GlyCosmos Portal

GlyCosmos Pathways

Integrated of pathway data, containing glycoproteins and glycans obtained from Reactome and the Metabolism of carbohydrates in Escherichia coli O-antigens obtained from ECODAB. Search by pathway name, species, and protein name.

Source	Last Updated
Reactome	March 20, 2024
ECODAB	April 1, 2019

Displaying entries **101 - 125** of **1070** in total

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Pathway Name ▲	Protein Name	UniProt ID	Gene Symbol	Organism
Axonal growth inhibition (RHOA activation)	Leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein 1 MCF.2 cell line derived transforming sequence Myelin-associated glycoprotein Oligodendrocyte-myelin glycoprotein Reticulon-4 Rho GDP-dissociation inhibitor 1 Transforming protein RhoA Tumor necrosis factor receptor superfamily member 16	A0A8I6A9Q4 F7EYB9 G3V881 P07174 P07722 P61589 Q5XI73 Q9JK11	Arha Arha2 Arhgdia Lingo1 Mag Mcf2 Ngfr Nogo Omg Rhoa Rtn4 Tnfrsf16	Rattus norvegicus (Norway rat)
Axonal growth stimulation	Beta-nerve growth factor Rho GDP-dissociation inhibitor 1 Transforming protein RhoA Tumor necrosis factor receptor superfamily member 16	P07174 P25427 P61589 Q5XI73	Arha Arha2 Arhgdia Ngf Ngfb Ngfr Rhoa Tnfrsf16	Rattus norvegicus (Norway rat)
Azathioprine ADME	ATP-binding cassette sub-family C member 5 ATP-binding cassette subfamily C member 4 Equilibrative nucleoside transporter 1 Equilibrative nucleoside transporter 2 GMP synthase [glutamine-hydrolyzing] Glutathione S-transferase A6 Glutathione S-transferase Mu 2 Glutathione S-transferase alpha-1 Glutathione S-transferase alpha-2 Glutathione S-transferase alpha-3 Glutathione S-transferase alpha-5 Hypoxanthine-guanine phosphoribosyltransferase Inosine-5'-monophosphate dehydrogenase 1 Inosine-5'-monophosphate dehydrogenase 2 Nucleoside diphosphate kinase A Nucleoside diphosphate kinase B Nudix hydrolase 15 Proto-oncogene vav Ras-related C3 botulinum toxin substrate 1 Sodium/nucleoside cotransporter 2 Solute carrier family 28 member 3 Thiopurine S-methyltransferase Vav guanine nucleotide exchange factor 2 Vav guanine nucleotide exchange factor 3 Xanthine dehydrogenase/oxidase guanylate kinase	A0A8I5ZPB5 A0A8I6A2B3 D3ZKQ0 D3ZLZ7 D3ZYG0 E9PU28 F1M3J4 O54698 O54699 P00502 P04903 P04904 P08010 P19804 P22985 P27605 P46418 P54100 Q05982 Q4V7C6 Q62773 Q6AXY0 Q6RUV5 Q8VIH3 Q9QYM0 Q9Z0T0	Abcc4 Abcc5 Cnt2 Cnt3 Ent1 Ent2 Gmps Gsta1 Gsta2 Gsta3 Gsta5 Gsta6 Gstm2 Gstyc1 Gstyc2 Guk1 Hprt Hprt1 Impdh1 Impdh2 Mrp4 Mrp5 Nme1 Nme2 Nudt15 Rac Rac1 Slc28a2 Slc28a3 Slc29a1 Slc29a2 Spnt Tpmt Vav Vav1 Vav2 Vav3 Xdh	Rattus norvegicus (Norway rat)
B-WICH complex positively regulates rRNA expression	Actin, cytoplasmic 1 Bromodomain adjacent to zinc finger domain, 1B DNA-directed RNA polymerase I subunit RPA12 DNA-directed RNA polymerase I subunit RPA1 DNA-directed RNA polymerase I subunit RPA2 DNA-directed RNA polymerase subunit DNA-directed RNA polymerases I, II, and III subunit RPABC1 DNA-directed RNA polymerases I, II, and III subunit RPABC2 DNA-directed RNA polymerases I, II, and III subunit RPABC3 DNA-directed RNA polymerases I, II, and III subunit RPABC5 ERCC excision repair 6, chromatin remodeling factor Glycogen synthase kinase-3 beta Histone H2A type 2-A Histone H2A.J Histone H2A Histone H2A Histone H2A Histone H2A Histone H2A Histone H2A Histone H2B type 1-A Histone H2B Histone H2B Histone H2B Histone H2B Histone H2B Histone H2B Histone H2B Histone H3.1 Histone H3.3 Histone H3 Histone H4 Histone acetyltransferase Histone acetyltransferase Myb-binding protein 1A Nucleolar RNA helicase 2 Protein DEK RNA polymerase I subunit E RNA polymerase I subunit G SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 Splicing factor 3b, subunit 1 TATA box-binding protein-associated factor RNA polymerase I subunit A TATA box-binding protein-associated factor RNA polymerase I subunit B TATA box-binding protein-associated factor RNA polymerase I subunit D TATA box-binding protein-associated factor, RNA polymerase I, subunit C TATA-box-binding protein Unconventional myosin-Ic histone acetyltransferase	A0A0G2JTU1 A0A0G2JXI9 A0A8I5Y222 A0A8I5ZQQ5 A0A8I5ZSA8 A0A8I5ZYY0 A0A8I6A2W1 A0A8I6A7P3 A0A8I6A9T0 A0A8I6AFW8 A0A8I6ALC2 A0A8I6AWT3 A0A8I6AXL7 A0A8I6G641 A0A8I6G659 A9UMV8 B0BN64 B0BNE2 D3ZJ08 D3ZVK7 D3ZXP3 D3ZYB7 D4ACM0 D4ACX5 D4ADE7 D4ADH7 G3V7T6 G3V9C7 M0RBH0 M0RBQ5 O35821 O54888 O54889 O88828 P0CC09 P18266 P60711 P62804 P84245 Q00729 Q3B7U2 Q3B8Q1 Q5M948 Q63355 Q6AXS3 Q6LED0 Q6MFY5 Q6P773	AC109542.1 Actb Baz1b Cd3eap Ddx21 Ddx21a Dek ENSRNOG00000062927 ENSRNOG00000064540 ENSRNOG00000066901 ENSRNOG00000068034 Ep300 Ercc6 Gsk3b H2ab3 H2ac10 H2ac18 H2ac4 H2afb3 H2afx H2aj H2ax H2az2 H2bc1 H2bc12l1 H2bc6 H2bcl1 H2bcl2 H2bu1 H3-3b H3.3b H3c13 H3f3b H4c16 H4c2 H4f16 H4ft Hist1h2ba Hist1h2bc Hist1h2bg Hist1h2bo Hist1h2bq Hist1h4b Hist1h4m Hist2h2aa3 Hist2h3c2 Hist4 Hist4h4 Josd3 Kat2a Kat2b LOC100365043 LOC100910200 LOC120097726 LOC120098305 LOC684797 Mybbp1a Myo1c Myr2 Polr1a Polr1b Polr1e Polr1f Polr1g Polr1h Polr2e Polr2f Rpa1 Rpa2 Rpo1-2 Rpo1-4 Sf3b1 Smarca5 Taf1a Taf1b Taf1c Taf1d Tbp Th2b Twistnb Znrd1	Rattus norvegicus (Norway rat)
BBSome-mediated cargo-targeting to cilium	ADP-ribosylation factor-like protein 6 Bardet-Biedl syndrome 1 Bardet-Biedl syndrome 2 protein homolog Bardet-Biedl syndrome 4 Bardet-Biedl syndrome 7 protein homolog Bardet-Biedl syndrome 9 Leucine zipper transcription factor-like protein 1 Melanin-concentrating hormone receptor 1 Protein smoothened Rab-3A-interacting protein Somatostatin receptor type 3 Tetratricopeptide repeat domain 8	A0A1P8YVD0 A0A8I6AHB5 A0A8I6GF94 D4A4U2 F1M285 P30936 P97639 P97698 Q562C6 Q62739 Q66H90 Q99MH9	Arl6 Bbs1 Bbs2 Bbs4 Bbs7 Bbs9 Gpr24 Lztfl1 Mchr1 Rab3ip Rabin3 Rabin8 Slc1 Smo Smoh Sstr3 Ttc8	Rattus norvegicus (Norway rat)
BH3-only proteins associate with and inactivate anti-apoptotic BCL-2 members	BH3-interacting domain death agonist Bcl-2-like protein 11 Bcl-2-like protein 1 Bcl2-associated agonist of cell death Phorbol-12-myristate-13-acetate-induced protein 1	O35147 O88498 P53563 Q5U777 Q9JLT6	Bad Bcl2l1 Bcl2l11 Bclx Bid Bim Blc2l Bod Noxa Pmaip1	Rattus norvegicus (Norway rat)
Basigin interactions	Amino acid transporter heavy chain SLC3A2 Asc-type amino acid transporter 1 Basigin Caveolin-1 Integrin alpha 3 variant B Integrin beta-1 Integrin subunit alpha 6 Large neutral amino acids transporter small subunit 1 Large neutral amino acids transporter small subunit 2 Leukosialin (Fragment) Monocarboxylate transporter 1 Monocarboxylate transporter 3 Monocarboxylate transporter 4 Myelin-associated glycoprotein Neural cell adhesion molecule L1 Peptidyl-prolyl cis-trans isomerase A RING-type E3 ubiquitin transferase Sodium/potassium-transporting ATPase subunit beta-1 Sodium/potassium-transporting ATPase subunit beta-2 Sodium/potassium-transporting ATPase subunit beta-3 Solute carrier family 7 member 11 Y+L amino acid transporter 1 Y+L amino acid transporter 2 b(0,+)-type amino acid transporter 1 interstitial collagenase	A0A8I5ZKR1 A0A8I6AB70 A0A8I6AJE9 B5DFD5 F7FHL6 I4DUB5 O35910 O70461 P07340 P07722 P10111 P13638 P13838 P26453 P41350 P49134 P53987 P63116 P82252 Q05695 Q63016 Q63377 Q794F9 Q9R0S5 Q9WVR6	Asc1 Atp1b1 Atp1b2 Atp1b3 Bat1 Bsg Caml1 Cav Cav1 ITGA3B Itga3 Itga6 Itgb1 L1cam Lat1 Lat2 Lat4 Mag Mct1 Mct3 Mct4 Mmp1 Mmp1a Mpe16 Ppia Ppil2 Slc16a1 Slc16a3 Slc16a8 Slc3a2 Slc7a10 Slc7a11 Slc7a5 Slc7a6 Slc7a7 Slc7a8 Slc7a9 Spn Ta1	Rattus norvegicus (Norway rat)
Beta oxidation of butanoyl-CoA to acetyl-CoA	Enoyl-CoA hydratase, mitochondrial Hydroxyacyl-coenzyme A dehydrogenase, mitochondrial Short-chain specific acyl-CoA dehydrogenase, mitochondrial	P14604 P15651 Q9WVK7	Acads Echs1 Had Hadh Hadhsc Schad	Rattus norvegicus (Norway rat)
Beta oxidation of decanoyl-CoA to octanoyl-CoA-CoA	Enoyl-CoA hydratase, mitochondrial Enoyl-[acyl-carrier-protein] reductase, mitochondrial Hydroxyacyl-coenzyme A dehydrogenase, mitochondrial Medium-chain specific acyl-CoA dehydrogenase, mitochondrial Trifunctional enzyme subunit alpha, mitochondrial Trifunctional enzyme subunit beta, mitochondrial	P08503 P14604 Q60587 Q64428 Q9WVK7 Q9Z311	Acadm Echs1 Had Hadh Hadha Hadhb Hadhsc Mecr Nrbf1 Schad	Rattus norvegicus (Norway rat)
Beta oxidation of hexanoyl-CoA to butanoyl-CoA	Enoyl-CoA hydratase, mitochondrial Hydroxyacyl-coenzyme A dehydrogenase, mitochondrial Short-chain specific acyl-CoA dehydrogenase, mitochondrial Trifunctional enzyme subunit alpha, mitochondrial Trifunctional enzyme subunit beta, mitochondrial	P14604 P15651 Q60587 Q64428 Q9WVK7	Acads Echs1 Had Hadh Hadha Hadhb Hadhsc Schad	Rattus norvegicus (Norway rat)
Beta oxidation of lauroyl-CoA to decanoyl-CoA-CoA	Enoyl-CoA hydratase, mitochondrial Hydroxyacyl-coenzyme A dehydrogenase, mitochondrial Long-chain specific acyl-CoA dehydrogenase, mitochondrial Trifunctional enzyme subunit alpha, mitochondrial Trifunctional enzyme subunit beta, mitochondrial	P14604 P15650 Q60587 Q64428 Q9WVK7	Acadl Echs1 Had Hadh Hadha Hadhb Hadhsc Schad	Rattus norvegicus (Norway rat)
Beta oxidation of myristoyl-CoA to lauroyl-CoA	Long-chain specific acyl-CoA dehydrogenase, mitochondrial Trifunctional enzyme subunit alpha, mitochondrial Trifunctional enzyme subunit beta, mitochondrial	P15650 Q60587 Q64428	Acadl Hadha Hadhb	Rattus norvegicus (Norway rat)
Beta oxidation of octanoyl-CoA to hexanoyl-CoA	Enoyl-CoA hydratase, mitochondrial Hydroxyacyl-coenzyme A dehydrogenase, mitochondrial Medium-chain specific acyl-CoA dehydrogenase, mitochondrial Trifunctional enzyme subunit alpha, mitochondrial Trifunctional enzyme subunit beta, mitochondrial	P08503 P14604 Q60587 Q64428 Q9WVK7	Acadm Echs1 Had Hadh Hadha Hadhb Hadhsc Schad	Rattus norvegicus (Norway rat)
Beta oxidation of palmitoyl-CoA to myristoyl-CoA	Trifunctional enzyme subunit alpha, mitochondrial Trifunctional enzyme subunit beta, mitochondrial Very long-chain specific acyl-CoA dehydrogenase, mitochondrial	P45953 Q60587 Q64428	Acadvl Hadha Hadhb	Rattus norvegicus (Norway rat)
Beta-catenin phosphorylation cascade	APC membrane recruitment protein 1 Adenomatous polyposis coli protein Axin-1 Casein kinase I isoform alpha Catenin beta-1 FRAT regulator of WNT signaling pathway 1 FRAT regulator of WNT signaling pathway 2 Glycogen synthase kinase-3 beta Protein phosphatase 2 scaffold subunit A alpha Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit beta isoform Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform Serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform Serine/threonine-protein phosphatase 2A catalytic subunit beta isoform	A0A8I5ZMG6 A0A8I5ZRC2 A0A8I6A4C8 A0A8I6A6K6 D3ZCP6 D3ZDI7 M0R5Z2 O70239 P18266 P62716 P63331 P70478 P97633 Q4QQT4 Q5XI34 Q80W83 Q9WU82	Amer1 Apc Axin Axin1 Catnb Csnk1a1 Ctnnb1 Frat1 Frat2 Gsk3b LOC100909468 LOC679110 Ppp2ca Ppp2cb Ppp2r1a Ppp2r1b Ppp2r5a Ppp2r5b Ppp2r5c Ppp2r5d Ppp2r5e	Rattus norvegicus (Norway rat)
Beta-oxidation of pristanoyl-CoA	Acyl-coenzyme A oxidase Acyl-coenzyme A thioesterase 8 Alpha-methylacyl-CoA racemase Carnitine O-acetyltransferase Peroxisomal acyl-coenzyme A oxidase 2 Peroxisomal acyl-coenzyme A oxidase 3 Peroxisomal carnitine O-octanoyltransferase Peroxisomal multifunctional enzyme type 2 Sterol carrier protein 2	A0A8I5ZRR5 P11466 P11915 P70473 P97562 P97852 Q63448 Q704S8 Q8VHK0	Acot8 Acox2 Acox3 Acoxl Amacr Cot Crat Crot Edh17b4 Hsd17b4 Prcox Pte1 Scp-2 Scp2 Thcox	Rattus norvegicus (Norway rat)
Beta-oxidation of very long chain fatty acids	3-ketoacyl-CoA thiolase B, peroxisomal ATP-binding cassette sub-family D member 1 Acyl-CoA thioesterase 4 Acyl-CoA thioesterase 6 Acyl-coenzyme A thioesterase 8 Enoyl-CoA delta isomerase 2 Malonyl-CoA decarboxylase, mitochondrial Peroxisomal 2,4-dienoyl-CoA reductase [(3E)-enoyl-CoA-producing] Peroxisomal acyl-coenzyme A oxidase 1 Peroxisomal bifunctional enzyme Peroxisomal multifunctional enzyme type 2	D3ZHR2 D3ZIQ1 D3ZSE3 P07871 P07872 P07896 P97852 Q5XIC0 Q8VHK0 Q920F5 Q9Z2M4	Abcd1 Acaa1 Acaa1b Acot4 Acot6 Acot8 Acox Acox1 Decr2 Eci2 Edh17b4 Ehhadh Hsd17b4 Mfe1 Mlycd Peci Pte1	Rattus norvegicus (Norway rat)
Bicarbonate transporters	Adenosylhomocysteinase-like 2 Anion exchange protein 2 Anion exchange protein 3 Anion exchange protein 4 Band 3 anion transport protein Electrogenic sodium bicarbonate cotransporter 1 Electrogenic sodium bicarbonate cotransporter 4 Electroneutral sodium bicarbonate exchanger 1 Sodium bicarbonate cotransporter 3 Sodium-driven chloride bicarbonate exchanger	D3ZWL6 P23347 P23348 P23562 Q6RI88 Q6RVG2 Q80ZA5 Q8K4V2 Q9JI66 Q9R1N3	Ae1 Ae2 Ae3 Ae4 Ahcyl2 B3rp2 B3rp3 Nbc Nbc1 Nbc2 Nbc3 Nbce1 Nbcn1 Ncbe Ndcbe1 Rnbc1 Slc4a1 Slc4a10 Slc4a2 Slc4a3 Slc4a4 Slc4a5 Slc4a7 Slc4a8 Slc4a9	Rattus norvegicus (Norway rat)
Biosynthesis of DHA-derived SPMs	Polyunsaturated fatty acid lipoxygenase ALOX12 Polyunsaturated fatty acid lipoxygenase ALOX15 Prostaglandin G/H synthase 2	F1LQ70 P35355 Q02759	Alox12 Alox12l Alox15 Cox-2 Cox2 Ptgs2	Rattus norvegicus (Norway rat)
Biosynthesis of DPAn-3 SPMs	Prostaglandin G/H synthase 2	P35355	Cox-2 Cox2 Ptgs2	Rattus norvegicus (Norway rat)
Biosynthesis of EPA-derived SPMs	Prostaglandin G/H synthase 2	P35355	Cox-2 Cox2 Ptgs2	Rattus norvegicus (Norway rat)
Biosynthesis of electrophilic ω-3 PUFA oxo-derivatives	Polyunsaturated fatty acid 5-lipoxygenase Prostaglandin G/H synthase 2	P12527 P35355	Alox5 Cox-2 Cox2 Ptgs2	Rattus norvegicus (Norway rat)
Biosynthesis of maresin-like SPMs	Cytochrome P450 1A2 Cytochrome P450 2C26-like Cytochrome P450 2D4 Cytochrome P450 2E1 Cytochrome P450 3A18 Cytochrome P450 3A1 Cytochrome P450 3A2 Cytochrome P450 3A9 Cytochrome P450 3A	A0A0G2K5K4 A0A8I6AFV7 P04799 P04800 P05182 P05183 P51538 Q64581 Q64680	Cyp1a-2 Cyp1a2 Cyp2c66 Cyp2d-18 Cyp2d-4 Cyp2d18 Cyp2d4 Cyp2e Cyp2e-1 Cyp2e1 Cyp3a-1 Cyp3a-2 Cyp3a1 Cyp3a11 Cyp3a13 Cyp3a18 Cyp3a2 Cyp3a62 Cyp3a9 LOC100912265	Rattus norvegicus (Norway rat)
Biosynthesis of maresins	Bifunctional epoxide hydrolase 2 Polyunsaturated fatty acid 5-lipoxygenase	P12527 P80299	Alox5 Ephx2	Rattus norvegicus (Norway rat)
Biosynthesis of protectins	Cytochrome P450 1A1 Cytochrome P450 1A2 Leukotriene A-4 hydrolase Polyunsaturated fatty acid lipoxygenase ALOX15	P00185 P04799 P30349 Q02759	Alox12l Alox15 Cyp1a-1 Cyp1a-2 Cyp1a1 Cyp1a2 Lta4h	Rattus norvegicus (Norway rat)

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