombin signalling through proteinase activated receptors (PARs)
  • Arrb1
  • Arrb2
  • Erk1
  • Erk2
  • F2
  • F2r
  • F2rl2
  • F2rl3
  • Gna11
  • Gna14
  • Gna15
  • Gnaq
  • Gnb1
  • Gnb2
  • Gnb3
  • Gnb4
  • Gnb5
  • Gng10-ps1
  • Gng11
  • Gng12
  • Gng3
  • Gng4
  • Gng5
  • Gng5-ps4
  • Gng7
  • Gng8
  • Gng9
  • Gngt1
  • Gngt11
  • Gngt5
  • Gngt7
  • Gngt9
  • Mapk
  • Mapk1
  • Mapk3
  • Par1
  • Par3
  • Par4
  • Prkm1
  • Prkm3
  • Src
Rattus norvegicus (Norway rat)
Thromboxane signalling through TP receptor
  • Aamp
  • Gna11
  • Gna13
  • Gna14
  • Gna15
  • Gnaq
  • Gnb1
  • Gnb2
  • Gnb3
  • Gnb4
  • Gnb5
  • Gng10-ps1
  • Gng11
  • Gng12
  • Gng3
  • Gng4
  • Gng5
  • Gng5-ps4
  • Gng7
  • Gng8
  • Gng9
  • Gngt1
  • Gngt11
  • Gngt5
  • Gngt7
  • Gngt9
  • Tbxa2r
Rattus norvegicus (Norway rat)
Thyroxine biosynthesis
  • Cga
  • Cga1
  • Dehal1
  • Duox1
  • Duox2
  • Iyd
  • Lnox2
  • Nis
  • Slc5a5
  • Thox2
  • Tpo
  • Tshb
Rattus norvegicus (Norway rat)
Tie2 Signaling
  • Agpt2
  • Angpt1
  • Angpt2
  • Angpt4
  • Ash
  • Dok2
  • Grb14
  • Grb2
  • Grb7
  • Hras
  • Hras1
  • Kras
  • Kras2
  • Nras
  • Pik3ca
  • Pik3cb
  • Pik3r1
  • Pik3r2
  • Ptpn11
  • Shc1
  • Sos1
  • Tek
Rattus norvegicus (Norway rat)
Tight junction interactions
  • F11r
  • Jam1
  • Par-6a
  • Par3
  • Par6a
  • Pard3
  • Pard6a
  • Pard6b
  • Pard6g
  • Pkcl
  • Prkci
Rattus norvegicus (Norway rat)
Toll Like Receptor 10 (TLR10) Cascade
  • Tlr10
Rattus norvegicus (Norway rat)
Toll Like Receptor 4 (TLR4) Cascade
  • Bpi
  • Cd14
  • Cd180
  • Dnm
  • Dnm1
  • Dnm2
  • Dnm3
  • Dyn2
  • Dyn3
  • Lbp
  • Ly86
  • Ly96
  • Plcg2
  • Ptpn4
  • Ticam2
  • Tlr4
Rattus norvegicus (Norway rat)
Toll Like Receptor 7/8 (TLR7/8) Cascade
  • Tlr7
Rattus norvegicus (Norway rat)
Toll Like Receptor 9 (TLR9) Cascade
  • Eea1
  • Pik3c3
  • Pik3r4
  • Rbsn
  • Tlr9
  • Vps34
  • Zfyve20
Rattus norvegicus (Norway rat)
Trafficking and processing of endosomal TLR
  • Cnpy3
  • Cts7l2
  • Ctsb
  • Ctsk
  • Ctsl
  • Ctsl1
  • Ctsll3
  • Ctss
  • Grp94
  • Hsp90b1
  • Hspc4
  • Lgmn
  • Prsc1
  • RGD1308751
  • Tlr7
  • Tlr8
  • Tlr9
  • Tra1
  • Unc93b1
Rattus norvegicus (Norway rat)
Trafficking of AMPA receptors
  • Akap150
  • Akap5
  • Cacng2
  • Cacng3
  • Cacng4
  • Cacng8
  • Camk2a
  • Camk2b
  • Camk2d
  • Camk2g
  • Dlg1
  • Dlg4
  • Dlgh1
  • Dlgh4
  • Epb4.1l1
  • Epb41l1
  • GluA1
  • GluA3
  • Glur1
  • Glur3
  • Glur4
  • Gria1
  • Gria3
  • Gria4
  • Mdm2
  • Myo6
  • Psd95
  • Stg
Rattus norvegicus (Norway rat)
Trafficking of GluR2-containing AMPA receptors
  • Adtab
  • Ap17
  • Ap2a1
  • Ap2a2
  • Ap2b1
  • Ap2m1
  • Ap2s1
  • Clapb1
  • Claps2
  • Erg1
  • GluA1
  • GluA2
  • GluA3
  • Glur1
  • Glur2
  • Glur3
  • Glur4
  • Gria1
  • Gria2
  • Gria3
  • Gria4
  • Grip1
  • Grip2
  • Nsf
  • Pick1
  • Pkca
  • Pkcb
  • Pkcc
  • Pkcg
  • Prkca
  • Prkcabp
  • Prkcb
  • Prkcb1
  • Prkcc
  • Prkcg
  • Tspan7
Rattus norvegicus (Norway rat)
Transcriptional activation of mitochondrial biogenesis
  • AC128290.1
  • Acss2
  • Cycs
  • Cycsl2
  • Cycsl3
  • Gabpa
  • Gabpb1
  • Glud
  • Glud1
  • Idh2
  • LOC690675
  • RGD1562558
  • SIRT4
  • Sirt3
  • Sirt4
  • Sirt5
  • Sod2
Rattus norvegicus (Norway rat)
Transcriptional and post-translational regulation of MITF-M expression and activity
  • Aimp1
  • Aimp2
  • Cbp
  • Crebbp
  • Crm1
  • Dars
  • Dars1
  • Drs1
  • Eef1e1
  • Eprs
  • Eprs1
  • Erk1
  • Erk2
  • Gsk3b
  • Hint
  • Hint1
  • Iars1
  • Jtv1
  • KIT
  • Kars
  • Kars1
  • Kit
  • Kitl
  • Kitlg
  • Lars
  • Lars1
  • Mapk
  • Mapk1
  • Mapk3
  • Mapkapk1a
  • Mars1
  • Mgf
  • Mitf
  • Pkci1
  • Prkm1
  • Prkm3
  • Qars
  • Qars1
  • Rars
  • Rars1
  • Rps6ka1
  • Rsk1
  • Wnt3a
  • Xpo1
Rattus norvegicus (Norway rat)
Transcriptional regulation by small RNAs
  • AC109542.1
  • Aaas
  • Ago1
  • Ago2
  • ENSRNOG00000062927
  • ENSRNOG00000064540
  • ENSRNOG00000066901
  • ENSRNOG00000068034
  • Eif2c2
  • Gp210
  • H2ab3
  • H2ac10
  • H2ac18
  • H2ac4
  • H2afb3
  • H2afx
  • H2aj
  • H2ax
  • H2az2
  • H2bc1
  • H2bc12l1
  • H2bc6
  • H2bcl1
  • H2bcl2
  • H2bu1
  • H3-3b
  • H3.3b
  • H3c13
  • H3f3b
  • H4c16
  • H4c2
  • H4f16
  • H4ft
  • Hist1h2ba
  • Hist1h2bc
  • Hist1h2bg
  • Hist1h2bo
  • Hist1h2bq
  • Hist1h4b
  • Hist1h4m
  • Hist2h2aa3
  • Hist2h3c2
  • Hist4
  • Hist4h4
  • Ipo8
  • LOC100365043
  • LOC100910200
  • LOC120097726
  • LOC120098305
  • LOC683983
  • LOC684797
  • Mrnp41
  • Ndc1
  • Npap60
  • Nup107
  • Nup121
  • Nup133
  • Nup153
  • Nup155
  • Nup160
  • Nup188
  • Nup205
  • Nup210
  • Nup214
  • Nup35
  • Nup37
  • Nup42
  • Nup43
  • Nup50
  • Nup53
  • Nup54
  • Nup58
  • Nup62
  • Nup84
  • Nup85
  • Nup88
  • Nup93
  • Nup98
  • Nupl1
  • Nupl2
  • Pcnt1
  • Polr2a
  • Polr2b
  • Polr2c
  • Polr2d
  • Polr2e
  • Polr2f
  • Polr2g
  • Polr2i
  • Polr2j
  • Pom121
  • Pom210
  • Rae1
  • Ran
  • Ranbp2
  • Sec13
  • Sec13l1
  • Th2b
  • Tmem48
  • Tnrc6a
  • Tpr
Rattus norvegicus (Norway rat)
Transcriptional regulation by the AP-2 (TFAP2) family of transcription factors
  • Dek
  • Tcfap2a
  • Tfap2a
Rattus norvegicus (Norway rat)
Transcriptional regulation of white adipocyte differentiation
  • Hdac3
  • Ncor2
  • Nr1c3
  • Nr2b1
  • Pparg
  • Rxra
Rattus norvegicus (Norway rat)
Transfer of LPS from LBP carrier to CD14
  • Cd14
  • Lbp
Rattus norvegicus (Norway rat)

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Supported by JST NBDC Grant Number JPMJND2204

Partly supported by NIH Common Fund Grant #1U01GM125267-01


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