GlyCosmos Pathways

Integrated of pathway data, containing glycoproteins and glycans obtained from Reactome and the Metabolism of carbohydrates in Escherichia coli O-antigens obtained from ECODAB. Search by pathway name, species, and protein name.

Source Last Updated
Reactome March 20, 2024
ECODAB April 1, 2019
Displaying entries 251 - 275 of 1070 in total
Pathway Name Protein Name UniProt ID Gene Symbol Organism GlyTouCan ID ▼
Terminal pathway of complement
  • C5
  • C6
Rattus norvegicus (Norway rat)
Transport of bile salts and organic acids, metal ions and amine compounds
  • Cd92
  • Cdw92
  • Cht1
  • Ctl1
  • Ctl2
  • Ctl3
  • Ctl4
  • Mate1
  • Ng22
  • Slc10a6
  • Slc14a1
  • Slc14a2
  • Slc44a1
  • Slc44a2
  • Slc44a3
  • Slc44a4
  • Slc44a5
  • Slc47a1
  • Slc5a7
  • Soat
  • TPPT1
  • UT11
  • UT3
  • Ut2
Rattus norvegicus (Norway rat)
Branched-chain amino acid catabolism
  • Acad8
  • Acadsb
  • Acat1
  • Aldh6a1
  • Auh
  • Bcat1
  • Bcat2
  • Bcatm
  • Bckdha
  • Bckdhb
  • Bckdk
  • Dbt
  • Dld
  • Eca40
  • Echs1
  • Erab
  • Hadh2
  • Hibadh
  • Hibch
  • Hsd17b10
  • Ivd
  • Mcca
  • Mccc1
  • Mccc2
  • Mmsdh
Rattus norvegicus (Norway rat)
Synthesis of UDP-N-acetyl-glucosamine
  • Amdhd2
  • Gfpt1
  • Gfpt2
  • Nagk
  • Pgm3
  • Renbp
  • Uap1
Rattus norvegicus (Norway rat)
MyD88 cascade initiated on plasma membrane
  • Ecsit
  • Map3k1
  • Mekk
  • Mekk1
  • Traf6
Rattus norvegicus (Norway rat)
Localization of the PINCH-ILK-PARVIN complex to focal adhesions
  • Actp
  • ILK1
  • ILK2
  • Ilk
  • Itgb1
  • Parva
  • Pxn
Rattus norvegicus (Norway rat)
Acyl chain remodelling of PC
  • Aytl1
  • Aytl1a
  • Aytl2
  • Cpla2
  • Grcc3f
  • H-rev107
  • Hrasls3
  • Hrev107
  • Lpcat1
  • Lpcat2
  • Lpcat2a
  • Lpcat3
  • Lpcat4
  • Mboat2
  • Mboat5
  • Oact2
  • Oact5
  • Phlpb
  • Pla2g10
  • Pla2g12a
  • Pla2g16
  • Pla2g1b
  • Pla2g2a
  • Pla2g2d
  • Pla2g2f
  • Pla2g3
  • Pla2g4
  • Pla2g4a
  • Pla2g4b
  • Pla2g4c
  • Pla2g4d
  • Pla2g4e
  • Pla2g4f
  • Pla2g5
  • Pla2g6
  • Pla2r1
  • Plaat3
  • Plb1
  • Plbd1
  • Pnpla8
  • Pnpla9
  • Rlp-3
  • Tmem86b
Rattus norvegicus (Norway rat)
VEGF binds to VEGFR leading to receptor dimerization
  • Figf
  • Flk1
  • Flt-1
  • Flt-4
  • Flt1
  • Flt4
  • Kdr
  • Pgf
  • Plgf
  • Vegf
  • Vegfa
  • Vegfb
  • Vegfc
  • Vegfd
  • Vegfr1
  • Vegfr3
  • Vrf
Rattus norvegicus (Norway rat)
Chromatin modifying enzymes
  • Baf190a
  • Brg1
  • Brwd1
  • H3c13
  • Hist2h3c2
  • Pad1
  • Pad2
  • Pad3
  • Pad4
  • Padi1
  • Padi2
  • Padi3
  • Padi4
  • Padi6
  • Pdi
  • Pdi1
  • Pdi2
  • Pdi3
  • Pdi4
  • Smarca4
  • Snf2b
  • Snf2l4
Rattus norvegicus (Norway rat)
RHOB GTPase cycle
  • Abr
  • Actc
  • Actc1
  • Akap13
  • Anln
  • Arhb
  • Arhgap1
  • Arhgap21
  • Arhgap26
  • Arhgap32
  • Arhgap35
  • Arhgap5
  • Arhgap7
  • Arhgdig
  • Arhgef1
  • Arhgef10
  • Arhgef10l
  • Arhgef11
  • Arhgef12
  • Arhgef17
  • Arhgef2
  • Arhgef25
  • Arhgef28
  • Arhgef3
  • Arhgef5
  • Bcr
  • CRIK
  • Cav
  • Cav1
  • Cavin1
  • Cit
  • Daam1
  • Depdc1b
  • Diap1
  • Diaph1
  • Diaph3
  • Dlc1
  • Ect2
  • Flot1
  • Flot2
  • Geft
  • Grlf1
  • Iqgap3
  • Jup
  • Lsc
  • Mcam
  • Mcf2
  • Mcf2l
  • Muc18
  • Myo9a
  • Myo9b
  • Myr5
  • Myr7
  • Net1
  • Ophn1
  • Ost
  • P190A
  • Pak2
  • Pcdh7
  • Pg
  • Pik3r1
  • Pik3r2
  • Pkn
  • Pkn1
  • Pkn2
  • Prex1
  • Prk1
  • Prk2
  • Prkcl1
  • Prkcl2
  • Ptrf
  • RGD1565043
  • Racgap1
  • Reg1
  • Reg2
  • Rgnef
  • Rhob
  • Rhogap
  • Rhpn2
  • Rock1
  • Rock2
  • Rt13
  • Rtkn
  • Sk2
  • Slk
  • Snap23
  • Sowahc
  • Stard12
  • Stard13
  • Stard8
  • Stk10
  • Stom
  • Syb3
  • Tfrc
  • Tjp2
  • Trfr
  • Vamp3
  • Vangl1
  • Vav2
  • p190ARHOGAP
Rattus norvegicus (Norway rat)
Fatty acyl-CoA biosynthesis
  • Acac
  • Acaca
  • Acly
  • Acsvl1
  • Cbr4
  • Cln1
  • Facvl1
  • Fasn
  • Fatp2
  • Hsd17b8
  • Morc2
  • Ppt
  • Ppt1
  • Ppt2
  • Rpp14
  • Scd2
  • Slc27a2
  • Vlacs
  • Vlcs
Rattus norvegicus (Norway rat)
BBSome-mediated cargo-targeting to cilium
  • Arl6
  • Bbs1
  • Bbs2
  • Bbs4
  • Bbs7
  • Bbs9
  • Gpr24
  • Lztfl1
  • Mchr1
  • Rab3ip
  • Rabin3
  • Rabin8
  • Slc1
  • Smo
  • Smoh
  • Sstr3
  • Ttc8
Rattus norvegicus (Norway rat)
Transport of inorganic cations/anions and amino acids/oligopeptides
  • Ctns
  • Eaac1
  • Eaat1
  • Eaat2
  • Eaat3
  • Eaat4
  • Glt1
  • Slc1a1
  • Slc1a2
  • Slc1a3
  • Slc1a6
  • Slc1a7
  • Slc25a26
  • Slc32a1
  • Vgat
  • Viaat
Rattus norvegicus (Norway rat)
Activation of the phototransduction cascade
  • CNCG2
  • CNCG3L
  • CNCG4
  • Cncg
  • Cncg1
  • Cnga1
  • Cngb1
  • Gnat1
  • Gnb1
  • Gngt1
  • Pde6a
  • Pde6b
  • Pde6g
  • RCNC2
  • Rho
Rattus norvegicus (Norway rat)
Neurofascin interactions
  • Ank1
  • Nfasc
  • Sdcbp
Rattus norvegicus (Norway rat)
Deposition of new CENPA-containing nucleosomes at the centromere
  • Cenpc
  • Cenpc1
  • Cenph
  • Cenpi
  • Cenpk
  • Cenpl
  • Cenpm
  • Cenpn
  • Cenpo
  • Cenpp
  • Cenpq
  • Cenpr
  • Cenpt
  • Cenpu
  • Cenpw
  • Cug2
  • ENSRNOG00000062927
  • ENSRNOG00000064540
  • ENSRNOG00000066901
  • ENSRNOG00000068034
  • Fshprh1
  • H2ab3
  • H2ac10
  • H2ac18
  • H2ac4
  • H2afb3
  • H2afx
  • H2aj
  • H2ax
  • H2az2
  • H2bc1
  • H2bc12l1
  • H2bc6
  • H2bcl1
  • H2bcl2
  • H2bu1
  • H4c16
  • H4c2
  • H4f16
  • H4ft
  • Hist1h2ba
  • Hist1h2bc
  • Hist1h2bg
  • Hist1h2bo
  • Hist1h2bq
  • Hist1h4b
  • Hist1h4m
  • Hist2h2aa3
  • Hist4
  • Hist4h4
  • Hjurp
  • Itgb3bp
  • Knl1
  • LOC100365043
  • LOC100910200
  • LOC120097726
  • LOC679342
  • LOC681185
  • LOC684797
  • Lrpr1
  • Mis18a
  • Mis18bp1
  • Mlf1ip
  • Npm1
  • Nrif3
  • Oip5
  • Rbbp4
  • Rbbp7
  • Rsf1
  • Ruvbl1
  • Smarca5
  • Th2b
  • Tip49
  • Tip49a
Rattus norvegicus (Norway rat)
Processing of SMDT1
  • Afg3l2
  • Bcap37
  • Cbara1
  • Efha1
  • Maip1
  • Mcu
  • Mcub
  • Micu1
  • Micu2
  • Micu3
  • Mppa
  • Mppb
  • Parl
  • Phb
  • Phb1
  • Phb2
  • Pmpca
  • Pmpcb
  • Psarl
  • Smdt1
  • Smhs2
  • Spg7
  • Stoml2
  • Yme1l1
Rattus norvegicus (Norway rat)
Biosynthesis of the N-glycan precursor (dolichol lipid-linked oligosaccharide, LLO) and transfer to a nascent protein
  • Alg1
  • Alg12
  • Alg13
  • Alg14
  • Alg2
  • Alg3
  • Alg6
  • Alg8
  • Alg9
  • Dpagt1
  • Mpdu1
Rattus norvegicus (Norway rat)
DAP12 signaling
  • Ash
  • B2m
  • Btk
  • Cd94
  • Dap12
  • Fyn
  • Grap2
  • Grb2
  • Hras
  • Hras1
  • Klrc1
  • Klrd1
  • Klrk1
  • Kras
  • Kras2
  • Lat
  • Lck
  • Lcp2
  • Nkg2d
  • Nkrp2
  • Nras
  • Pik3ca
  • Pik3cb
  • Pik3r1
  • Pik3r2
  • Plcg1
  • Plcg2
  • Rac
  • Rac1
  • Shc1
  • Sos1
  • Syk
  • Trem2
  • Tyrobp
  • Vav2
  • Vav3
Rattus norvegicus (Norway rat)
Interconversion of nucleotide di- and triphosphates
  • Ak1
  • Ak2
  • Ak3l1
  • Ak4
  • Ak5
  • Ak6
  • Ak7
  • Ak8
  • Ak9
  • Akd2
  • Cinap
  • Cmpk
  • Cmpk1
  • Ctps1
  • Ctps2
  • Dctd
  • Dtymk
  • Dut
  • Dutp
  • Glrx
  • Glrx1
  • Grx
  • Gsr
  • Guk1
  • Nme1
  • Nme2
  • Nme3
  • Nudt13
  • RGD1559879
  • Rrm1
  • Rrm2
  • Rrm2b
  • Trxr1
  • Txn
  • Txn1
  • Txnrd1
  • Tyms
Rattus norvegicus (Norway rat)
PDH complex synthesizes acetyl-CoA from PYR
  • Dlat
  • Dld
  • LOC311254
  • Pdha1
  • Pdha1l1
  • Pdha2
  • Pdhb
  • Pdhx
Rattus norvegicus (Norway rat)
GABA receptor activation
  • Arhgef9
  • Gabra-1
  • Gabra-2
  • Gabra-3
  • Gabra-5
  • Gabra-6
  • Gabra1
  • Gabra2
  • Gabra3
  • Gabra4
  • Gabra5
  • Gabra6
  • Gabrb-1
  • Gabrb-2
  • Gabrb-3
  • Gabrb1
  • Gabrb2
  • Gabrb3
  • Gabrg2
  • Gabrg3
  • Gabrq
  • Gabrr1
  • Gabrr2
  • Gabrr3
Rattus norvegicus (Norway rat)
Abacavir transmembrane transport
  • Oct1
  • Oct2
  • Oct3
  • Slc22a1
  • Slc22a2
  • Slc22a3
Rattus norvegicus (Norway rat)
Hedgehog 'off' state
  • Adcy1
  • Adcy10
  • Adcy2
  • Adcy3
  • Adcy4
  • Adcy5
  • Adcy6
  • Adcy7
  • Adcy8
  • Adcy9
  • Dhc1b
  • Dlp4
  • Dnch2
  • Dnchc2
  • Dync2h1
  • Fuz
  • Gli1
  • Gli2
  • Gli3
  • Gpr161
  • Ift122
  • Ift140
  • Ift172
  • Ift52
  • Ift57
  • Ift88
  • Intu
  • Kif3a
  • Kif7
  • LOC100364088
  • Mks1
  • Ofd1
  • Pdzd6
  • Pkacb
  • Prkaca
  • Prkacb
  • Prkar1a
  • Prkar1b
  • Prkar2a
  • Prkar2b
  • Ptch
  • Ptch1
  • Rpgrip1l
  • Sac
  • Slb
  • Smo
  • Smoh
  • Sufu
  • Ttc21b
  • Tulp3
  • Wdr19
  • Wdr35
Rattus norvegicus (Norway rat)
Activated NTRK2 signals through FRS2 and FRS3
  • Ash
  • Bdnf
  • Frs2
  • Grb2
  • Nt4
  • Ntf4
  • Ntf5
  • Ntrk2
  • Sos1
  • Trkb
Rattus norvegicus (Norway rat)

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GlyCosmos is a member of the GlySpace Alliance together with GlyGen and Glycomics@ExPASy.

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Supported by JST NBDC Grant Number JPMJND2204

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