GlyCosmos Portal

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Organisms	Evidence
Danio rerio (zebrafish)	GlycomeAtlas
Saccharomyces cerevisiae (brewer's yeast)	GlyTouCan(glycome-db)
Mus musculus (house mouse)	GlyConnectStructure GlyGen(UniCarbKB) GlyTouCan(glycome-db)
Sus scrofa (pig)	GlyTouCan(glycome-db)
Homo sapiens (human)	GlyConnectStructure GlyGen(UniCarbKB) GlyTouCan(glycome-db)

Taxonomic Hierarchy

root

cellular organisms [inference]

Eukaryota (eucaryotes) [inference]

Opisthokonta [inference]

Metazoa (metazoans) [inference]

Eumetazoa [inference]

Bilateria [inference]

Deuterostomia [inference]

Chordata (chordates) [inference]

Craniata [inference]

Vertebrata (vertebrates) [inference]

Gnathostomata (jawed vertebrates) [inference]

Teleostomi [inference]

Euteleostomi (bony vertebrates) [inference]

Sarcopterygii [inference]

Dipnotetrapodomorpha [inference]

Tetrapoda (tetrapods) [inference]

Amniota (amniotes) [inference]

Mammalia (mammals) [inference]

Theria [inference]

Eutheria (placentals) [inference]

Boreoeutheria [inference]

Euarchontoglires [inference]

Glires (Rodents and rabbits) [inference]

Rodentia (rodent) [inference]

Myomorpha (mice and others) [inference]

Muroidea [inference]

Muridae [inference]

Murinae [inference]

Mus (mice) [inference]

Mus [inference]

Mus musculus (house mouse)

Rattus [inference]

Rattus norvegicus (Norway rat)

Cricetidae [inference]

Cricetinae (hamsters) [inference]

Cricetulus [inference]

Cricetulus griseus (Chinese hamster)

Primates [inference]

Haplorrhini [inference]

Simiiformes [inference]

Catarrhini [inference]

Hominoidea (apes) [inference]

Hominidae (great apes) [inference]

Homininae [inference]

Homo [inference]

Homo sapiens (human)

Laurasiatheria [inference]

Artiodactyla (even-toed ungulates & whales) [inference]

Ruminantia [inference]

Pecora [inference]

Bovidae [inference]

Bovinae [inference]

Bos (cattle) [inference]

Bos taurus (domestic cattle)

Suina [inference]

Suidae (pigs) [inference]

Sus [inference]

Sus scrofa (pig)

Carnivora (carnivores) [inference]

Caniformia [inference]

Canidae (dog, coyote, wolf, fox) [inference]

Canis [inference]

Canis lupus (gray wolf) [inference]

Canis lupus familiaris (dog)

Actinopterygii (ray-finned fishes) [inference]

Actinopteri [inference]

Neopterygii [inference]

Teleostei (teleost fishes) [inference]

Osteoglossocephalai [inference]

Clupeocephala [inference]

Otomorpha [inference]

Ostariophysi [inference]

Otophysi [inference]

Cypriniphysae [inference]

Cypriniformes (carps and others) [inference]

Cyprinoidei [inference]

Danionidae [inference]

Danioninae [inference]

Danio [inference]

Danio rerio (zebrafish)

Fungi [inference]

Dikarya [inference]

Ascomycota (ascomycetes) [inference]

saccharomyceta [inference]

Saccharomycotina (true yeasts) [inference]

Saccharomycetes [inference]

Saccharomycetales [inference]

Saccharomycetaceae [inference]

Saccharomyces [inference]

Saccharomyces cerevisiae (brewer's yeast)

GlycoGene Database (GGDB)

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Gene Symbol	Donor	Acceptor	Reducing terminal(Acceptor)	Product	Reducing terminal(Product)	Reference
ST3GAL4	CMP-Neu5Ac	G00031MO	free	G65562ZE	free	8288606
ST6GALNAC3	CMP-Neu5Ac	G65562ZE	Ser/Thr	G01614ZM	Ser/Thr	16169874
ST6GALNAC4	CMP-Neu5Ac	G65562ZE	R	G01614ZM	R	11062056
ST3GAL1	CMP-Neu5Ac	G00031MO	Thr	G65562ZE	Thr	8027041
ST6GALNAC4	CMP-Neu5Ac	G65562ZE	Ser/Thr	G01614ZM	Ser/Thr	11062056

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Gene Symbol	Donor	Acceptor	Reducing terminal(Acceptor)	Product	Reducing terminal(Product)	Reference
ST6GALNAC2	CMP-Neu5Ac	G65562ZE	Ser/Thr	G01614ZM	Ser/Thr	10536037 10742600
ST3GAL4	CMP-Neu5Ac	G00031MO	Antifreeze glycoprotein	G65562ZE	Antifreeze glycoprotein	8288606
ST6GALNAC4	CMP-Neu5Ac	G65562ZE	benzyl	G01614ZM	benzyl	11062056
ST6GALNAC1	CMP-Neu5Ac	G65562ZE	Ser/Thr	G01614ZM	Ser/Thr	10536037

Displaying **all 3** entries
Gene Symbol	Donor	Acceptor	Reducing terminal(Acceptor)	Reference
ST6GALNAC2	CMP-Neu5Ac	G65562ZE	benzyl	11062056
GAL3ST3	PAPS	G65562ZE	octyl	11323440
GAL3ST2	PAPS	G65562ZE	octyl	11323440

KEGG BRITE Database

KEGG ID

Enzyme

Reactions

Displaying **all 2** entries
KEGG Reaction	Enzyme	Acceptor	Product
R05913	2.4.3.4	G00031MO	G65562ZE
R05914	2.4.3.3 2.4.3.7	G65562ZE	G01614ZM

Core Protein

Displaying entries **11 - 20** of 39 in total

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UniProt ID	Protein Name	Reference	Source
P02724	Glycophorin-A	1421410 3305497 3514617 3624241 3967649 4091823 6190803 6619126 7430095 8384526	GlyGen GlyConnect GlyConnect GlyConnect
P02727	Glycophorin-A		GlyConnect
P02765	Alpha-2-HS-glycoprotein	1457416 6833285	GlyGen GlyConnect
P02774	Vitamin D-binding protein	6689265	GlyGen GlyConnect
P02787	Serotransferrin	9751792	GlyGen GlyConnect
P03395	Envelope glycoprotein (Fragment)	2298213	GlyConnect
P03415	Membrane protein	6325180 6331111	GlyConnect
P04278	Sex hormone-binding globulin	23001782 6684483	GlyGen GlyConnect
P04921	Glycophorin-C	3624241	GlyGen
P05059	Chromogranin-A	8910482 9115255	GlyConnect

GlycomeAtlas

Tissues in which this glycan is expressed are highlighted in yellow.

Danio rerio

Literature

Tissue

heart
intestine
liver

Reference

Yamakawa N et al. Systems glycomics of adult zebrafish identifies organ-specific sialylation and glycosylation patterns. Nat Commun. 2018;9(1):4647. Published 2018 Nov 7. doi:10.1038/s41467-018-06950-3

DOI

10.1038/s41467-018-06950-3

Localization sites organized by hierarchy by Uber-anatomy ontology (UBERON)

material anatomical entity

anatomical structure

endoderm-derived structure

liver

mesoderm-derived structure

heart

multicellular anatomical structure

organ

gland

exocrine gland

liver

endocrine gland

digestive system gland

liver

compound organ

circulatory organ

primary circulatory organ

heart

trunk region element

abdominal segment element

abdomen element

liver

thoracic segment organ

heart

digestive system element

digestive system gland

liver

organ part

subdivision of tube

subdivision of digestive tract

intestine

structure with developmental contribution from neural crest

heart

Sequence Descriptors

GlycoCT

RES
1b:a-dgal-HEX-1:5
2s:n-acetyl
3b:b-dgal-HEX-1:5
4b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d
5s:n-acetyl
LIN
1:1d(2+1)2n
2:1o(3+1)3d
3:3o(3+2)4d
4:4d(5+1)5n

WURCS

WURCS=2.0/3,3,2/[a2112h-1a_1-5_2*NCC/3=O][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O]/1-2-3/a3-b1_b3-c2

GlyTouCan

GlyComb

GlycoPOST

UniCarb-DR

LM-GlycoRepo

All Resources

Other Information

Tools

Search Tools

Summary

External Links

3D Structures

KEGG BRITE Database

Literature

Sequence Descriptors

International Collaboration

Acknowledgements