GlyCosmos Pathways

Integrated of pathway data, containing glycoproteins and glycans obtained from Reactome and the Metabolism of carbohydrates in Escherichia coli O-antigens obtained from ECODAB. Search by pathway name, species, and protein name.

Source Last Updated
Reactome March 20, 2024
ECODAB April 1, 2019
Displaying entries 626 - 650 of 1070 in total
Pathway Name Protein Name ▲ UniProt ID Gene Symbol Organism GlyTouCan ID
RHOBTB1 GTPase cycle
  • Cct2
  • Cct7
  • Cctb
  • Cops1
  • Cops2
  • Cops4
  • Cpsf7
  • Csn1
  • Csn2
  • Csn4
  • Cul3
  • Gps1
  • Hnrnpc
  • Hnrpc
  • LOC100365546
  • Myo6
  • Pde5
  • Pde5a
  • Rbbp6
  • Rbmx
  • Rbmxrt
  • Rhobtb1
  • Rnf20
  • Rock1
  • Rock2
  • Sfrs10
  • Spen
  • Srrm1
  • Stk38
  • Tra2b
  • Trip15
  • Trp
  • Txnl1
  • Vim
Rattus norvegicus (Norway rat)
CREB3 factors activate genes
  • Creb3
  • Creb3l3
  • Crebrf
  • Mbtps1
  • S1p
  • Ski1
Rattus norvegicus (Norway rat)
Depolymerization of the Nuclear Lamina
  • Ccnb1
  • Cdc2
  • Cdc2a
  • Cdk1
  • Cdkn1
  • Cnep1r1
  • Ctdnep1
  • Dullard
  • Emd
  • Lmn1
  • Lmna
  • Lmnb1
  • Lpin1
  • Lpin2
  • Lpin3
  • Pkca
  • Pkcb
  • Prkca
  • Prkcb
  • Prkcb1
  • Rbm39
  • Tmem188
Rattus norvegicus (Norway rat)
Apoptotic cleavage of cell adhesion proteins
  • Casp3
  • Catnb
  • Cdh1
  • Cpp32
  • Ctnnb1
  • Dsg1
  • Dsg2
  • Dsg3
  • Dsp
  • Ocln
  • Pkp1
  • Tjp1
  • Tjp2
Rattus norvegicus (Norway rat)
Ca2+ pathway
  • CaMIII
  • Calm3
  • Calna
  • Cam3
  • Camc
  • Camk2a
  • Catnb
  • Cna2
  • Cnb
  • Ctnnb1
  • Fzd2
  • Fzd3
  • Fzd4
  • Fzd5
  • Fzd6
  • Gna0
  • Gnao
  • Gnao1
  • Gnat2
  • Gnb1
  • Gnb2
  • Gnb3
  • Gnb4
  • Gnb5
  • Gng10-ps1
  • Gng11
  • Gng12
  • Gng3
  • Gng4
  • Gng5
  • Gng5-ps4
  • Gng7
  • Gng8
  • Gng9
  • Gngt1
  • Gngt11
  • Gngt5
  • Gngt7
  • Gngt9
  • Kras
  • Kras2
  • Lef1
  • Map3k7
  • Nfatc1
  • Nlk
  • Pde6a
  • Pde6b
  • Pde6g
  • Ppp3ca
  • Ppp3cb
  • Ppp3r1
  • RGD1560225
  • Tcf7l2
  • Wnt-5a
  • Wnt11
  • Wnt5a
Rattus norvegicus (Norway rat)
Calcineurin activates NFAT
  • CaMIII
  • Calm3
  • Calna
  • Cam3
  • Camc
  • Cna2
  • Cnb
  • Fkbp1
  • Fkbp1a
  • Nfat4
  • Nfatc1
  • Nfatc2
  • Nfatc3
  • Ppp3ca
  • Ppp3cb
  • Ppp3r1
  • RGD1560225
Rattus norvegicus (Norway rat)
CLEC7A (Dectin-1) induces NFAT activation
  • CaMIII
  • Calm3
  • Calna
  • Cam3
  • Camc
  • Cna2
  • Cnb
  • Nfat4
  • Nfatc1
  • Nfatc2
  • Nfatc3
  • Ppp3ca
  • Ppp3cb
  • Ppp3r1
  • RGD1560225
Rattus norvegicus (Norway rat)
Calcitonin-like ligand receptors
  • Adm
  • Adm2
  • Am2
  • Calc
  • Calca
  • Calcb
  • Calcr
  • Calcrl
  • Cgrpr
  • Iapp
  • Ramp1
  • Ramp2
  • Ramp3
Rattus norvegicus (Norway rat)
Mitochondrial calcium ion transport
  • Cbara1
  • Efha1
  • Mcu
  • Mcub
  • Micu1
  • Micu2
  • Micu3
  • Nckx6
  • Nclx
  • Slc24a6
  • Slc8b1
  • Smdt1
  • Smhs2
Rattus norvegicus (Norway rat)
Ca activated K+ channels
  • Ik1
  • Kcnma
  • Kcnma1
  • Kcnmb1
  • Kcnmb2
  • Kcnmb3
  • Kcnmb4
  • Kcnn1
  • Kcnn2
  • Kcnn3
  • Kcnn4
  • Sk1
  • Sk4
  • Smik
Rattus norvegicus (Norway rat)
Activation of RAC1 downstream of NMDARs
  • CaMIII
  • Calm3
  • Cam3
  • Camc
  • Camk1
  • Camkk1
  • Camkk2
Rattus norvegicus (Norway rat)
CaMK IV-mediated phosphorylation of CREB
  • CaMIII
  • Calm3
  • Cam3
  • Camc
  • Camk4
  • Camkk1
  • Camkk2
Rattus norvegicus (Norway rat)
CREB1 phosphorylation through the activation of CaMKII/CaMKK/CaMKIV cascasde
  • CaMIII
  • Calm3
  • Cam3
  • Camc
  • Camk4
  • Camkk1
  • Camkk2
Rattus norvegicus (Norway rat)
Interferon gamma signaling
  • Camk2a
  • Camk2b
  • Camk2d
  • Camk2g
  • Cish3
  • Erk1
  • Erk2
  • Ifng
  • Ifngr1
  • Ifngr2
  • Jak1
  • Jak2
  • Mapk
  • Mapk1
  • Mapk3
  • Pkcd
  • Prkcd
  • Prkm1
  • Prkm3
  • Ptph6
  • Ptpn6
  • Socs1
  • Socs3
  • Stat1
  • Stat4
  • Yb1
  • Ybx1
Rattus norvegicus (Norway rat)
Inactivation, recovery and regulation of the phototransduction cascade
  • CNCG2
  • CNCG3L
  • CNCG4
  • CaMIII
  • Calm3
  • Cam3
  • Camc
  • Camkmt
  • Clnmt
  • Cncg
  • Cncg1
  • Cnga1
  • Cngb1
  • Fnta
  • Fntb
  • Gnat1
  • Gnb5
  • Gngt1
  • Gprk2l
  • Grk1
  • Grk4
  • Guc2e
  • Guc2f
  • Guca1a
  • Guca1b
  • Gucy2d
  • Gucy2e
  • Gucy2f
  • Metap1
  • Metap2
  • Mnpep
  • Nmt1
  • Nmt2
  • P67eif2
  • Pde6a
  • Pde6b
  • Pde6g
  • Ppef1
  • RCNC2
  • Rcvrn
  • Rgs9
  • Rgs9bp
  • Rho
  • Rhok
  • Sag
Rattus norvegicus (Norway rat)
Protein methylation
  • AABR07029195.1
  • CaMIII
  • Calm3
  • Cam3
  • Camc
  • Camkmt
  • Clnmt
  • EEF1AKMT1
  • Eef1a
  • Eef1a1
  • Eef1akmt1
  • Eef2
  • Eef2kmt
  • Etfb
  • Etfbkmt
  • Fam86a
  • Hrmt1l3
  • Hsc70
  • Hsc73
  • Hspa8
  • Kin
  • LOC102553119
  • Mettl20
  • Mettl21a
  • Mettl22
  • N6AMT2
  • Prmt3
  • Rps2
Rattus norvegicus (Norway rat)
RHO GTPases activate PAKs
  • CaMIII
  • Calm3
  • Cam3
  • Camc
  • Cdc42
  • Flna
  • LOC685883
  • Limk
  • Limk1
  • Mbs
  • Mrlc2
  • Mrlcb
  • Myh10
  • Myh14
  • Myh9
  • Myl12b
  • Myl6
  • Myl9
  • Mylc2b
  • Mylk
  • Mypt1
  • Myrl2
  • Nf2
  • Pak1
  • Pak2
  • Pak3
  • Ppp1cb
  • Ppp1r12a
  • Ppp1r12b
  • Rac
  • Rac1
Rattus norvegicus (Norway rat)
Activation of Ca-permeable Kainate Receptor
  • CaMIII
  • Calm3
  • Cam3
  • Camc
  • Dlg1
  • Dlg3
  • Dlg4
  • Dlgh1
  • Dlgh3
  • Dlgh4
  • Glur5
  • Glur6
  • Glur7
  • Grik1
  • Grik2
  • Grik3
  • Grik4
  • Grik5
  • Ncald
  • Psd95
Rattus norvegicus (Norway rat)
Glycogen breakdown (glycogenolysis)
  • AABR07037995.1
  • Agl
  • CaMIII
  • Calm3
  • Cam3
  • Camc
  • Gaa
  • Gyg
  • Gyg1
  • Lgp
  • Pgm1
  • Phka1
  • Phka2
  • Phkb
  • Phkg
  • Phkg1
  • Phkg2
  • Pygl
  • Pygm
Rattus norvegicus (Norway rat)
Sodium/Calcium exchangers
  • CaMIII
  • Calm3
  • Cam3
  • Camc
  • Nckx1
  • Nckx2
  • Nckx3
  • Nckx6
  • Nclx
  • Ncx1
  • Ncx2
  • Ncx3
  • Slc24a1
  • Slc24a2
  • Slc24a3
  • Slc24a4
  • Slc24a5
  • Slc24a6
  • Slc8a1
  • Slc8a2
  • Slc8a3
  • Slc8b1
  • Sri
Rattus norvegicus (Norway rat)
Reduction of cytosolic Ca++ levels
  • Atp2a1
  • Atp2a2
  • Atp2a3
  • Atp2b1
  • Atp2b3
  • Atp2b4
  • CaMIII
  • Calm3
  • Cam3
  • Camc
  • Ncx1
  • Ncx2
  • Ncx3
  • Pmca3
  • Slc8a1
  • Slc8a2
  • Slc8a3
  • Sri
Rattus norvegicus (Norway rat)
Calnexin/calreticulin cycle
  • Calr
  • Canx
  • Erp60
  • Grp58
  • Pdia3
Rattus norvegicus (Norway rat)
Interleukin-27 signaling
  • Canx
  • Crlf1
  • Ebi3
  • Il27
  • Il6st
  • Jak1
  • Jak2
  • Stat1
  • Stat3
  • Stat4
  • Tyk2
Rattus norvegicus (Norway rat)
Interleukin-35 Signalling
  • Canx
  • Ebi3
  • Il12a
  • Il12rb2
  • Il6st
  • Jak1
  • Jak2
  • Stat1
  • Stat3
  • Stat4
  • Tyk2
Rattus norvegicus (Norway rat)
Trafficking and processing of endosomal TLR
  • Cnpy3
  • Cts7l2
  • Ctsb
  • Ctsk
  • Ctsl
  • Ctsl1
  • Ctsll3
  • Ctss
  • Grp94
  • Hsp90b1
  • Hspc4
  • Lgmn
  • Prsc1
  • RGD1308751
  • Tlr7
  • Tlr8
  • Tlr9
  • Tra1
  • Unc93b1
Rattus norvegicus (Norway rat)

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GlyCosmos is a member of the GlySpace Alliance together with GlyGen and Glycomics@ExPASy.

Acknowledgements

Supported by JST NBDC Grant Number JPMJND2204

Partly supported by NIH Common Fund Grant #1U01GM125267-01


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Last updated: August 19, 2024