GlyCosmos Pathways

Integrated of pathway data, containing glycoproteins and glycans obtained from Reactome and the Metabolism of carbohydrates in Escherichia coli O-antigens obtained from ECODAB. Search by pathway name, species, and protein name.

Source Last Updated
Reactome March 20, 2024
ECODAB April 1, 2019
Displaying entries 976 - 1000 of 1070 in total
Pathway Name Protein Name UniProt ID Gene Symbol Organism GlyTouCan ID ▲
Intra-Golgi traffic
  • Akp3
  • Alpi
  • Alpp
  • Arf1
  • Bet1l
  • Cog1
  • Cog2
  • Cog3
  • Cog4
  • Cog5
  • Cog6
  • Cog7
  • Cyth1
  • Cyth2
  • Cyth3
  • Cyth4
  • Erg1
  • Gosr1
  • Gosr2
  • Gs15
  • Gs27
  • Gs28
  • Napa
  • Napb
  • Napg
  • Nsf
  • Pscd1
  • Pscd2
  • Pscd3
  • RGD1310016
  • Rab30
  • Rab33b
  • Rab36
  • Rab39a
  • Rgp1
  • Ric1
  • Sec7a
  • Sec7b
  • Sec7c
  • Snap
  • Snap29
  • Snapa
  • Snapb
  • Stx16
  • Stx5
  • Stx5a
  • Stx6
  • Trip11
  • Vps45
  • Vps45a
  • Vti1a
  • Vti1l2
  • Ykt6
Rattus norvegicus (Norway rat)
NPAS4 regulates expression of target genes
  • Arnt
  • Arnt2
  • Arntl
  • Bmal1
  • Maged1
  • Npas4
  • Nrage
  • Nxf
  • Tic
Rattus norvegicus (Norway rat)
Aromatic amines can be N-hydroxylated or N-dealkylated by CYP1A2
  • Cyp1a-2
  • Cyp1a2
Rattus norvegicus (Norway rat)
Synthesis of active ubiquitin: roles of E1 and E2 enzymes
  • AABR07041109.1
  • Cdc34
  • Fam105b
  • Hausp
  • LOC100360645
  • LOC100362554
  • LOC100366017
  • LOC64038
  • NEWGENE_1308361
  • Otulin
  • Rad6b
  • Rps27a
  • Uba1
  • Uba6
  • Uba80
  • Ubb
  • Ubbl1
  • Ubc
  • Ubc4
  • Ubc7
  • Ubcep1
  • Ubch4
  • Ubch5b
  • Ubcl1
  • Ube1
  • Ube2a
  • Ube2b
  • Ube2c
  • Ube2d1
  • Ube2d2
  • Ube2e1
  • Ube2e3
  • Ube2g
  • Ube2g1
  • Ube2g2
  • Ube2h
  • Ube2k
  • Ube2l3
  • Ube2q2
  • Ube2r2
  • Ube2s
  • Ube2t
  • Ube2w
  • Ube2z
  • Uchl3
  • Usp5
  • Usp7
Rattus norvegicus (Norway rat)
Interleukin-2 signaling
  • Fak2
  • Il-2
  • Il2
  • Il2ra
  • Il2rb
  • Jak1
  • Jak3
  • Lck
  • Mgf
  • Ptk2b
  • Pyk2
  • Shc1
  • Stat5a
  • Stat5b
  • Syk
Rattus norvegicus (Norway rat)
Cyclin A:Cdk2-associated events at S phase entry
  • Akt1
  • Akt2
  • Akt3
  • Cables1
  • Cak
  • Cak1
  • Ccna1
  • Ccna2
  • Ccnh
  • Cdc25a
  • Cdc25b
  • Cdk2
  • Cdk7
  • Cdkn1a
  • Cdkn1b
  • Cdkn2
  • Fzr1
  • Mnat1
  • Mo15
  • Rb-1
  • Rb1
  • Wee1
  • p27Kip1
Rattus norvegicus (Norway rat)
Interleukin-4 and Interleukin-13 signaling
  • Grp94
  • Hsp90b1
  • Hspc4
  • Il-13
  • Il-4
  • Il13
  • Il13ra1
  • Il13ra1-ps1
  • Il13ra2
  • Il4
  • Il4r
  • Il4ra
  • Jak1
  • Jak2
  • Jak3
  • LOC100360218
  • Socs1
  • Socs5
  • Stat1
  • Stat3
  • Stat4
  • Stat6
  • Tra1
  • Tyk2
Rattus norvegicus (Norway rat)
Class I peroxisomal membrane protein import
  • Abcd1
  • Abcd2
  • Abcd3
  • Acbd5
  • Aldh3a2
  • Aldh4
  • Aldr
  • Aldrp
  • Atad1
  • Fis1
  • Gdap1
  • Npg6
  • Paf1
  • Paf3
  • Pex11b
  • Pex12
  • Pex14
  • Pex16
  • Pex19
  • Pex2
  • Pex3
  • Pmp22
  • Pmp24
  • Pmp35
  • Pmp70
  • Pxf
  • Pxmp1
  • Pxmp2
  • Pxmp3
  • Pxmp4
  • Ttc11
Rattus norvegicus (Norway rat)
GRB2 events in ERBB2 signaling
  • Ash
  • Btc
  • Dtr
  • Erbb2
  • Ereg
  • Grb2
  • Hbegf
  • Hegfl
  • Hras
  • Hras1
  • Kras
  • Kras2
  • Ndf
  • Neu
  • Nras
  • Nrg1
  • Nrg2
  • Nrg3
  • Ntak
  • Sos1
Rattus norvegicus (Norway rat)
Interleukin-15 signaling
  • Ash
  • Grb2
  • Il15
  • Il15ra
  • Il2rb
  • Jak1
  • Jak3
  • Mgf
  • Shc1
  • Sos1
  • Sos2
  • Stat3
  • Stat5a
  • Stat5b
Rattus norvegicus (Norway rat)
TFAP2 (AP-2) family regulates transcription of growth factors and their receptors
  • Atad2
  • Cga
  • Cga1
  • Esr
  • Esr1
  • Estr
  • Lhb
  • Nr3a1
Rattus norvegicus (Norway rat)
Dopamine Neurotransmitter Release Cycle
  • Apba1
  • Bzrap1
  • Cask
  • Cplx1
  • Lin7a
  • Lin7b
  • Lin7c
  • Mals1
  • Mals2
  • Mals3
  • Mint1
  • Ppfia1
  • Ppfia2
  • Ppfia3
  • Ppfia4
  • Rab3a
  • Rbp1
  • Rim1
  • Rims1
  • Sap
  • Slc18a2
  • Snap
  • Snap25
  • Stx1a
  • Stxbp1
  • Svat
  • Syb2
  • Syn1
  • Syn2
  • Syn3
  • Syt1
  • Tspoap1
  • Unc13b
  • Unc13h2
  • Unc18a
  • Vamp2
  • Veli1
  • Veli1a
  • Veli2
  • Veli3
  • Vmat2
  • X11
Rattus norvegicus (Norway rat)
Regulation of TP53 Activity through Association with Co-factors
  • Akt1
  • Akt2
  • Akt3
  • Brn-3
  • Brn3
  • Brn3a
  • Brn3b
  • Ket
  • P53
  • P63
  • Phf20
  • Pou4f1
  • Pou4f2
  • Ppp1r13b
  • Ppp1r13l
  • Tp53
  • Tp53bp2
  • Tp63
  • Tp73
  • Tp73l
  • Trp63
  • Zfp385a
Rattus norvegicus (Norway rat)
Glutathione synthesis and recycling
  • Botch
  • Chac1
  • Chac2
  • Cndp2
  • Gclc
  • Gclm
  • Ggct
  • Ggt
  • Ggt1
  • Ggt5
  • Ggt6
  • Ggt7
  • Ggtl3
  • Ggtla1
  • Glclc
  • Glclr
  • Gss
  • Npg7
  • Oplah
Rattus norvegicus (Norway rat)
Hedgehog ligand biogenesis
  • Derl2
  • Dhh
  • Erlec1
  • Hhat
  • Ihh
  • LOC100360645
  • LOC100360846
  • LOC100365869
  • LOC100910831
  • Lmp10
  • Lmp2
  • Mecl1
  • Mss1
  • Os9
  • P4hb
  • Pdia1
  • Psma1
  • Psma2
  • Psma3
  • Psma4
  • Psma5
  • Psma6
  • Psma7
  • Psma8
  • Psmb1
  • Psmb10
  • Psmb2
  • Psmb3
  • Psmb4
  • Psmb5
  • Psmb6
  • Psmb6l
  • Psmb6l1
  • Psmb7
  • Psmb8
  • Psmb9
  • Psmc1
  • Psmc2
  • Psmc3
  • Psmc4
  • Psmc5
  • Psmc6
  • Psmd1
  • Psmd10
  • Psmd11
  • Psmd12
  • Psmd13
  • Psmd14
  • Psmd2
  • Psmd3
  • Psmd5
  • Psmd6
  • Psmd7
  • Psmd8
  • Psmd9
  • Psme1
  • Psme2
  • Psme4
  • Psmf1
  • Ring12
  • Rps27a
  • Sel1h
  • Sel1l
  • Shh
  • Sug1
  • Syvn1
  • Tbp1
  • Tbp7
  • Uba80
  • Ubb
  • Ubbl1
  • Ubc
  • Ubcep1
  • Ubcl1
  • Vcp
  • Vhh-1
Rattus norvegicus (Norway rat)
TAK1-dependent IKK and NF-kappa-B activation
  • A4
  • AD1
  • Ager
  • App
  • Chuk
  • Hmg-1
  • Hmg1
  • Hmgb1
  • Hmgb1-ps33
  • Hmgb1-ps4
  • Hmgb1l1
  • Hmgb1l2
  • Hmgb1l3
  • Hmgb1l5
  • Ikba
  • Ikbb
  • Ikbkb
  • Ikbkg
  • Ikkb
  • LOC108349189
  • LOC108350839
  • Nemo
  • Nfkb2
  • Nfkbia
  • Nfkbib
  • Nkiras1
  • Nkiras2
  • Rage
  • Rela
  • S100b
Rattus norvegicus (Norway rat)
Thromboxane signalling through TP receptor
  • Aamp
  • Gna11
  • Gna13
  • Gna14
  • Gna15
  • Gnaq
  • Gnb1
  • Gnb2
  • Gnb3
  • Gnb4
  • Gnb5
  • Gng10-ps1
  • Gng11
  • Gng12
  • Gng3
  • Gng4
  • Gng5
  • Gng5-ps4
  • Gng7
  • Gng8
  • Gng9
  • Gngt1
  • Gngt11
  • Gngt5
  • Gngt7
  • Gngt9
  • Tbxa2r
Rattus norvegicus (Norway rat)
Spry regulation of FGF signaling
  • Ash
  • Braf
  • Cbl
  • Erk1
  • Erk2
  • Grb2
  • LOC100360645
  • Mapk
  • Mapk1
  • Mapk3
  • Mknk1
  • Mnk1
  • Ppp2ca
  • Ppp2cb
  • Ppp2r1a
  • Prkm1
  • Prkm3
  • Ptpn11
  • Rps27a
  • Spry2
  • Src
  • Uba80
  • Ubb
  • Ubbl1
  • Ubc
  • Ubcep1
  • Ubcl1
Rattus norvegicus (Norway rat)
SUMOylation of chromatin organization proteins
  • Aaas
  • Cbx2
  • Cbx4
  • Cbx8
  • Gp210
  • H4c16
  • H4c2
  • H4f16
  • H4ft
  • Hdac1
  • Hdac2
  • Hdac4
  • Hist1h4b
  • Hist1h4m
  • Hist4
  • Hist4h4
  • L3mbtl2
  • LOC683983
  • Miz1
  • Mrnp41
  • Ndc1
  • Npap60
  • Nup107
  • Nup121
  • Nup133
  • Nup153
  • Nup155
  • Nup160
  • Nup188
  • Nup205
  • Nup210
  • Nup214
  • Nup35
  • Nup37
  • Nup42
  • Nup43
  • Nup50
  • Nup53
  • Nup54
  • Nup58
  • Nup62
  • Nup84
  • Nup85
  • Nup88
  • Nup93
  • Nup98
  • Nupl1
  • Nupl2
  • Pcnt1
  • Phc1
  • Phc2
  • Phc3
  • Pias1
  • Pias2
  • Piasx
  • Pom121
  • Pom210
  • Rae1
  • Ranbp2
  • Ring1
  • Ring1b
  • Rnf1
  • Rnf2
  • Satb1
  • Satb2
  • Scml2
  • Sec13
  • Sec13l1
  • Smt3a
  • Smt3h2
  • Sumo1
  • Sumo2
  • Sumo3
  • Suz12
  • Tmem48
  • Tpr
  • Ubce9
  • Ube2i
Rattus norvegicus (Norway rat)
Sensory perception of salty taste
  • Renac
  • Scnn1a
  • Scnn1b
  • Scnn1g
Rattus norvegicus (Norway rat)
Lysosphingolipid and LPA receptors
  • Edg1
  • Edg2
  • Edg5
  • Edg7
  • Edg8
  • Gpcr91
  • Lpa1
  • Lpa3
  • Lpar1
  • Lpar2
  • Lpar3
  • Lpar5
  • Lppr1
  • Lppr2
  • Lppr3
  • Lppr4
  • Nrg1
  • Php1
  • Plppr1
  • Plppr2
  • Plppr3
  • Plppr4
  • Plppr5
  • Prg1
  • Prg2
  • Prg3
  • Prg4
  • S1pr1
  • S1pr2
  • S1pr3
  • S1pr4
  • S1pr5
Rattus norvegicus (Norway rat)
Rhesus glycoproteins mediate ammonium transport.
  • Rh50
  • Rhag
  • Rhbg
  • Rhcg
Rattus norvegicus (Norway rat)
SMAD2/SMAD3:SMAD4 heterotrimer regulates transcription
  • AABR07035338.1
  • Ccnc
  • Ccnk
  • Ccnt1
  • Ccnt2
  • Cdk8
  • Cdk9
  • E2f4
  • E2f5
  • Erk1
  • Erk2
  • Fur
  • Furin
  • LOC100360645
  • MGC112830
  • Madh2
  • Madh3
  • Madh4
  • Madh7
  • Mapk
  • Mapk1
  • Mapk3
  • Men1
  • Pcsk3
  • Prkm1
  • Prkm3
  • Rbl1
  • Rnf111
  • Rps27a
  • Smad2
  • Smad3
  • Smad4
  • Smad7
  • Sp1
  • Tfdp1
  • Tfdp2
  • Uba80
  • Ubb
  • Ubbl1
  • Ubc
  • Ubcep1
  • Ubcl1
  • Wwtr1
Rattus norvegicus (Norway rat)
Generation of second messenger molecules
  • AABR07044416.1
  • Arrb2-ps
  • Cd101
  • Cd247
  • Cd3d
  • Cd3e
  • Cd3g
  • Cd4
  • DA1
  • Db2
  • ENSRNOG00000065769
  • ENSRNOG00000065908
  • ENSRNOG00000065955
  • ENSRNOG00000070909
  • Fyb
  • Fyb1
  • Grap2
  • H2-Ea
  • Hla-dma
  • Hla-dmb
  • Itk
  • LOC100911800
  • Lat
  • Lck
  • Lcp2
  • Nck1
  • Pak1
  • Pak2
  • Pak3
  • Plcg1
  • Plcg2
  • Psmb9
  • RT1-Ba
  • RT1-Bb
  • RT1-DOb
  • RT1-Da
  • RT1-Db1
  • RT1-Db2
  • RT1-Ha
  • RT1-Hb-ps1
  • T3d
  • Tap1
  • Tap2
  • Tesb
  • Trbv16
  • Zap70
Rattus norvegicus (Norway rat)
Trafficking and processing of endosomal TLR
  • Cnpy3
  • Cts7l2
  • Ctsb
  • Ctsk
  • Ctsl
  • Ctsl1
  • Ctsll3
  • Ctss
  • Grp94
  • Hsp90b1
  • Hspc4
  • Lgmn
  • Prsc1
  • RGD1308751
  • Tlr7
  • Tlr8
  • Tlr9
  • Tra1
  • Unc93b1
Rattus norvegicus (Norway rat)

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GlyCosmos is a member of the GlySpace Alliance together with GlyGen and Glycomics@ExPASy.

Acknowledgements

Supported by JST NBDC Grant Number JPMJND2204

Partly supported by NIH Common Fund Grant #1U01GM125267-01


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Last updated: August 19, 2024