GlyCosmos Pathways

Integrated of pathway data, containing glycoproteins and glycans obtained from Reactome and the Metabolism of carbohydrates in Escherichia coli O-antigens obtained from ECODAB. Search by pathway name, species, and protein name.

Source Last Updated
Reactome March 20, 2024
ECODAB April 1, 2019
Displaying entries 501 - 525 of 1070 in total
Pathway Name Protein Name UniProt ID Gene Symbol ▲ Organism GlyTouCan ID
Urea cycle
  • Arg1
  • Arg2
  • Asl
  • Cps1
  • Nags
  • Otc
  • Slc25a15
  • Slc25a2
Rattus norvegicus (Norway rat)
Neurexins and neuroligins
  • Argbp2
  • Cask
  • Dap2
  • Dap3
  • Dap4
  • Dlg2
  • Dlg3
  • Dlg4
  • Dlgap1
  • Dlgap2
  • Dlgap3
  • Dlgap4
  • Dlgh2
  • Dlgh3
  • Dlgh4
  • Epb4.1l1
  • Epb4.1l5
  • Epb41
  • Epb41l1
  • Epb41l2
  • Epb41l5
  • Gkap
  • Gprc1a
  • Gprc1e
  • Grm1
  • Grm5
  • Homer
  • Homer1
  • Homer2
  • Homer3
  • Lrrtm1
  • Lrrtm2
  • Lrrtm3
  • Lrrtm4
  • Mglur1
  • Mglur5
  • Nlgn1
  • Nlgn2
  • Nlgn3
  • Nrxn1
  • Nrxn2
  • Nrxn3
  • Prosap2
  • Psd95
  • Sapap4
  • Shank1
  • Shank3
  • Sorbs2
  • Vesl
  • Vesl2
  • Vesl3
Rattus norvegicus (Norway rat)
Vitamin D (calciferol) metabolism
  • Arh
  • Cubn
  • Cyp24
  • Cyp24a1
  • Cyp27b
  • Cyp27b1
  • Cyp2r1
  • Dbp
  • Gc
  • Ifcr
  • Ldlrap1
  • Lgmn
  • Lrp2
  • Nr1i1
  • Pias4
  • Prsc1
  • Smt3a
  • Smt3h2
  • Sumo2
  • Ubce9
  • Ube2i
  • Vdr
Rattus norvegicus (Norway rat)
Sema4D induced cell migration and growth-cone collapse
  • Arha
  • Arha2
  • Arhb
  • Arhgef11
  • Arhgef12
  • Erbb2
  • Neu
  • Plxnb1
  • Rhoa
  • Rhob
  • Rnd1
  • Rock1
  • Rock2
  • Sema4d
Rattus norvegicus (Norway rat)
RHO GTPases activate PKNs
  • Arha
  • Arha2
  • Arhb
  • Cdc25c
  • Cpi
  • Cpi17
  • Mbs
  • Msfs1
  • Mypt1
  • Pak2
  • Pdk1
  • Pdpk1
  • Pkn
  • Pkn1
  • Pkn2
  • Ppp1cb
  • Ppp1r12a
  • Ppp1r12b
  • Ppp1r14a
  • Prk1
  • Prk2
  • Prkcl1
  • Prkcl2
  • Rac
  • Rac1
  • Rhoa
  • Rhob
  • Sfn
  • Ywhab
  • Ywhae
  • Ywhag
  • Ywhah
  • Ywhaq
  • Ywhaz
Rattus norvegicus (Norway rat)
GPVI-mediated activation cascade
  • Arha
  • Arha2
  • Arhb
  • Cdc42
  • Clec1b
  • Fce1g
  • Fcer1g
  • Fyn
  • G6b
  • Gp6
  • Lat
  • Lck
  • Lcp2
  • Lyn
  • Mpig6b
  • Pdk1
  • Pdpk1
  • Pdpn
  • Pik3ca
  • Pik3cb
  • Pik3cg
  • Pik3r1
  • Pik3r2
  • Pik3r3
  • Pik3r5
  • Pik3r6
  • Plcg2
  • Ptph6
  • Ptpn11
  • Ptpn6
  • Rac
  • Rac1
  • Rac2
  • Rhoa
  • Rhob
  • Rhog
  • Syk
  • Vav
  • Vav1
  • Vav2
  • Vav3
Rattus norvegicus (Norway rat)
PTK6 Regulates RHO GTPases, RAS GTPase and MAP kinases
  • Arha
  • Arha2
  • Arhgap35
  • Bcar1
  • Cas
  • Crk
  • Crkas
  • Crko
  • Elmo1
  • Elmo2
  • Grlf1
  • Hras
  • Hras1
  • Kras
  • Kras2
  • Nras
  • P190A
  • Ptk6
  • Pxn
  • Rac
  • Rac1
  • Rasa
  • Rasa1
  • Rhoa
  • p190ARHOGAP
Rattus norvegicus (Norway rat)
Sema4D mediated inhibition of cell attachment and migration
  • Arha
  • Arha2
  • Arhgap35
  • Grlf1
  • Met
  • P190A
  • Plxnb1
  • Rac
  • Rac1
  • Rhoa
  • Rnd1
  • Rras
  • Sema4d
  • p190ARHOGAP
Rattus norvegicus (Norway rat)
Axonal growth inhibition (RHOA activation)
  • Arha
  • Arha2
  • Arhgdia
  • Lingo1
  • Mag
  • Mcf2
  • Ngfr
  • Nogo
  • Omg
  • Rhoa
  • Rtn4
  • Tnfrsf16
Rattus norvegicus (Norway rat)
Axonal growth stimulation
  • Arha
  • Arha2
  • Arhgdia
  • Ngf
  • Ngfb
  • Ngfr
  • Rhoa
  • Tnfrsf16
Rattus norvegicus (Norway rat)
ERBB2 Regulates Cell Motility
  • Arha
  • Arha2
  • Btc
  • Diap1
  • Diaph1
  • Dtr
  • Egf
  • Egfr
  • Erbb2
  • Erbb3
  • Ereg
  • Hbegf
  • Hegfl
  • Memo1
  • Ndf
  • Neu
  • Nrg1
  • Nrg2
  • Nrg3
  • Ntak
  • Rhoa
Rattus norvegicus (Norway rat)
TGF-beta receptor signaling in EMT (epithelial to mesenchymal transition)
  • Arha
  • Arha2
  • Cgn
  • F11r
  • Jam1
  • LOC100360645
  • Par-6a
  • Par3
  • Par6a
  • Pard3
  • Pard6a
  • Pkcz
  • Prkcz
  • Rhoa
  • Rps27a
  • Smurf1
  • Tgfb1
  • Tgfbr1
  • Tgfbr2
  • Uba80
  • Ubb
  • Ubbl1
  • Ubc
  • Ubcep1
  • Ubcl1
Rattus norvegicus (Norway rat)
PCP/CE pathway
  • Arha
  • Arha2
  • Daam1
  • Dvl1
  • Dvl2
  • Dvl3
  • Fzd1
  • Fzd3
  • Fzd6
  • Fzd7
  • LOC100361515
  • Pfn1
  • Rac
  • Rac1
  • Rac2
  • Rhoa
  • Wnt-4
  • Wnt-5a
  • Wnt1
  • Wnt11
  • Wnt4
  • Wnt5a
  • Wnt5b
Rattus norvegicus (Norway rat)
PI3K/AKT activation
  • Arha
  • Arha2
  • Irs-1
  • Irs1
  • Irs2
  • Ngf
  • Ngfb
  • Ntrk1
  • Pik3ca
  • Pik3cb
  • Pik3r1
  • Pik3r2
  • Rhoa
  • Trk
  • Trka
Rattus norvegicus (Norway rat)
RHOJ GTPase cycle
  • Arhgap1
  • Arhgap21
  • Arhgap26
  • Arhgap32
  • Arhgap35
  • Arhgap5
  • Depdc1b
  • Dock8
  • Grlf1
  • Ocrl
  • Ophn1
  • P190A
  • Pik3r1
  • Pik3r2
  • Prex1
  • Rhoj
  • Syde1
  • Trio
  • p190ARHOGAP
Rattus norvegicus (Norway rat)
RHOV GTPase cycle
  • Arhgap12
  • Arhgef7
  • Ccp110
  • Cdc42
  • Cep97
  • Cltc
  • Depdc1b
  • Dlg5
  • Dst
  • Epha2
  • Git1
  • Git2
  • Iqgap1
  • Map3k11
  • Mlk3
  • Myo9a
  • Myr7
  • Nck1
  • Nck2
  • Pak1
  • Pak2
  • Pak3bp
  • Pak4
  • Pak6
  • Par-6a
  • Par6a
  • Pard6a
  • Pard6b
  • Peak1
  • Pik3r1
  • Pixb
  • Posh
  • Posh1
  • RGD1312026
  • Rhov
  • Sh3md2
  • Sh3rf1
  • Spna2
  • Spta2
  • Sptan1
  • Sptbn1
  • Tpm4
  • Trp
  • Txnl1
  • Vangl1
  • Wdr6
  • Zfp512b
Rattus norvegicus (Norway rat)
RHOU GTPase cycle
  • Arhgap30
  • Arhgap31
  • Arhgef6
  • Arhgef7
  • Ash
  • Cdc42
  • Cltc
  • Depdc1b
  • Dlg5
  • Dst
  • Epha2
  • Fak2
  • Git1
  • Git2
  • Grb2
  • Hgs
  • Hrs
  • Hrs2
  • Iqgap1
  • Itsn2
  • Myo6
  • Nck1
  • Nck2
  • Pak1
  • Pak2
  • Pak3
  • Pak3bp
  • Pak4
  • Par-6a
  • Par6a
  • Pard6a
  • Peak1
  • Pik3r1
  • Pik3r2
  • Pixb
  • Ptk2b
  • Pyk2
  • RGD1312026
  • Rhou
  • Spna2
  • Spta2
  • Sptan1
  • Sptbn1
  • Srgap2
  • Stam
  • Stam2
  • Trp
  • Txnl1
  • Vangl1
  • Wdr6
  • Wwp2
Rattus norvegicus (Norway rat)
RHOH GTPase cycle
  • Arhgdia
  • Arhgdib
  • Arhgdig
  • Cav
  • Cav1
  • Csk
  • Dbt
  • Fam91a1
  • Garnl1
  • Gbas
  • Jup
  • LOC498174
  • Lamtor1
  • Lck
  • Mtr
  • Nbc
  • Nbc2
  • Nbc3
  • Nbcn1
  • Nipsnap2
  • Nsfl1c
  • Pak1
  • Pak2
  • Pak4
  • Pak5
  • Pak6
  • Pak7
  • Pg
  • RGD1310313
  • Rab7
  • Rab7a
  • Ralgapa1
  • Rhoh
  • Rock1
  • Rock2
  • Slc1a5
  • Slc4a7
  • Stom
  • Syb3
  • Tfrc
  • Tmem59
  • Trfr
  • Tuba1b
  • Tuba2
  • Tulip1
  • Uaca
  • Vamp3
  • Vangl1
  • Vcp
  • Wdr11
  • Zap70
Rattus norvegicus (Norway rat)
G beta:gamma signalling through CDC42
  • Arhgef6
  • Cdc42
  • Gnb1
  • Gnb2
  • Gnb3
  • Gnb4
  • Gnb5
  • Gng10-ps1
  • Gng11
  • Gng12
  • Gng3
  • Gng4
  • Gng5
  • Gng5-ps4
  • Gng7
  • Gng8
  • Gng9
  • Gngt1
  • Gngt11
  • Gngt5
  • Gngt7
  • Gngt9
  • Pak1
Rattus norvegicus (Norway rat)
Ephrin signaling
  • Arhgef7
  • Efnb1
  • Efnb3
  • Elk
  • Ephb1
  • Ephb2
  • Ephb3
  • Ephb4
  • Ephb6
  • Eplg2
  • Epth2
  • Fyn
  • Git1
  • LOC686310
  • Lerk2
  • Nck2
  • Pak1
  • Pak2
  • Pak3
  • Pak3bp
  • Pixb
  • Rac
  • Rac1
  • Rlc-a
  • Sdcbp
  • Src
Rattus norvegicus (Norway rat)
GABA receptor activation
  • Arhgef9
  • Gabra-1
  • Gabra-2
  • Gabra-3
  • Gabra-5
  • Gabra-6
  • Gabra1
  • Gabra2
  • Gabra3
  • Gabra4
  • Gabra5
  • Gabra6
  • Gabrb-1
  • Gabrb-2
  • Gabrb-3
  • Gabrb1
  • Gabrb2
  • Gabrb3
  • Gabrg2
  • Gabrg3
  • Gabrq
  • Gabrr1
  • Gabrr2
  • Gabrr3
Rattus norvegicus (Norway rat)
HDMs demethylate histones
  • Arid5b
  • H3c13
  • H4c16
  • H4c2
  • H4f16
  • H4ft
  • Hist1h4b
  • Hist1h4m
  • Hist2h3c2
  • Hist4
  • Hist4h4
  • Jhdm2a
  • Jhdm3d
  • Jmjd1a
  • Jmjd2d
  • Jmjd6
  • Kdm1a
  • Kdm1b
  • Kdm2a
  • Kdm2b
  • Kdm3a
  • Kdm3b
  • Kdm4a
  • Kdm4b
  • Kdm4c
  • Kdm4d
  • Kdm5a
  • Kdm5b
  • Kdm5c
  • Kdm5d
  • Kdm6a
  • Kdm6b
  • Kdm7a
  • Mina
  • Mina53
  • Phf2
  • Phf8
  • Ptdsr
  • Riox2
  • Tsga
  • Uty
Rattus norvegicus (Norway rat)
ISG15 antiviral mechanism
  • Arih1
  • Becn1
  • Ddx48
  • Eif2ak2
  • Eif4a1
  • Eif4a2
  • Eif4a3
  • Eif4e
  • Eif4g1
  • Eif4g2
  • Eif4g3
  • Erk1
  • Flnb
  • Ifit1bl
  • Irf3
  • Isg15
  • Jak1
  • LOC100366017
  • Mapk3
  • Mx2
  • Nedd4
  • Nedd4a
  • Plcg1
  • Pp2c2
  • Ppm1b
  • Pppm1b
  • Prkm3
  • Prkr
  • Rig1
  • Rpf1
  • Stat1
  • Stat4
  • Trim25
  • Uba7
  • Ube2e1
  • Ube2l6
  • Usp18
Rattus norvegicus (Norway rat)
BBSome-mediated cargo-targeting to cilium
  • Arl6
  • Bbs1
  • Bbs2
  • Bbs4
  • Bbs7
  • Bbs9
  • Gpr24
  • Lztfl1
  • Mchr1
  • Rab3ip
  • Rabin3
  • Rabin8
  • Slc1
  • Smo
  • Smoh
  • Sstr3
  • Ttc8
Rattus norvegicus (Norway rat)
Glutamate Neurotransmitter Release Cycle
  • Arl6ip5
  • Ata2
  • Bnpi
  • Bzrap1
  • Cplx1
  • Eaac1
  • Eaat1
  • Eaat2
  • Eaat3
  • Eaat4
  • Ga
  • Gls
  • Gls2
  • Glt1
  • Gtrap3-18
  • Jwa
  • Ppfia1
  • Ppfia2
  • Ppfia3
  • Ppfia4
  • Pra2
  • Praf3
  • Rab3a
  • Rbp1
  • Rim1
  • Rims1
  • Sa1
  • Sap
  • Sat2
  • Slc17a7
  • Slc1a1
  • Slc1a2
  • Slc1a3
  • Slc1a6
  • Slc1a7
  • Slc38a2
  • Snap
  • Snap25
  • Snat2
  • Stx1a
  • Stxbp1
  • Syb2
  • Syt1
  • Tspoap1
  • Unc13b
  • Unc13h2
  • Unc18a
  • Vamp2
  • Vglut1
Rattus norvegicus (Norway rat)

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GlyCosmos is a member of the GlySpace Alliance together with GlyGen and Glycomics@ExPASy.

Acknowledgements

Supported by JST NBDC Grant Number JPMJND2204

Partly supported by NIH Common Fund Grant #1U01GM125267-01


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Last updated: August 19, 2024