GlyCosmos Pathways

Integrated of pathway data, containing glycoproteins and glycans obtained from Reactome and the Metabolism of carbohydrates in Escherichia coli O-antigens obtained from ECODAB. Search by pathway name, species, and protein name.

Source Last Updated
Reactome March 20, 2024
ECODAB April 1, 2019
Displaying entries 301 - 325 of 1070 in total
Pathway Name Protein Name UniProt ID Gene Symbol ▼ Organism GlyTouCan ID
Ubiquitin Mediated Degradation of Phosphorylated Cdc25A
  • Cdc25a
  • Chek1
  • Chk1
  • LOC100360645
  • LOC100360846
  • LOC100365869
  • Lmp10
  • Lmp2
  • Mecl1
  • Mss1
  • Psma1
  • Psma2
  • Psma3
  • Psma4
  • Psma5
  • Psma6
  • Psma7
  • Psma8
  • Psmb1
  • Psmb10
  • Psmb2
  • Psmb3
  • Psmb4
  • Psmb5
  • Psmb6
  • Psmb6l
  • Psmb6l1
  • Psmb7
  • Psmb8
  • Psmb9
  • Psmc1
  • Psmc2
  • Psmc3
  • Psmc4
  • Psmc5
  • Psmc6
  • Psmd1
  • Psmd10
  • Psmd11
  • Psmd12
  • Psmd13
  • Psmd14
  • Psmd2
  • Psmd3
  • Psmd5
  • Psmd6
  • Psmd7
  • Psmd8
  • Psmd9
  • Psme1
  • Psme2
  • Psme4
  • Psmf1
  • Ring12
  • Rps27a
  • Sug1
  • Tbp1
  • Tbp7
  • Uba80
  • Ubb
  • Ubbl1
  • Ubc
  • Ubcep1
  • Ubcl1
Rattus norvegicus (Norway rat)
Inhibition of the proteolytic activity of APC/C required for the onset of anaphase by mitotic spindle checkpoint components
  • Cdc20
  • Mad2l1
Rattus norvegicus (Norway rat)
MAPK3 (ERK1) activation
  • Cdc2
  • Cdc2a
  • Cdk1
  • Cdkn1
  • Erk1
  • Il-6
  • Il6
  • Il6r
  • Il6ra
  • Il6st
  • Jak1
  • Jak2
  • Map2k1
  • Mapk3
  • Mek1
  • Prkm3
  • Prkmk1
  • Ptpn11
  • Tyk2
Rattus norvegicus (Norway rat)
Transport of bile salts and organic acids, metal ions and amine compounds
  • Cd92
  • Cdw92
  • Cht1
  • Ctl1
  • Ctl2
  • Ctl3
  • Ctl4
  • Mate1
  • Ng22
  • Slc10a6
  • Slc14a1
  • Slc14a2
  • Slc44a1
  • Slc44a2
  • Slc44a3
  • Slc44a4
  • Slc44a5
  • Slc47a1
  • Slc5a7
  • Soat
  • TPPT1
  • UT11
  • UT3
  • Ut2
Rattus norvegicus (Norway rat)
Other semaphorin interactions
  • Cd72
  • Dap12
  • Plxna1
  • Plxnb3
  • Plxnc1
  • Plxnd1
  • Ptprc
  • Sema3e
  • Sema4a
  • Sema4d
  • Sema5a
  • Sema6d
  • Sema7a
  • Trem2
  • Tyrobp
Rattus norvegicus (Norway rat)
Hyaluronan uptake and degradation
  • Cd44
  • Chp
  • Chp1
  • Gus
  • Gusb
  • Hexa
  • Hexb
  • Hyal1
  • Hyal2
  • Hyal3
  • Nhe1
  • Slc9a1
Rattus norvegicus (Norway rat)
Phosphate bond hydrolysis by NTPDase proteins
  • Cd39
  • Cd39l1
  • Cd39l2
  • Entpd1
  • Entpd2
  • Entpd3
  • Entpd4
  • Entpd5
  • Entpd6
  • Entpd7
  • Entpd8
Rattus norvegicus (Norway rat)
Cross-presentation of particulate exogenous antigens (phagosomes)
  • Cd36
  • Cyba
  • Cybb
  • Fat
  • Itgav
  • Itgb5
  • Ncf1
  • Ncf2
  • Ncf4
Rattus norvegicus (Norway rat)
TNFs bind their physiological receptors
  • Cd30
  • Eda
  • Eda2r
  • Edar
  • Edaradd
  • Lta
  • Opg
  • Opgl
  • Ox40
  • Ox40l
  • Rankl
  • Tl1
  • Tnfb
  • Tnfr-1
  • Tnfr1
  • Tnfr2
  • Tnfrsf11b
  • Tnfrsf13b
  • Tnfrsf14
  • Tnfrsf17
  • Tnfrsf18
  • Tnfrsf1a
  • Tnfrsf1b
  • Tnfrsf25
  • Tnfrsf4
  • Tnfrsf8
  • Tnfrsf9
  • Tnfsf1
  • Tnfsf11
  • Tnfsf13
  • Tnfsf13b
  • Tnfsf15
  • Tnfsf18
  • Tnfsf4
  • Tnfsf8
  • Tnfsf9
  • Tnlg3a
  • Tnlg5a
  • Trance
  • Txgp1
  • Txgp1l
  • Vegi
Rattus norvegicus (Norway rat)
CD28 co-stimulation
  • Cd28
  • Cd80
  • Cd86
  • Fyn
  • Grap2
  • Lck
  • Lyn
  • Src
  • Yes1
Rattus norvegicus (Norway rat)
Synthesis, secretion, and inactivation of Glucose-dependent Insulinotropic Polypeptide (GIP)
  • Cd26
  • Dpp4
  • Ffar1
  • Gip
  • Gpr119
  • Gpr40
Rattus norvegicus (Norway rat)
Synthesis, secretion, and inactivation of Glucagon-like Peptide-1 (GLP-1)
  • Cd26
  • Dpp4
  • Ffar1
  • Ffar4
  • Gcg
  • Gpr119
  • Gpr120
  • Gpr40
  • Grp
  • Lep
  • O3far1
  • Ob
Rattus norvegicus (Norway rat)
Cross-presentation of soluble exogenous antigens (endosomes)
  • Cd207
  • Endo180
  • Fcgr1a
  • LOC100360846
  • LOC100365869
  • Lmp10
  • Lmp2
  • Mecl1
  • Mrc1
  • Mrc2
  • Mss1
  • Psma1
  • Psma2
  • Psma3
  • Psma4
  • Psma5
  • Psma6
  • Psma7
  • Psma8
  • Psmb1
  • Psmb10
  • Psmb2
  • Psmb3
  • Psmb4
  • Psmb5
  • Psmb6
  • Psmb6l
  • Psmb6l1
  • Psmb7
  • Psmb8
  • Psmb9
  • Psmc1
  • Psmc2
  • Psmc3
  • Psmc4
  • Psmc5
  • Psmc6
  • Psmd1
  • Psmd10
  • Psmd11
  • Psmd12
  • Psmd13
  • Psmd14
  • Psmd2
  • Psmd3
  • Psmd5
  • Psmd6
  • Psmd7
  • Psmd8
  • Psmd9
  • Psme1
  • Psme2
  • Psme4
  • Psmf1
  • Ring12
  • Sug1
  • Tbp1
  • Tbp7
Rattus norvegicus (Norway rat)
Common Pathway of Fibrin Clot Formation
  • Cd177
  • Cxcl4
  • F10
  • F13a
  • F13a1
  • F13b
  • F2
  • F2r
  • F8
  • Fga
  • Fgb
  • Fgg
  • Hcf2
  • Par1
  • Pf4
  • Pi7
  • Pn1
  • Proc
  • Procr
  • Pros
  • Pros1
  • Prtn3
  • Scyb4
  • Serpina5
  • Serpinc1
  • Serpind1
  • Serpine2
  • Thbd
Rattus norvegicus (Norway rat)
Type I hemidesmosome assembly
  • Cd151
  • Col17a1
  • Dst
  • Egfl3
  • Itga6
  • Itgb4
  • Megf6
  • Peta3
  • Plec
  • Plec1
Rattus norvegicus (Norway rat)
MyD88-independent TLR4 cascade
  • Cd14
  • Ly96
  • Plin3
  • Sarm1
  • Ticam1
  • Ticam2
  • Tlr4
Rattus norvegicus (Norway rat)
Transfer of LPS from LBP carrier to CD14
  • Cd14
  • Lbp
Rattus norvegicus (Norway rat)
IRAK2 mediated activation of TAK1 complex upon TLR7/8 or 9 stimulation
  • Cd14
  • Irak2
  • LOC100360645
  • Ly96
  • Map3k7
  • Map3k7ip2
  • Plin3
  • Rps27a
  • Tab1
  • Tab2
  • Tab3
  • Ticam1
  • Ticam2
  • Tlr4
  • Traf6
  • Uba80
  • Ubb
  • Ubbl1
  • Ubc
  • Ubcep1
  • Ubcl1
Rattus norvegicus (Norway rat)
TRAF6-mediated induction of TAK1 complex within TLR4 complex
  • Cd14
  • Irak2
  • LOC100360645
  • Ly96
  • Map3k7
  • Map3k7ip2
  • Plin3
  • Rps27a
  • Sarm1
  • Tab1
  • Tab2
  • Tab3
  • Ticam1
  • Ticam2
  • Tlr4
  • Traf6
  • Uba80
  • Ubb
  • Ubbl1
  • Ubc
  • Ubcep1
  • Ubcl1
Rattus norvegicus (Norway rat)
Regulation of TBK1, IKKε (IKBKE)-mediated activation of IRF3, IRF7
  • Cd14
  • Ikbke
  • LOC100360645
  • Ly96
  • Optn
  • Plin3
  • Rps27a
  • Tank
  • Tbk1
  • Ticam1
  • Ticam2
  • Tlr4
  • Traf3
  • Uba80
  • Ubb
  • Ubbl1
  • Ubc
  • Ubcep1
  • Ubcl1
Rattus norvegicus (Norway rat)
Activation of IRF3, IRF7 mediated by TBK1, IKKε (IKBKE)
  • Cd14
  • Ikbke
  • Irf3
  • Irf7
  • LOC100360645
  • Ly96
  • Optn
  • Plin3
  • Ptpn11
  • Rps27a
  • Sarm1
  • Tank
  • Tbk1
  • Ticam1
  • Ticam2
  • Tlr4
  • Traf3
  • Uba80
  • Ubb
  • Ubbl1
  • Ubc
  • Ubcep1
  • Ubcl1
Rattus norvegicus (Norway rat)
RHOBTB1 GTPase cycle
  • Cct2
  • Cct7
  • Cctb
  • Cops1
  • Cops2
  • Cops4
  • Cpsf7
  • Csn1
  • Csn2
  • Csn4
  • Cul3
  • Gps1
  • Hnrnpc
  • Hnrpc
  • LOC100365546
  • Myo6
  • Pde5
  • Pde5a
  • Rbbp6
  • Rbmx
  • Rbmxrt
  • Rhobtb1
  • Rnf20
  • Rock1
  • Rock2
  • Sfrs10
  • Spen
  • Srrm1
  • Stk38
  • Tra2b
  • Trip15
  • Trp
  • Txnl1
  • Vim
Rattus norvegicus (Norway rat)
Association of TriC/CCT with target proteins during biosynthesis
  • Cct1
  • Cct2
  • Cct3
  • Cct4
  • Cct5
  • Cct6a
  • Cct6b
  • Cct7
  • Cct8
  • Ccta
  • Cctb
  • LOC363658
  • Sphk1
  • Tcp1
Rattus norvegicus (Norway rat)
Cooperation of PDCL (PhLP1) and TRiC/CCT in G-protein beta folding
  • Cct1
  • Cct2
  • Cct3
  • Cct4
  • Cct5
  • Cct6a
  • Cct6b
  • Cct7
  • Cct8
  • Ccta
  • Cctb
  • Ck2n
  • Csnk2a1
  • Csnk2a2
  • Csnk2b
  • Gnb1
  • Gnb2
  • Gnb3
  • Gnb4
  • Gnb5
  • LOC363658
  • Pdcl
  • Rgs7
  • Rgs9
  • Tcp1
Rattus norvegicus (Norway rat)
RHOBTB3 ATPase cycle
  • Ccne
  • Ccne1
  • Cul3
  • Hgs
  • Hrs
  • Hrs2
  • Htr7
  • Lrrc41
  • Rab9
  • Rab9a
  • Rab9b
  • Rhobtb3
  • Vhl
Rattus norvegicus (Norway rat)

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GlyCosmos is a member of the GlySpace Alliance together with GlyGen and Glycomics@ExPASy.

Acknowledgements

Supported by JST NBDC Grant Number JPMJND2204

Partly supported by NIH Common Fund Grant #1U01GM125267-01


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