GlyCosmos Portal

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Organisms	Evidence
Danio rerio (zebrafish)	GlycomeAtlas
Saccharomyces cerevisiae (brewer's yeast)	GlyTouCan(glycome-db)
Mus musculus (house mouse)	GlyConnectStructure GlyGen(UniCarbKB) GlyTouCan(glycome-db)
Sus scrofa (pig)	GlyTouCan(glycome-db)
Homo sapiens (human)	GlyConnectStructure GlyGen(UniCarbKB) GlyTouCan(glycome-db)

Taxonomic Hierarchy

root

cellular organisms [inference]

Eukaryota (eucaryotes) [inference]

Opisthokonta [inference]

Metazoa (metazoans) [inference]

Eumetazoa [inference]

Bilateria [inference]

Deuterostomia [inference]

Chordata (chordates) [inference]

Craniata [inference]

Vertebrata (vertebrates) [inference]

Gnathostomata (jawed vertebrates) [inference]

Teleostomi [inference]

Euteleostomi (bony vertebrates) [inference]

Sarcopterygii [inference]

Dipnotetrapodomorpha [inference]

Tetrapoda (tetrapods) [inference]

Amniota (amniotes) [inference]

Mammalia (mammals) [inference]

Theria [inference]

Eutheria (placentals) [inference]

Boreoeutheria [inference]

Euarchontoglires [inference]

Glires (Rodents and rabbits) [inference]

Rodentia (rodent) [inference]

Myomorpha (mice and others) [inference]

Muroidea [inference]

Muridae [inference]

Murinae [inference]

Mus (mice) [inference]

Mus [inference]

Mus musculus (house mouse)

Rattus [inference]

Rattus norvegicus (Norway rat)

Cricetidae [inference]

Cricetinae (hamsters) [inference]

Cricetulus [inference]

Cricetulus griseus (Chinese hamster)

Primates [inference]

Haplorrhini [inference]

Simiiformes [inference]

Catarrhini [inference]

Hominoidea (apes) [inference]

Hominidae (great apes) [inference]

Homininae [inference]

Homo [inference]

Homo sapiens (human)

Laurasiatheria [inference]

Artiodactyla (even-toed ungulates & whales) [inference]

Ruminantia [inference]

Pecora [inference]

Bovidae [inference]

Bovinae [inference]

Bos (cattle) [inference]

Bos taurus (domestic cattle)

Suina [inference]

Suidae (pigs) [inference]

Sus [inference]

Sus scrofa (pig)

Carnivora (carnivores) [inference]

Caniformia [inference]

Canidae (dog, coyote, wolf, fox) [inference]

Canis [inference]

Canis lupus (gray wolf) [inference]

Canis lupus familiaris (dog)

Actinopterygii (ray-finned fishes) [inference]

Actinopteri [inference]

Neopterygii [inference]

Teleostei (teleost fishes) [inference]

Osteoglossocephalai [inference]

Clupeocephala [inference]

Otomorpha [inference]

Ostariophysi [inference]

Otophysi [inference]

Cypriniphysae [inference]

Cypriniformes (carps and others) [inference]

Cyprinoidei [inference]

Danionidae [inference]

Danioninae [inference]

Danio [inference]

Danio rerio (zebrafish)

Fungi [inference]

Dikarya [inference]

Ascomycota (ascomycetes) [inference]

saccharomyceta [inference]

Saccharomycotina (true yeasts) [inference]

Saccharomycetes [inference]

Saccharomycetales [inference]

Saccharomycetaceae [inference]

Saccharomyces [inference]

Saccharomyces cerevisiae (brewer's yeast)

GlycoGene Database (GGDB)

Displaying entries **6 - 8** of 8 in total

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Gene Symbol	Donor	Acceptor	Reducing terminal(Acceptor)	Product	Reducing terminal(Product)	Reference
ST3GAL2	CMP-Neu5Ac	G00031MO	R	G65562ZE	R	9266697
ST6GALNAC2	CMP-Neu5Ac	G65562ZE	Ser/Thr	G01614ZM	Ser/Thr	10742600
ST6GALNAC1	CMP-Neu5Ac	G65562ZE	Ser/Thr	G01614ZM	Ser/Thr	10536037

Displaying entries **1 - 5** of 14 in total

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Gene Symbol	Donor	Acceptor	Reducing terminal(Acceptor)	Product	Reducing terminal(Product)	Reference
ST3GAL4	CMP-Neu5Ac	G00031MO	free	G65562ZE	free	8288606
ST3GAL1	CMP-Neu5Ac	G00031MO	Antifreeze glycoprotein	G65562ZE	Antifreeze glycoprotein	8027041
ST6GALNAC3	CMP-Neu5Ac	G65562ZE	Ser/Thr	G01614ZM	Ser/Thr	10536037 16169874
ST3GAL3	CMP-Neu5Ac	G00031MO	free	G65562ZE	free	8288606
ST6GALNAC4	CMP-Neu5Ac	G65562ZE	R	G01614ZM	R	11062056

Displaying **all 3** entries
Gene Symbol	Donor	Acceptor	Reducing terminal(Acceptor)	Reference
ST6GALNAC2	CMP-Neu5Ac	G65562ZE	benzyl	11062056
GAL3ST3	PAPS	G65562ZE	octyl	11323440
GAL3ST2	PAPS	G65562ZE	octyl	11323440

KEGG BRITE Database

KEGG ID

Enzyme

Reactions

Displaying **all 2** entries
KEGG Reaction	Enzyme	Acceptor	Product
R05913	2.4.3.4	G00031MO	G65562ZE
R05914	2.4.3.3 2.4.3.7	G65562ZE	G01614ZM

Core Protein

Displaying entries **21 - 30** of 39 in total

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UniProt ID	Protein Name	Reference	Source
P06028	Glycophorin-B	1421410 3305497 3624241	GlyGen
P06867	Plasminogen	3356193	GlyConnect
P06868	Plasminogen	3356193	GlyConnect
P07359	Platelet glycoprotein Ib alpha chain	3571205 6327299	GlyGen GlyConnect
P08519	Apolipoprotein(a)	11294842	GlyGen GlyConnect
P08575	Receptor-type tyrosine-protein phosphatase C	8122360	GlyGen GlyConnect
P08751	Lutropin/choriogonadotropin subunit beta	2331995	GlyConnect
P0DN86	Choriogonadotropin subunit beta 3	3335536	GlyGen GlyConnect
P10645	Chromogranin-A	9852066	GlyGen GlyConnect
P12763	Alpha-2-HS-glycoprotein	24907489 4137945 9266717	GlyConnect

GlycomeAtlas

Tissues in which this glycan is expressed are highlighted in yellow.

Danio rerio

Literature

Tissue

heart
intestine
liver

Reference

Yamakawa N et al. Systems glycomics of adult zebrafish identifies organ-specific sialylation and glycosylation patterns. Nat Commun. 2018;9(1):4647. Published 2018 Nov 7. doi:10.1038/s41467-018-06950-3

DOI

10.1038/s41467-018-06950-3

Localization sites organized by hierarchy by Uber-anatomy ontology (UBERON)

material anatomical entity

anatomical structure

endoderm-derived structure

liver

mesoderm-derived structure

heart

multicellular anatomical structure

organ

gland

exocrine gland

liver

endocrine gland

digestive system gland

liver

compound organ

circulatory organ

primary circulatory organ

heart

trunk region element

abdominal segment element

abdomen element

liver

thoracic segment organ

heart

digestive system element

digestive system gland

liver

organ part

subdivision of tube

subdivision of digestive tract

intestine

structure with developmental contribution from neural crest

heart

Sequence Descriptors

GlycoCT

RES
1b:a-dgal-HEX-1:5
2s:n-acetyl
3b:b-dgal-HEX-1:5
4b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d
5s:n-acetyl
LIN
1:1d(2+1)2n
2:1o(3+1)3d
3:3o(3+2)4d
4:4d(5+1)5n

WURCS

WURCS=2.0/3,3,2/[a2112h-1a_1-5_2*NCC/3=O][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O]/1-2-3/a3-b1_b3-c2

GlyTouCan

GlyComb

GlycoPOST

UniCarb-DR

LM-GlycoRepo

All Resources

Other Information

Tools

Search Tools

Summary

External Links

3D Structures

KEGG BRITE Database

Literature

Sequence Descriptors

International Collaboration

Acknowledgements