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Glycan Structure Repository
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Repository for lectin-assisted multimodality data
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Genes / Proteins / Lipids Glycans / Glycoconjugates Glycomes Pathways / Interactions / Diseases / Organisms
G56682BC
Summary
- GlyTouCan ID
-
G56682BC
- IUPAC Condensed
- Gal(b1-3)[Neu5Ac(a2-6)]GalNAc(a1-
- Motifs
- O-Glycan core 1 Sialyl Tn antigen T antigen TF antigen
- Subsumption Level
- Fully-defined saccharide
- Monoisotopic Mass
- 674.24
External Links
- GlyConnect structure
- GlyGen
- GlycoChemExplorer
- JCGGDB AIST
- UniCarbKB
- UniCarb-DB
- ChEBI
- PubChem Compound
- PubChem Substance
3D Structures
Organisms
| Organisms | Evidence |
|---|---|
| Danio rerio (zebrafish) | |
| Mus musculus (house mouse) | |
| Sus scrofa (pig) | |
| Homo sapiens (human) | |
| synthetic construct |
Taxonomic Hierarchy
root
cellular organisms [inference]
GlycoGene Database (GGDB)
| Gene Symbol | Donor | Acceptor | Reducing terminal(Acceptor) | Product | Reducing terminal(Product) | Reference |
|---|---|---|---|---|---|---|
| ST6GALNAC1 | CMP-Neu5Ac |
G00031MO
|
Ser/Thr |
G56682BC
|
Ser/Thr | |
| ST6GALNAC2 | CMP-Neu5Ac |
G00031MO
|
Ser/Thr |
G56682BC
|
Ser/Thr |
| Gene Symbol | Donor | Acceptor | Reducing terminal(Acceptor) | Product | Reducing terminal(Product) | Reference |
|---|---|---|---|---|---|---|
| ST6GALNAC1 | CMP-Neu5Ac |
G00031MO
|
Ser/Thr |
G56682BC
|
Ser/Thr | |
| ST6GALNAC1 | CMP-Neu5Ac |
G00031MO
|
O-glycan Synthesis |
G56682BC
|
O-glycan Synthesis | |
| ST6GALNAC2 | CMP-Neu5Ac |
G00031MO
|
Ser/Thr |
G56682BC
|
Ser/Thr | |
| FUT2 | GDP-Fuc |
G56682BC
|
O-glycan Synthesis |
G47180UC
|
O-glycan Synthesis |
Core Protein
| UniProt ID | Protein Name | Reference | Source |
|---|---|---|---|
| P00743 | Coagulation factor X | ||
| P01215 | Glycoprotein hormones alpha chain | ||
| P01375 | Tumor necrosis factor | ||
| P01563 | Interferon alpha-2 | ||
| P01588 | Erythropoietin | ||
| P01824 | Immunoglobulin heavy variable 4-39 | ||
| P01876 | Immunoglobulin heavy constant alpha 1 | ||
| P01880 | Immunoglobulin heavy constant delta | ||
| P02668 | Kappa-casein | ||
| P02724 | Glycophorin-A |
GlycomeAtlas
Tissues in which this glycan is expressed are highlighted in yellow.
- Danio rerio
Literature
- Tissue
-
- brain
- gill
- heart
- intestine
- liver
- skin gland
- testis
- Reference
- Yamakawa N et al. Systems glycomics of adult zebrafish identifies organ-specific sialylation and glycosylation patterns. Nat Commun. 2018;9(1):4647. Published 2018 Nov 7. doi:10.1038/s41467-018-06950-3
- DOI
- 10.1038/s41467-018-06950-3
Localization sites organized by hierarchy by Uber-anatomy ontology (UBERON)
Sequence Descriptors
- GlycoCT
-
RES 1b:a-dgal-HEX-1:5 2s:n-acetyl 3b:b-dgal-HEX-1:5 4b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d 5s:n-acetyl LIN 1:1d(2+1)2n 2:1o(3+1)3d 3:1o(6+2)4d 4:4d(5+1)5n
- WURCS
- WURCS=2.0/3,3,2/[a2112h-1a_1-5_2*NCC/3=O][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O]/1-2-3/a3-b1_a6-c2
