GlyCosmos Portal

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Organisms	Evidence
Danio rerio (zebrafish)	GlycomeAtlas
Saccharomyces cerevisiae (brewer's yeast)	GlyTouCan(glycome-db)
Mus musculus (house mouse)	GlyConnectStructure GlyGen(UniCarbKB) GlyTouCan(glycome-db)
Sus scrofa (pig)	GlyTouCan(glycome-db)
Homo sapiens (human)	GlyConnectStructure GlyGen(UniCarbKB) GlyTouCan(glycome-db)

Taxonomic Hierarchy

root

cellular organisms [inference]

Eukaryota (eucaryotes) [inference]

Opisthokonta [inference]

Metazoa (metazoans) [inference]

Eumetazoa [inference]

Bilateria [inference]

Deuterostomia [inference]

Chordata (chordates) [inference]

Craniata [inference]

Vertebrata (vertebrates) [inference]

Gnathostomata (jawed vertebrates) [inference]

Teleostomi [inference]

Euteleostomi (bony vertebrates) [inference]

Sarcopterygii [inference]

Dipnotetrapodomorpha [inference]

Tetrapoda (tetrapods) [inference]

Amniota (amniotes) [inference]

Mammalia (mammals) [inference]

Theria [inference]

Eutheria (placentals) [inference]

Boreoeutheria [inference]

Euarchontoglires [inference]

Glires (Rodents and rabbits) [inference]

Rodentia (rodent) [inference]

Myomorpha (mice and others) [inference]

Muroidea [inference]

Muridae [inference]

Murinae [inference]

Mus (mice) [inference]

Mus [inference]

Mus musculus (house mouse)

Rattus [inference]

Rattus norvegicus (Norway rat)

Cricetidae [inference]

Cricetinae (hamsters) [inference]

Cricetulus [inference]

Cricetulus griseus (Chinese hamster)

Primates [inference]

Haplorrhini [inference]

Simiiformes [inference]

Catarrhini [inference]

Hominoidea (apes) [inference]

Hominidae (great apes) [inference]

Homininae [inference]

Homo [inference]

Homo sapiens (human)

Laurasiatheria [inference]

Artiodactyla (even-toed ungulates & whales) [inference]

Ruminantia [inference]

Pecora [inference]

Bovidae [inference]

Bovinae [inference]

Bos (cattle) [inference]

Bos taurus (domestic cattle)

Suina [inference]

Suidae (pigs) [inference]

Sus [inference]

Sus scrofa (pig)

Carnivora (carnivores) [inference]

Caniformia [inference]

Canidae (dog, coyote, wolf, fox) [inference]

Canis [inference]

Canis lupus (gray wolf) [inference]

Canis lupus familiaris (dog)

Actinopterygii (ray-finned fishes) [inference]

Actinopteri [inference]

Neopterygii [inference]

Teleostei (teleost fishes) [inference]

Osteoglossocephalai [inference]

Clupeocephala [inference]

Otomorpha [inference]

Ostariophysi [inference]

Otophysi [inference]

Cypriniphysae [inference]

Cypriniformes (carps and others) [inference]

Cyprinoidei [inference]

Danionidae [inference]

Danioninae [inference]

Danio [inference]

Danio rerio (zebrafish)

Fungi [inference]

Dikarya [inference]

Ascomycota (ascomycetes) [inference]

saccharomyceta [inference]

Saccharomycotina (true yeasts) [inference]

Saccharomycetes [inference]

Saccharomycetales [inference]

Saccharomycetaceae [inference]

Saccharomyces [inference]

Saccharomyces cerevisiae (brewer's yeast)

GlycoGene Database (GGDB)

Displaying entries **1 - 5** of 8 in total

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Gene Symbol	Donor	Acceptor	Reducing terminal(Acceptor)	Product	Reducing terminal(Product)	Reference
ST3GAL4	CMP-Neu5Ac	G00031MO	free	G65562ZE	free	8288606
ST6GALNAC3	CMP-Neu5Ac	G65562ZE	Ser/Thr	G01614ZM	Ser/Thr	16169874
ST6GALNAC4	CMP-Neu5Ac	G65562ZE	R	G01614ZM	R	11062056
ST3GAL1	CMP-Neu5Ac	G00031MO	Thr	G65562ZE	Thr	8027041
ST6GALNAC4	CMP-Neu5Ac	G65562ZE	Ser/Thr	G01614ZM	Ser/Thr	11062056

Displaying entries **1 - 5** of 14 in total

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Gene Symbol	Donor	Acceptor	Reducing terminal(Acceptor)	Product	Reducing terminal(Product)	Reference
ST3GAL4	CMP-Neu5Ac	G00031MO	free	G65562ZE	free	8288606
ST3GAL1	CMP-Neu5Ac	G00031MO	Antifreeze glycoprotein	G65562ZE	Antifreeze glycoprotein	8027041
ST6GALNAC3	CMP-Neu5Ac	G65562ZE	Ser/Thr	G01614ZM	Ser/Thr	10536037 16169874
ST3GAL3	CMP-Neu5Ac	G00031MO	free	G65562ZE	free	8288606
ST6GALNAC4	CMP-Neu5Ac	G65562ZE	R	G01614ZM	R	11062056

Displaying **all 3** entries
Gene Symbol	Donor	Acceptor	Reducing terminal(Acceptor)	Reference
ST6GALNAC2	CMP-Neu5Ac	G65562ZE	benzyl	11062056
GAL3ST3	PAPS	G65562ZE	octyl	11323440
GAL3ST2	PAPS	G65562ZE	octyl	11323440

KEGG BRITE Database

KEGG ID

Enzyme

Reactions

Displaying **all 2** entries
KEGG Reaction	Enzyme	Acceptor	Product
R05913	2.4.3.4	G00031MO	G65562ZE
R05914	2.4.3.3 2.4.3.7	G65562ZE	G01614ZM

Core Protein

Displaying entries **1 - 10** of 39 in total

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UniProt ID	Protein Name	Reference	Source
D9N008	Epiglycanin	1125949 115878	GlyConnect
P00743	Coagulation factor X	6767721	GlyConnect
P00747	Plasminogen	1899031 2059624 2065054 2386787 3356193 479158 9054441	GlyGen GlyConnect
P01215	Glycoprotein hormones alpha chain	3335536	GlyGen
P01588	Erythropoietin	7737204 8054720 8460945 8477709	GlyGen GlyConnect
P01824	Immunoglobulin heavy variable 4-39	6619128	GlyGen GlyConnect
P01876	Immunoglobulin heavy constant alpha 1	1280920 2628063 7215351 9442070	GlyGen GlyConnect
P01880	Immunoglobulin heavy constant delta	15557177	GlyGen GlyConnect
P02656	Apolipoprotein C-III	208636	GlyGen GlyConnect
P02668	Kappa-casein	427192 7317452 7397215	GlyConnect

GlycomeAtlas

Tissues in which this glycan is expressed are highlighted in yellow.

Danio rerio

Literature

Tissue

heart
intestine
liver

Reference

Yamakawa N et al. Systems glycomics of adult zebrafish identifies organ-specific sialylation and glycosylation patterns. Nat Commun. 2018;9(1):4647. Published 2018 Nov 7. doi:10.1038/s41467-018-06950-3

DOI

10.1038/s41467-018-06950-3

Localization sites organized by hierarchy by Uber-anatomy ontology (UBERON)

material anatomical entity

anatomical structure

endoderm-derived structure

liver

mesoderm-derived structure

heart

multicellular anatomical structure

organ

gland

exocrine gland

liver

endocrine gland

digestive system gland

liver

compound organ

circulatory organ

primary circulatory organ

heart

trunk region element

abdominal segment element

abdomen element

liver

thoracic segment organ

heart

digestive system element

digestive system gland

liver

organ part

subdivision of tube

subdivision of digestive tract

intestine

structure with developmental contribution from neural crest

heart

Sequence Descriptors

GlycoCT

RES
1b:a-dgal-HEX-1:5
2s:n-acetyl
3b:b-dgal-HEX-1:5
4b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d
5s:n-acetyl
LIN
1:1d(2+1)2n
2:1o(3+1)3d
3:3o(3+2)4d
4:4d(5+1)5n

WURCS

WURCS=2.0/3,3,2/[a2112h-1a_1-5_2*NCC/3=O][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O]/1-2-3/a3-b1_b3-c2

GlyTouCan

GlyComb

GlycoPOST

UniCarb-DR

LM-GlycoRepo

All Resources

Other Information

Tools

Search Tools

Summary

External Links

3D Structures

KEGG BRITE Database

Literature

Sequence Descriptors

International Collaboration

Acknowledgements