GlyCosmos Pathways

Integrated of pathway data, containing glycoproteins and glycans obtained from Reactome and the Metabolism of carbohydrates in Escherichia coli O-antigens obtained from ECODAB. Search by pathway name, species, and protein name.

Source Last Updated
Reactome March 20, 2024
ECODAB April 1, 2019
Displaying entries 376 - 400 of 1070 in total
Pathway Name Protein Name UniProt ID Gene Symbol Organism GlyTouCan ID
Astrocytic Glutamate-Glutamine Uptake And Metabolism
  • Ata1
  • Eaat1
  • Eaat2
  • Glns
  • Glnt
  • Glt1
  • Glul
  • Sa2
  • Sat1
  • Slc1a2
  • Slc1a3
  • Slc38a1
  • Snat1
Rattus norvegicus (Norway rat)
Keratan sulfate biosynthesis
  • Acan
  • Agc
  • Agc1
  • B3gnt2
  • B3gnt3
  • B3gnt4
  • B3gnt7
  • B4galt2
  • B4galt3
  • B4galt4
  • B4galt5
  • B4galt6
  • Chst1
  • Chst2
  • Chst5
  • Fmod
  • Kera
  • Lcn
  • Ldc
  • Lum
  • Omd
  • Prelp
  • Siat10
  • Siat4b
  • Siat4c
  • Siat5
  • Siat6
  • Slc35d2
  • St3gal1
  • St3gal2
  • St3gal3
  • St3gal4
  • St3gal6
Rattus norvegicus (Norway rat)
Ion transport by P-type ATPases
  • Atp10a
  • Atp10b
  • Atp10d
  • Atp11a
  • Atp11b
  • Atp11c
  • Atp12a
  • Atp13a1
  • Atp13a2
  • Atp13a4
  • Atp13a5
  • Atp1a1
  • Atp1a2
  • Atp1a3
  • Atp1a4
  • Atp1al1
  • Atp1al2
  • Atp1b1
  • Atp1b2
  • Atp1b3
  • Atp1c
  • Atp1g1
  • Atp2a1
  • Atp2a2
  • Atp2a3
  • Atp2b1
  • Atp2b3
  • Atp2b4
  • Atp2c1
  • Atp2c2
  • Atp4a
  • Atp4b
  • Atp7a
  • Atp7b
  • Atp8a1
  • Atp8a2
  • Atp8b1
  • Atp8b2
  • Atp8b3
  • Atp8b4
  • Atp9a
  • Atp9b
  • CaMIII
  • Calm3
  • Cam3
  • Camc
  • Camk2a
  • Camk2b
  • Camk2d
  • Camk2g
  • Fxyd1
  • Fxyd2
  • Fxyd3
  • Fxyd4
  • Fxyd6
  • Fxyd7
  • Hka
  • Mnk
  • Pdzd11
  • Php
  • Pina
  • Plm
  • Pln
  • Pmca3
  • Spca2
  • Sri
  • Wnd
Rattus norvegicus (Norway rat)
Signaling by LTK
  • Ack1
  • Alkal1
  • Alkal2
  • Ash
  • Fam150a
  • Grb2
  • Irs-1
  • Irs1
  • LOC100910984
  • Ltk
  • Pik3ca
  • Pik3cb
  • Pik3r1
  • Pik3r2
  • Shc1
  • Sos1
  • Tnk2
Rattus norvegicus (Norway rat)
Interferon alpha/beta signaling
  • Abce1
  • Cish3
  • ENSRNOG00000065554
  • If1ai1
  • If1ai2
  • If1ai3
  • Ifna1
  • Ifna12l
  • Ifna4
  • Ifna4l1
  • Ifnar1
  • Ifnar2
  • Ifnb
  • Ifnb1
  • Irf9
  • Jak1
  • Kpna1
  • Kpnb1
  • LOC100360645
  • LOC100911527
  • LOC120103158
  • LOC120103159
  • LOC120103160
  • LOC120103161
  • LOC120103162
  • LOC120103163
  • LOC120103164
  • RGD1560539
  • Rnasel
  • Rps27a
  • Socs1
  • Socs3
  • Stat1
  • Stat2
  • Stat4
  • Tyk2
  • Uba80
  • Ubb
  • Ubbl1
  • Ubc
  • Ubcep1
  • Ubcl1
Rattus norvegicus (Norway rat)
Activation of the AP-1 family of transcription factors
  • Atf2
  • Csbp1
  • Csbp2
  • Erk1
  • Erk2
  • Fos
  • Jnk1
  • Jnk2
  • Jnk3
  • Jun
  • Mapk
  • Mapk1
  • Mapk10
  • Mapk11
  • Mapk14
  • Mapk3
  • Mapk8
  • Mapk9
  • Prkm1
  • Prkm10
  • Prkm3
  • Prkm8
  • Prkm9
  • Rjg-9
Rattus norvegicus (Norway rat)
Glycolysis
  • Adpgk
  • Aldoa
  • Aldob
  • Aldoc
  • Bpgm
  • ENSRNOG00000066746
  • Eno-2
  • Eno-3
  • Eno2
  • Eno3
  • Eno4
  • Gapd
  • Gapd-s
  • Gapdh
  • Gapdhs
  • Gapds
  • Gck
  • Gnpda1
  • Gnpda2
  • Gpi
  • Hk1
  • Hk2
  • Hk3
  • Hkdc1
  • LOC100362738
  • Pfk-l
  • Pfk-m
  • Pfkc
  • Pfkl
  • Pfkm
  • Pfkp
  • Pgam1
  • Pgam2
  • Pgk-1
  • Pgk1
  • Pgk2
  • Pgm2l1
  • Pklr
  • Pkml1
  • RGD1563601
  • Tpi1
  • Tpi1l2
Rattus norvegicus (Norway rat)
Cargo concentration in the ER
  • Areg
  • Cd59
  • Cnih1
  • Cnih2
  • Cnih3
  • Col7a1
  • Ctsc
  • Ctsy
  • Ctsz
  • Ergic53
  • Ergl
  • F8
  • Folr1
  • GluA1
  • Glur1
  • Gosr2
  • Gria1
  • Gs27
  • Lman1
  • Lman1l
  • Lman2
  • Mcfd2
  • Mia2
  • Mia3
  • Preb
  • Rnp24
  • Sar1b
  • Sdgf
  • Sdnsf
  • Sec12
  • Sec22b
  • Sec22l1
  • Sec23a
  • Sec24a
  • Sec24b
  • Sec24c
  • Sec24d
  • Serpina1
  • Stx5
  • Stx5a
  • Tgfa
  • Tmed10
  • Tmed2
  • Tmp21
Rattus norvegicus (Norway rat)
Elastic fibre formation
  • Dance
  • Eln
  • Fbln5
  • Fbn1
  • Fur
  • Furin
  • Itga5
  • Itgav
  • Itgb1
  • Itgb3
  • Itgb6
  • Lox
  • Loxl1
  • Loxl2
  • Loxl3
  • Loxl4
  • Mfap2
  • Mfap5
  • Pcsk3
Rattus norvegicus (Norway rat)
Disinhibition of SNARE formation
  • Pkca
  • Pkcb
  • Pkcc
  • Pkcg
  • Prkca
  • Prkcb
  • Prkcb1
  • Prkcc
  • Prkcg
  • Stx4
  • Stx4a
  • Stxbp3
  • munc-18c
Rattus norvegicus (Norway rat)
Pyroptosis
  • AC128290.1
  • Bak1
  • Bax
  • Casp1
  • Casp3
  • Chmp2a
  • Chmp2b
  • Chmp3
  • Chmp4b
  • Chmp4c
  • Chmp6
  • Chmp7
  • Cpp32
  • Cycs
  • Cycsl2
  • Cycsl3
  • Elane
  • Gsdmd
  • Gsdme
  • Gzmb
  • Hmg-1
  • Hmg1
  • Hmgb1
  • Hmgb1-ps33
  • Hmgb1-ps4
  • Hmgb1l1
  • Hmgb1l2
  • Hmgb1l3
  • Hmgb1l5
  • Igif
  • Il18
  • Il1a
  • Il1b
  • Il1bc
  • Il1bce
  • LOC108349189
  • LOC108350839
  • LOC690675
  • RGD1562558
  • Vps24
Rattus norvegicus (Norway rat)
PI-3K cascade:FGFR4
  • Ash
  • FGF15
  • FGF6
  • Fgf-1
  • Fgf-2
  • Fgf-9
  • Fgf1
  • Fgf16
  • Fgf17
  • Fgf18
  • Fgf19
  • Fgf2
  • Fgf20
  • Fgf23
  • Fgf4
  • Fgf6
  • Fgf7a
  • Fgf7b
  • Fgf8
  • Fgf8a
  • Fgf9
  • Fgfa
  • Fgfr4
  • Frs2
  • Gab1
  • Grb2
  • Klb
  • Pik3ca
  • Pik3r1
  • Ptpn11
Rattus norvegicus (Norway rat)
Beta oxidation of palmitoyl-CoA to myristoyl-CoA
  • Acadvl
  • Hadha
  • Hadhb
Rattus norvegicus (Norway rat)
Glutamate Neurotransmitter Release Cycle
  • Arl6ip5
  • Ata2
  • Bnpi
  • Bzrap1
  • Cplx1
  • Eaac1
  • Eaat1
  • Eaat2
  • Eaat3
  • Eaat4
  • Ga
  • Gls
  • Gls2
  • Glt1
  • Gtrap3-18
  • Jwa
  • Ppfia1
  • Ppfia2
  • Ppfia3
  • Ppfia4
  • Pra2
  • Praf3
  • Rab3a
  • Rbp1
  • Rim1
  • Rims1
  • Sa1
  • Sap
  • Sat2
  • Slc17a7
  • Slc1a1
  • Slc1a2
  • Slc1a3
  • Slc1a6
  • Slc1a7
  • Slc38a2
  • Snap
  • Snap25
  • Snat2
  • Stx1a
  • Stxbp1
  • Syb2
  • Syt1
  • Tspoap1
  • Unc13b
  • Unc13h2
  • Unc18a
  • Vamp2
  • Vglut1
Rattus norvegicus (Norway rat)
RAF-independent MAPK1/3 activation
  • Cl100
  • Dusp1
  • Dusp10
  • Dusp16
  • Dusp4
  • Dusp5
  • Dusp6
  • Dusp7
  • Dusp8
  • Dusp9
  • ENSRNOG00000069024
  • Erk1
  • Erk2
  • Mapk
  • Mapk1
  • Mapk3
  • Mkp1
  • Mkp2
  • Mkp3
  • Mkpx
  • Pea15
  • Prkm1
  • Prkm3
  • Ptpn16
Rattus norvegicus (Norway rat)
Succinyl-CoA Biosynthesis
  • AC132020.1
  • Dld
  • Dlst
  • Kgd4
  • Mrps36
  • Ogdh
  • Ogdhl
Rattus norvegicus (Norway rat)
GRB7 events in ERBB2 signaling
  • Erbb2
  • Erbb3
  • Grb7
  • Ndf
  • Neu
  • Nrg1
  • Nrg2
  • Ntak
Rattus norvegicus (Norway rat)
Linoleic acid (LA) metabolism
  • Abcd1
  • Acs1
  • Acsl1
  • Acsl2
  • ELOVL1
  • ELOVL3
  • Elovl1
  • Elovl2
  • Elovl3
  • Elovl5
  • Facl2
  • Fads1
  • Fads2
  • Fadsd6
  • Ssc2
Rattus norvegicus (Norway rat)
Calnexin/calreticulin cycle
  • Calr
  • Canx
  • Erp60
  • Grp58
  • Pdia3
Rattus norvegicus (Norway rat)
Regulation of pyruvate metabolism
  • Armc8
  • Gid4
  • Gid8
  • LOC100360645
  • LOC100362738
  • Ldh-1
  • Ldh1
  • Ldha
  • Maea
  • Me1
  • Mkln1
  • Mod-1
  • Mod1
  • Msk
  • Nek1
  • Pgam5
  • Pkml1
  • Ranbp9
  • Rmnd5a
  • Rmnd5b
  • Rps27a
  • Uba80
  • Ubb
  • Ubbl1
  • Ubc
  • Ubcep1
  • Ubcl1
  • Wdr26
Rattus norvegicus (Norway rat)
Free fatty acid receptors
  • Ffar1
  • Ffar2
  • Ffar3
  • Gpr40
  • Gpr41
  • Gpr43
Rattus norvegicus (Norway rat)
HSF1 activation
  • Eef1a
  • Eef1a1
  • Hsf1
  • Hsp84
  • Hsp86
  • Hsp90aa1
  • Hsp90ab1
  • Hspc3
  • Hspca
  • Hspcb
  • Ptges3
  • Tebp
  • Vcp
  • Ywhae
Rattus norvegicus (Norway rat)
LRR FLII-interacting protein 1 (LRRFIP1) activates type I IFN production
  • Catnb
  • Cbp
  • Crebbp
  • Ctnnb1
  • Ep300
  • Irf3
Rattus norvegicus (Norway rat)
Integrin cell surface interactions
  • 2b7
  • Bsg
  • Cd44
  • Cd47
  • Cdh1
  • Col13a1
  • Col16a1
  • Col18a1
  • Col4a1
  • Col4a2
  • Col4a3
  • Col4a4
  • Comp
  • F11r
  • Fbn1
  • Fga
  • Fgb
  • Fgg
  • Fn1
  • ITGA3B
  • Ibsp
  • Icam-1
  • Icam1
  • Icam2
  • Icam4
  • Icam5
  • Itga1
  • Itga10
  • Itga11
  • Itga2
  • Itga2b
  • Itga3
  • Itga4
  • Itga5
  • Itga6
  • Itga8
  • Itga9
  • Itgad
  • Itgae
  • Itgal
  • Itgav
  • Itgax
  • Itgb1
  • Itgb2
  • Itgb3
  • Itgb5
  • Itgb6
  • Itgb7
  • Itgb8
  • Jam1
  • Jam2
  • Jam3
  • LOC100911572
  • Lcn
  • Ldc
  • Lum
  • Madcam1
  • Pecam
  • Pecam1
  • Spp-1
  • Spp1
  • Thbs1
  • Tnc
  • Vcam-1
  • Vcam1
  • Vtn
Rattus norvegicus (Norway rat)
COPI-independent Golgi-to-ER retrograde traffic
  • AABR07000222.1
  • Actr10
  • Actr1a
  • Agpat3
  • Bicd1
  • Bicd2
  • Capza1
  • Capza2
  • Capza3
  • Capzb
  • Cpla2
  • Ctrn1
  • Dctn1
  • Dctn2
  • Dctn3l1
  • Dctn4
  • Dctn5
  • Dctn6
  • Dhc1
  • Dlc2
  • Dnch1
  • Dnchc1
  • Dnci1
  • Dnci2
  • Dncic1
  • Dncic2
  • Dncl1
  • Dnclc1
  • Dncli1
  • Dncli2
  • Dnec1
  • Dyhc
  • Dync1h1
  • Dync1i1
  • Dync1i2
  • Dync1li1
  • Dync1li2
  • Dynll1
  • Dynll2
  • Galnt1
  • Galnt2
  • Lis-1
  • Lis1
  • Map1c
  • Pafah1b1
  • Pafah1b2
  • Pafah1b3
  • Pafaha
  • Pafahb
  • Pafahg
  • Pin
  • Pla2g4
  • Pla2g4a
  • Pla2g6
  • Pnpla9
  • Rab18
  • Rab3gap
  • Rab3gap1
  • Rab3gap2
  • Rab6
  • Rab6a
  • Rab6b
Rattus norvegicus (Norway rat)

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GlyCosmos is a member of the GlySpace Alliance together with GlyGen and Glycomics@ExPASy.

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Supported by JST NBDC Grant Number JPMJND2204

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Last updated: August 19, 2024