GlyCosmos Pathways

Integrated of pathway data, containing glycoproteins and glycans obtained from Reactome and the Metabolism of carbohydrates in Escherichia coli O-antigens obtained from ECODAB. Search by pathway name, species, and protein name.

Source Last Updated
Reactome March 20, 2024
ECODAB April 1, 2019
Displaying entries 126 - 150 of 1070 in total
Pathway Name ▼ Protein Name UniProt ID Gene Symbol Organism GlyTouCan ID
TFAP2 (AP-2) family regulates transcription of cell cycle factors
  • Kdm5b
  • Myc
  • Tfap2c
Rattus norvegicus (Norway rat)
TCF dependent signaling in response to WNT
  • Axin
  • Axin1
  • Axin2
  • Catnb
  • Ctnnb1
  • LOC100360645
  • Rnf146
  • Rps27a
  • Ryk
  • Tnks
  • Tnks2
  • Uba80
  • Ubb
  • Ubbl1
  • Ubc
  • Ubcep1
  • Ubcl1
  • Usp34
  • Wnt-5a
  • Wnt1
  • Wnt3
  • Wnt3a
  • Wnt5a
Rattus norvegicus (Norway rat)
TAK1-dependent IKK and NF-kappa-B activation
  • A4
  • AD1
  • Ager
  • App
  • Chuk
  • Hmg-1
  • Hmg1
  • Hmgb1
  • Hmgb1-ps33
  • Hmgb1-ps4
  • Hmgb1l1
  • Hmgb1l2
  • Hmgb1l3
  • Hmgb1l5
  • Ikba
  • Ikbb
  • Ikbkb
  • Ikbkg
  • Ikkb
  • LOC108349189
  • LOC108350839
  • Nemo
  • Nfkb2
  • Nfkbia
  • Nfkbib
  • Nkiras1
  • Nkiras2
  • Rage
  • Rela
  • S100b
Rattus norvegicus (Norway rat)
Synthesis, secretion, and inactivation of Glucose-dependent Insulinotropic Polypeptide (GIP)
  • Cd26
  • Dpp4
  • Ffar1
  • Gip
  • Gpr119
  • Gpr40
Rattus norvegicus (Norway rat)
Synthesis, secretion, and inactivation of Glucagon-like Peptide-1 (GLP-1)
  • Cd26
  • Dpp4
  • Ffar1
  • Ffar4
  • Gcg
  • Gpr119
  • Gpr120
  • Gpr40
  • Grp
  • Lep
  • O3far1
  • Ob
Rattus norvegicus (Norway rat)
Synthesis, secretion, and deacylation of Ghrelin
  • Bche
  • Bdp
  • Gcg
  • Gh
  • Gh1
  • Ghrl
  • Goat
  • Igf-1
  • Igf1
  • Ins-1
  • Ins1
  • Lep
  • Mboat4
  • Nec-1
  • Nec1
  • Ob
  • Pcsk1
  • Sec11a
  • Sec11c
  • Sec11l1
  • Sec11l3
  • Spc18
  • Spc21
  • Spcs1
  • Spcs2
  • Spcs3
Rattus norvegicus (Norway rat)
Synthesis of very long-chain fatty acyl-CoAs
  • Acs1
  • Acs2
  • Acs3
  • Acs4
  • Acs5
  • Acsbg1
  • Acsbg2
  • Acsf3
  • Acsl1
  • Acsl2
  • Acsl3
  • Acsl4
  • Acsl5
  • Acsl6
  • ELOVL1
  • ELOVL3
  • Edh17b3
  • Elovl1
  • Elovl2
  • Elovl3
  • Elovl5
  • Elovl6
  • Elovl7
  • Face
  • Facl2
  • Facl3
  • Facl4
  • Facl5
  • Facl6
  • Gpsn2
  • Grlacs
  • Hacd1
  • Hacd3
  • Hacd4
  • Hsd17b12
  • Hsd17b3
  • LOC100365676
  • Lce
  • Ssc2
  • Tecr
  • Tecrl
Rattus norvegicus (Norway rat)
Synthesis of glycosylphosphatidylinositol (GPI)
  • Dpm2
  • Piga
  • Pigb
  • Pigc
  • Pigf
  • Pigg
  • Pigh
  • Pigl
  • Pigm
  • Pign
  • Pigp
  • Pigq
  • Pigv
  • Pigw
  • Pigx
Rattus norvegicus (Norway rat)
Synthesis of epoxy (EET) and dihydroxyeicosatrienoic acids (DHET)
  • Cyp1a-1
  • Cyp1a-2
  • Cyp1a1
  • Cyp1a2
  • Cyp1b1
  • Cyp2c66
  • Cyp2j16
  • Cyp2j3
  • Cyp2j9
  • Ephx2
  • LOC100912265
Rattus norvegicus (Norway rat)
Synthesis of diphthamide-EEF2
  • Atpbd4
  • Dph5
  • Dph6
  • Eef2
Rattus norvegicus (Norway rat)
Synthesis of bile acids and bile salts via 7alpha-hydroxycholesterol
  • Abcb11
  • Acot8
  • Acox2
  • Acsb
  • Acsvl1
  • Akr1c1
  • Akr1c21
  • Akr1d1
  • Amacr
  • Baat
  • Bar
  • Bsep
  • Cca2
  • Cyp27
  • Cyp27a1
  • Cyp7
  • Cyp7a1
  • Cyp7b1
  • Cyp8
  • Cyp8b1
  • Edh17b4
  • Facvl1
  • Fatp2
  • Fatp5
  • Fxr
  • Hsd17b4
  • Hsd17b5
  • Hsd3b7
  • Ncoa1
  • Ncoa2
  • Nr1h4
  • Nr2b1
  • Pte1
  • Ptgis
  • Rip14
  • Rxra
  • Scp-2
  • Scp2
  • Slc27a2
  • Slc27a5
  • Spgp
  • Thcox
  • Tif2
  • Vlacs
  • Vlacsr
  • Vlcs
Rattus norvegicus (Norway rat)
Synthesis of bile acids and bile salts via 27-hydroxycholesterol
  • Akr1c1
  • Akr1c21
  • Akr1d1
  • Bar
  • Cca2
  • Cyp27
  • Cyp27a1
  • Cyp7
  • Cyp7a1
  • Cyp7b1
  • Cyp8
  • Cyp8b1
  • Fxr
  • Hsd17b5
  • Hsd3b7
  • Ncoa1
  • Ncoa2
  • Nr1h4
  • Nr2b1
  • Ptgis
  • Rip14
  • Rxra
  • Tif2
Rattus norvegicus (Norway rat)
Synthesis of bile acids and bile salts
  • Bar
  • Ch25h
  • Cyp7
  • Cyp7a1
  • Cyp7b1
  • Fxr
  • Ncoa1
  • Ncoa2
  • Nr1h4
  • Nr2b1
  • Orp1
  • Osbp
  • Osbpl1a
  • Osbpl2
  • Osbpl3
  • Osbpl6
  • Osbpl7
  • Osbpl9
  • Rip14
  • Rxra
  • Tif2
Rattus norvegicus (Norway rat)
Synthesis of active ubiquitin: roles of E1 and E2 enzymes
  • AABR07041109.1
  • Cdc34
  • Fam105b
  • Hausp
  • LOC100360645
  • LOC100362554
  • LOC100366017
  • LOC64038
  • NEWGENE_1308361
  • Otulin
  • Rad6b
  • Rps27a
  • Uba1
  • Uba6
  • Uba80
  • Ubb
  • Ubbl1
  • Ubc
  • Ubc4
  • Ubc7
  • Ubcep1
  • Ubch4
  • Ubch5b
  • Ubcl1
  • Ube1
  • Ube2a
  • Ube2b
  • Ube2c
  • Ube2d1
  • Ube2d2
  • Ube2e1
  • Ube2e3
  • Ube2g
  • Ube2g1
  • Ube2g2
  • Ube2h
  • Ube2k
  • Ube2l3
  • Ube2q2
  • Ube2r2
  • Ube2s
  • Ube2t
  • Ube2w
  • Ube2z
  • Uchl3
  • Usp5
  • Usp7
Rattus norvegicus (Norway rat)
Synthesis of UDP-N-acetyl-glucosamine
  • Amdhd2
  • Gfpt1
  • Gfpt2
  • Nagk
  • Pgm3
  • Renbp
  • Uap1
Rattus norvegicus (Norway rat)
Synthesis of Prostaglandins (PG) and Thromboxanes (TX)
  • Akr1c1
  • Akr1c21
  • Cbr
  • Cbr1
  • Cox-1
  • Cox-2
  • Cox1
  • Cox2
  • Cyp5
  • Cyp5a1
  • Cyp8
  • Cyp8b1
  • Gsts
  • Hpgds
  • Hsd17b5
  • Pgds
  • Pges
  • Pig12
  • Ptgds
  • Ptgds2
  • Ptges
  • Ptges2
  • Ptges3
  • Ptgis
  • Ptgs1
  • Ptgs2
  • Tbxas1
  • Tebp
Rattus norvegicus (Norway rat)
Synthesis of PS
  • Ptdss1
  • Ptdss2
Rattus norvegicus (Norway rat)
Synthesis of PIPs at the plasma membrane
  • Arf1
  • Bmx
  • Fapp2
  • Inpp4a
  • Inpp4b
  • Inpp5d
  • Inpp5j
  • Inpp5k
  • Inppl1
  • Mtm1
  • Mtmr1
  • Mtmr14
  • Mtmr3
  • Mtmr6
  • Ocrl
  • Pepp1
  • Pi4k2a
  • Pi4k2b
  • Pi4kii
  • Pib5pa
  • Pik3c2a
  • Pik3c2b
  • Pik3c2g
  • Pik3ca
  • Pik3cb
  • Pik3cd
  • Pik3cg
  • Pik3r1
  • Pik3r2
  • Pik3r3
  • Pik3r5
  • Pik3r6
  • Pip4k2a
  • Pip4k2b
  • Pip4k2c
  • Pip4ka
  • Pip5k1a
  • Pip5k1b
  • Pip5k1c
  • Pip5k2a
  • Pip5k2b
  • Pip5k2c
  • Pipp
  • Plekha1
  • Plekha2
  • Plekha3
  • Plekha4
  • Plekha5
  • Plekha6
  • Plekha8
  • Pten
  • Ptpn13
  • Rab14
  • Rab4
  • Rab4a
  • Rab5a
  • Rufy1
  • Ship
  • Ship1
  • Ship2
  • Synj1
  • Synj2
Rattus norvegicus (Norway rat)
Synthesis of PIPs at the early endosome membrane
  • Inpp4a
  • Inpp4b
  • Inpp5f
  • Mtm1
  • Mtmr12
  • Mtmr2
  • Mtmr4
  • Pi4k2a
  • Pi4k2b
  • Pi4kii
  • Pik3c2a
  • Pik3c3
  • Pik3r4
  • Pikfyve
  • Pip3ap
  • Vac14
  • Vps34
Rattus norvegicus (Norway rat)
Synthesis of PIPs at the Golgi membrane
  • Arf1
  • Arf3
  • Inpp5e
  • Ocrl
  • Pi4k2a
  • Pi4k2b
  • Pi4ka
  • Pi4kb
  • Pi4kii
  • Pik3c2a
  • Pik3c2g
  • Pik3c3
  • Pik3r4
  • Pik4ca
  • Pik4cb
  • Pikfyve
  • Sac1
  • Sacm1l
  • Tpte
  • Tpte2
  • Vac14
  • Vps34
Rattus norvegicus (Norway rat)
Synthesis of PI
  • Cdipt
  • Cds
  • Cds1
  • Nir2
  • Pis1
  • Pitpnm
  • Pitpnm1
  • Pitpnm2
  • Pitpnm3
Rattus norvegicus (Norway rat)
Synthesis of PE
  • Cept1
  • Chetk
  • Chk
  • Chka
  • Chkb
  • Chkl
  • Ckr
  • Ept1
  • Etnk1
  • Etnk2
  • Etnppl
  • LOC687071
  • Lpin1
  • Lpin2
  • Lpin3
  • Pcyt2
  • Phospho1
  • Selenoi
Rattus norvegicus (Norway rat)
Synthesis of PC
  • Abhd3
  • Aytl2
  • Cctb
  • Cd92
  • Cdw92
  • Cept1
  • Chat
  • Chetk
  • Chk
  • Chka
  • Chkb
  • Chkl
  • Chpt1
  • Ck2n
  • Ckr
  • Cpt1
  • Csnk2a1
  • Csnk2a2
  • Csnk2b
  • Ctl1
  • Ctl2
  • Ctl3
  • Ctl4
  • Ctpct
  • Lpcat1
  • Lpin1
  • Lpin2
  • Lpin3
  • Mfsd2a
  • Ng22
  • Pctp
  • Pcyt1
  • Pcyt1a
  • Pcyt1b
  • Pempt
  • Pemt
  • Phospho1
  • Slc44a1
  • Slc44a2
  • Slc44a3
  • Slc44a4
  • Slc44a5
  • Stard10
  • Stard2
  • Stard7
  • TPPT1
Rattus norvegicus (Norway rat)
Synthesis of PA
  • Acp6
  • Agpat1
  • Agpat2
  • Agpat3
  • Agpat4
  • Agpat5
  • Agpat6
  • Agpat9
  • Alpi
  • Aytl2
  • Cpla2
  • Ddhd1
  • Ddhd2
  • Gnpat
  • Gpam
  • Gpat1
  • Gpat2
  • Gpat3
  • Gpat4
  • Gpd1
  • Gpd1l
  • Gpd1l1
  • Gpd2
  • Lclat1
  • Liph
  • Lipi
  • Lpcat1
  • Lpcat4
  • Miga1
  • Miga2
  • Pla2g10
  • Pla2g12a
  • Pla2g1b
  • Pla2g2a
  • Pla2g2d
  • Pla2g2f
  • Pla2g4
  • Pla2g4a
  • Pla2g4b
  • Pla2g4d
  • Pla2g5
  • Pla2r1
  • Pld1
  • Pld2
  • Pld6
  • ddhd2
Rattus norvegicus (Norway rat)
Synthesis of Leukotrienes (LT) and Eoxins (EX)
  • Abcc1
  • Alox12l
  • Alox15
  • Alox5
  • Alox5ap
  • Cyp4a-1
  • Cyp4a-2
  • Cyp4a-3
  • Cyp4a-8
  • Cyp4a1
  • Cyp4a10
  • Cyp4a11
  • Cyp4a12
  • Cyp4a14
  • Cyp4a2
  • Cyp4a3
  • Cyp4a8
  • Cyp4b-1
  • Cyp4b1
  • Cyp4f-1
  • Cyp4f1
  • Cyp4f18
  • Cyp4f2
  • Cyp4f3
  • Cyp4f4
  • Cyp4f40
  • Dpep1
  • Dpep2
  • Dpep3
  • Flap
  • Ggt
  • Ggt1
  • Ggt5
  • Ggtla1
  • Lta4h
  • Ltc4s
  • Mapkapk2
  • Mrp1
  • Rdp
Rattus norvegicus (Norway rat)

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GlyCosmos is a member of the GlySpace Alliance together with GlyGen and Glycomics@ExPASy.

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Supported by JST NBDC Grant Number JPMJND2204

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Last updated: August 19, 2024