GlyCosmos Pathways

Integrated of pathway data, containing glycoproteins and glycans obtained from Reactome and the Metabolism of carbohydrates in Escherichia coli O-antigens obtained from ECODAB. Search by pathway name, species, and protein name.

Source Last Updated
Reactome March 20, 2024
ECODAB April 1, 2019
Displaying entries 626 - 650 of 1070 in total
Pathway Name Protein Name UniProt ID ▼ Gene Symbol Organism GlyTouCan ID
Receptor-type tyrosine-protein phosphatases
  • Il1rap
  • Il1rapl1
  • Il1rapl2
  • Lar
  • Lrig4
  • Lrrc4b
  • Ntrk3
  • Ppfia1
  • Ppfia2
  • Ppfia3
  • Ppfia4
  • Ppfibp1
  • Ppfibp2
  • Ptprd
  • Ptprf
  • Ptprs
  • Slitrk1
  • Slitrk2
  • Slitrk3
  • Slitrk4
  • Slitrk5
  • Slitrk6
  • Trkc
Rattus norvegicus (Norway rat)
Linoleic acid (LA) metabolism
  • Abcd1
  • Acs1
  • Acsl1
  • Acsl2
  • ELOVL1
  • ELOVL3
  • Elovl1
  • Elovl2
  • Elovl3
  • Elovl5
  • Facl2
  • Fads1
  • Fads2
  • Fadsd6
  • Ssc2
Rattus norvegicus (Norway rat)
alpha-linolenic acid (ALA) metabolism
  • Abcd1
  • Acaa1
  • Acaa1b
  • Acot8
  • Acox
  • Acox1
  • Acs1
  • Acsl1
  • Acsl2
  • ELOVL1
  • ELOVL3
  • Edh17b4
  • Elovl1
  • Elovl2
  • Elovl3
  • Elovl5
  • Facl2
  • Fads1
  • Fads2
  • Fadsd6
  • Hsd17b4
  • Pte1
  • Scp-2
  • Scp2
  • Ssc2
Rattus norvegicus (Norway rat)
Synthesis of very long-chain fatty acyl-CoAs
  • Acs1
  • Acs2
  • Acs3
  • Acs4
  • Acs5
  • Acsbg1
  • Acsbg2
  • Acsf3
  • Acsl1
  • Acsl2
  • Acsl3
  • Acsl4
  • Acsl5
  • Acsl6
  • ELOVL1
  • ELOVL3
  • Edh17b3
  • Elovl1
  • Elovl2
  • Elovl3
  • Elovl5
  • Elovl6
  • Elovl7
  • Face
  • Facl2
  • Facl3
  • Facl4
  • Facl5
  • Facl6
  • Gpsn2
  • Grlacs
  • Hacd1
  • Hacd3
  • Hacd4
  • Hsd17b12
  • Hsd17b3
  • LOC100365676
  • Lce
  • Ssc2
  • Tecr
  • Tecrl
Rattus norvegicus (Norway rat)
Carnitine metabolism
  • Cact
  • Cpt-1
  • Cpt-2
  • Cpt1
  • Cpt1a
  • Cpt1b
  • Cpt2
  • Mid1ip1
  • Mig12
  • Nr2b1
  • Octn2
  • Prkab2
  • Prkag2
  • Rxra
  • S14
  • Slc22a5
  • Slc25a20
  • Thrsp
Rattus norvegicus (Norway rat)
Mineralocorticoid biosynthesis
  • Cga
  • Cga1
  • Cyp11b-2
  • Cyp11b2
  • Cyp21
  • Cyp21a1
  • Hsd3b
  • Hsd3b1
  • Hsd3b5
  • Hsd3b5-ps1
  • Hsd3b6
  • Lhb
Rattus norvegicus (Norway rat)
Glucocorticoid biosynthesis
  • Cbg
  • Cyp11b-1
  • Cyp11b-2
  • Cyp11b-3
  • Cyp11b1
  • Cyp11b2
  • Cyp11b3
  • Cyp17
  • Cyp17a1
  • Cyp21
  • Cyp21a1
  • Hsd11
  • Hsd11b1
  • Hsd11b2
  • Hsd11k
  • Hsd3b
  • Hsd3b1
  • Hsd3b5
  • Hsd3b5-ps1
  • Hsd3b6
  • Pomc
  • Pomc2
  • Serpina6
Rattus norvegicus (Norway rat)
Androgen biosynthesis
  • Cga
  • Cga1
  • Cyp17
  • Cyp17a1
  • Edh17b3
  • Hsd17b12
  • Hsd17b3
  • Hsd3b
  • Hsd3b1
  • Hsd3b5
  • Hsd3b5-ps1
  • Hsd3b6
  • Lhb
  • Pomc
  • Pomc2
  • Srd5a1
  • Srd5a2
  • Srd5a3
Rattus norvegicus (Norway rat)
IRAK2 mediated activation of TAK1 complex
  • Irak2
  • LOC100360645
  • Map3k7
  • Map3k7ip2
  • Rps27a
  • Tab1
  • Tab2
  • Tab3
  • Traf6
  • Uba80
  • Ubb
  • Ubbl1
  • Ubc
  • Ubcep1
  • Ubcl1
Rattus norvegicus (Norway rat)
IRAK2 mediated activation of TAK1 complex upon TLR7/8 or 9 stimulation
  • Cd14
  • Irak2
  • LOC100360645
  • Ly96
  • Map3k7
  • Map3k7ip2
  • Plin3
  • Rps27a
  • Tab1
  • Tab2
  • Tab3
  • Ticam1
  • Ticam2
  • Tlr4
  • Traf6
  • Uba80
  • Ubb
  • Ubbl1
  • Ubc
  • Ubcep1
  • Ubcl1
Rattus norvegicus (Norway rat)
TRAF6-mediated induction of TAK1 complex within TLR4 complex
  • Cd14
  • Irak2
  • LOC100360645
  • Ly96
  • Map3k7
  • Map3k7ip2
  • Plin3
  • Rps27a
  • Sarm1
  • Tab1
  • Tab2
  • Tab3
  • Ticam1
  • Ticam2
  • Tlr4
  • Traf6
  • Uba80
  • Ubb
  • Ubbl1
  • Ubc
  • Ubcep1
  • Ubcl1
Rattus norvegicus (Norway rat)
ALPK1 signaling pathway
  • Alpk1
  • LOC100360645
  • Map3k7
  • Map3k7ip2
  • Rps27a
  • Tab1
  • Tab2
  • Tab3
  • Tifa
  • Traf6
  • Uba80
  • Ubb
  • Ubbl1
  • Ubc
  • Ubcep1
  • Ubcl1
Rattus norvegicus (Norway rat)
AKT phosphorylates targets in the cytosol
  • Akt1
  • Akt1s1
  • Akt2
  • Akt3
  • Casp9
  • Cdkn1a
  • Cdkn1b
  • Chuk
  • Mdm2
  • Mkrn1
  • RNCASP9
  • Tsc2
  • p27Kip1
Rattus norvegicus (Norway rat)
Butyrate Response Factor 1 (BRF1) binds and destabilizes mRNA
  • Akt1
  • Brf1
  • Cmg1
  • Dcp1a
  • Dcp2
  • Dis3
  • Exosc1
  • Exosc2
  • Exosc3
  • Exosc4
  • Exosc5
  • Exosc6
  • Exosc7
  • Exosc8
  • Exosc9
  • LOC103690064
  • LOC679140
  • Mapkapk2
  • Tis11b
  • Xrn1
  • Ywhab
  • Zfp36l1
Rattus norvegicus (Norway rat)
Tristetraprolin (TTP, ZFP36) binds and destabilizes mRNA
  • Dcp1a
  • Dcp2
  • Dis3
  • Exosc1
  • Exosc2
  • Exosc3
  • Exosc4
  • Exosc5
  • Exosc6
  • Exosc7
  • Exosc8
  • Exosc9
  • LOC103690064
  • LOC679140
  • Mapkapk2
  • Tis11
  • Tnpo1
  • Ttp
  • Xrn1
  • Ywhab
  • Zfp36
Rattus norvegicus (Norway rat)
KSRP (KHSRP) binds and destabilizes mRNA
  • Akt1
  • Dcp2
  • Dis3
  • Exosc1
  • Exosc2
  • Exosc3
  • Exosc4
  • Exosc5
  • Exosc6
  • Exosc7
  • Exosc8
  • Exosc9
  • Fubp2
  • Khsrp
  • LOC103690064
  • LOC679140
  • Msfs1
  • Parn
  • Ywhaz
Rattus norvegicus (Norway rat)
HS-GAG biosynthesis
  • 3ost
  • 3ost1
  • 3ost2
  • Agrin
  • Agrn
  • Ext1
  • Ext2
  • Gpc1
  • Gpc2
  • Gpc3
  • Gpc4
  • Gpc5
  • Gpc6
  • Hs2st1
  • Hs3st1
  • Hs3st2
  • Hs3st3a1
  • Hs3st3b1
  • Hs3st4
  • Hs3st5
  • Hs3st6
  • Hs6st1
  • Hs6st2
  • Hs6st3
  • Hspg1
  • Hsst
  • Hsst1
  • Ndst1
  • Ndst2
  • Ndst3
  • Ndst4
  • Sdc1
  • Sdc2
  • Sdc3
  • Sdc4
  • Slc35d2
  • Synd1
  • Synd2
  • Synd3
  • Synd4
Rattus norvegicus (Norway rat)
Cell-extracellular matrix interactions
  • Abpl
  • Actp
  • Fblim1
  • Fermt2
  • Fln2
  • Flna
  • Flnc
  • ILK1
  • ILK2
  • Ilk
  • Lims1
  • Lims2
  • Parva
  • Parvb
  • Vasp
Rattus norvegicus (Norway rat)
Macroautophagy
  • AABR07040864.1
  • Ambra1
  • Ampk1
  • Apg12l
  • Apg3l
  • Apg7l
  • Apg9l1
  • Atg10
  • Atg101
  • Atg12
  • Atg13
  • Atg14
  • Atg14L
  • Atg16l1
  • Atg3
  • Atg4a
  • Atg4al1
  • Atg4b
  • Atg4c
  • Atg4d
  • Atg5
  • Atg7
  • Atg9a
  • Atg9b
  • Becn1
  • Chmp2a
  • Chmp2b
  • Chmp3
  • Chmp4b
  • Chmp4c
  • Chmp6
  • Chmp7
  • Dlc2
  • Dncl1
  • Dnclc1
  • Dynll1
  • Dynll2
  • ENSRNOG00000066475
  • Frap1
  • Gabarap
  • Gabarapl1
  • Gabarapl2
  • Gbl
  • Gec1
  • Gef2
  • LOC678769
  • Lamtor1
  • Lamtor3
  • Lamtor4
  • Lamtor5
  • Lst8
  • Map1alc3
  • Map1lc3
  • Map1lc3a
  • Map1lc3b
  • Map2k1ip1
  • Mlst8
  • Mtmr14
  • Mtmr3
  • Mtor
  • Pik3c3
  • Pik3r4
  • Pin
  • Prkaa1
  • Prkab1
  • Prkab2
  • Prkag1
  • Prkag2
  • Prkag3
  • Raft1
  • Rb1cc1
  • Rheb
  • Rptor
  • RragB
  • Rraga
  • Rragc
  • Rragc_predicted
  • Rragd
  • Slc38a9
  • Tsc1
  • Tsc2
  • Ulk1
  • Uvrag
  • Vps24
  • Vps34
  • WDR45L
  • Wdr45
  • Wdr45b
  • Wdr45l
  • Wdr45l_predicted
  • Wipi1
  • Wipi2
  • Wipi4
Rattus norvegicus (Norway rat)
Serine biosynthesis
  • Phgdh
  • Psat1
  • Psph
  • Serinc1
  • Serinc2
  • Serinc3
  • Serinc4
  • Serinc5
  • Srr
  • Tde1l
  • Tde2
  • Tpo1
Rattus norvegicus (Norway rat)
Insertion of tail-anchored proteins into the endoplasmic reticulum membrane
  • A4
  • AD1
  • Aldh3a2
  • Aldh4
  • App
  • Cyb5
  • Cyb5a
  • Emd
  • Hmox1
  • Prn
  • Prnp
  • Prp
  • Ramp4
  • Sap
  • Sec61b
  • Sec61g
  • Serp1
  • Sgt
  • Sgt1
  • Sgta
  • Stg
  • Stx1a
  • Stx5
  • Stx5a
  • Syb2
  • Ube2j2
  • Vamp2
  • Vap33
  • Vapa
Rattus norvegicus (Norway rat)
Golgi Associated Vesicle Biogenesis
  • AABR07054189.1
  • Acbd3
  • Adtb1
  • Ap1b1
  • Ap1g1
  • Ap1m1
  • Ap1m2
  • Ap1s1
  • Ap1s2
  • Ap1s3
  • Ap3b1
  • Ap3s1
  • Ap4b1
  • Ap4e1
  • Arf1
  • Arrb1
  • Bloc1s1
  • Bloc1s3
  • Bloc1s4
  • Bloc1s6
  • Bloc1s7
  • Bloc1s8
  • Calm
  • Clint1
  • Clta
  • Cltc
  • Cpd
  • Dnajc6
  • Dnm2
  • Dtnbp1
  • Dyn2
  • Fth
  • Fth1
  • Fth1-ps5
  • Ftl
  • Ftl1
  • Ftl1l2
  • Gak
  • Gcp60
  • Golgb1
  • Hip1r
  • Hsc70
  • Hsc73
  • Hspa8
  • Igf2r
  • LOC100359668
  • Napa
  • Necap1
  • Ocrl
  • Picalm
  • Pik3c2a
  • Pldn
  • Pum1
  • Rab5c
  • Sh3d19
  • Sh3d2a
  • Sh3gl2
  • Sh3p4
  • Snap
  • Snap25bp
  • Snapa
  • Snapap
  • Snapin
  • Snx2
  • Snx5
  • Snx9
  • Sort1
  • Syb2
  • Sybl1
  • Tbc1d8b
  • Tfrc
  • Tpd52
  • Tpd52l1
  • Trfr
  • Ttgn1
  • Txndc5
  • Vamp2
  • Vamp7
  • Vamp8
  • Yipf6
Rattus norvegicus (Norway rat)
Sema4D induced cell migration and growth-cone collapse
  • Arha
  • Arha2
  • Arhb
  • Arhgef11
  • Arhgef12
  • Erbb2
  • Neu
  • Plxnb1
  • Rhoa
  • Rhob
  • Rnd1
  • Rock1
  • Rock2
  • Sema4d
Rattus norvegicus (Norway rat)
RUNX3 regulates CDKN1A transcription
  • Madh3
  • Madh4
  • P53
  • Runx3
  • Smad3
  • Smad4
  • Tgfb1
  • Tp53
  • Zfhx3
Rattus norvegicus (Norway rat)
RUNX3 regulates p14-ARF
  • Cbfb
  • Ccnd1
  • Ep300
  • Hdac4
  • Runx3
  • Tgfb1
Rattus norvegicus (Norway rat)

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GlyCosmos is a member of the GlySpace Alliance together with GlyGen and Glycomics@ExPASy.

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Supported by JST NBDC Grant Number JPMJND2204

Partly supported by NIH Common Fund Grant #1U01GM125267-01


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Last updated: August 19, 2024