PACDB provides the information on pathogens (e.g. bacteria, fungus, toxin and virus) adhering to carbohydrates expressed on the cell surface of host animals or plants.
Database | Last Updated |
---|---|
Pathogen Adherence to Carbohydrate Database (PACDB) | June 1, 2016 |
Species ▲ | Pathogen Adherence Molecule | Ligand Name | Ligand Feature | Target Source | Glycan Sequence | Binding | PubMed ID |
---|---|---|---|---|---|---|---|
LPS
|
Sulfatide (CSE)
|
Sulfoglycosphingolipids
|
HSO3(-3)Gal(b1-1)Cer
|
Binding
|
|||
LPS
|
Asialo-GM2 (Gangliotriosylceramide; GgO3)
|
Oligoglycosylceramides
|
GalNAc(b1-4)Gal(b1-4)Glc(b1-1)Cer
|
Binding
|
|||
LPS
|
Glucosylceramide
|
Monoglycosylceramides
|
Glc(b1-1)Cer
|
Binding
|
|||
LPS
|
Galactosylceramide (hydroxylated/nonhydroxylated fatty acids)
|
Monoglycosylceramides
|
Gal(b1-1)Cer
|
Binding
|
|||
LPS
|
Lactosylceramide (Lactocerebroside)
|
Diosylceramides
|
Gal(b1-4)Glc(b1-1)Cer
|
Binding
|
|||
LPS
|
Asialo GM1 (Gangliotetraosylceramide; Gg4; GA1)
|
Oligoglycosylceramides
|
Gal(b1-3)GalNAc(b1-4)Gal(b1-4)Glc(b1-1)Cer
|
Binding
|
|||
Unknown
|
GD1b
|
Disialoglycosphingolipids
|
Human brain
|
Gal(b1-3)GalNAc(b1-4)[NeuAc(a2-8)NeuAc(a2-3)]Gal(b1-4)Glc(b1-1)Cer
|
Binding
|
||
Unknown
|
GM1
|
Monosialoglycosphingolipids
|
Human brain
|
Gal(b1-3)GalNAc(b1-4)[NeuAc(a2-3)]Gal(b1-4)Glc(b1-1)Cer
|
Binding
|
||
Type-2 fimbrial lectins (130-kDa glycoprotein)
|
N-Acetylgalactosamine
|
Monosaccharides
|
Polymorphonuclear leukocytes (PMNs)
|
GalNAc
|
Binding
|
||
Type-2 fimbrial lectins (130-kDa glycoprotein)
|
Galactose
|
Monosaccharides
|
Polymorphonuclear leukocytes (PMNs)
|
Gal
|
Binding
|
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Supported by JST NBDC Grant Number JPMJND2204
Partly supported by NIH Common Fund Grant #1U01GM125267-01