GlyCosmos Pathways

Integrated of pathway data, containing glycoproteins and glycans obtained from Reactome and the Metabolism of carbohydrates in Escherichia coli O-antigens obtained from ECODAB. Search by pathway name, species, and protein name.

Source Last Updated
Reactome March 20, 2024
ECODAB April 1, 2019
Displaying entries 601 - 625 of 1070 in total
Pathway Name Protein Name UniProt ID Gene Symbol Organism GlyTouCan ID
HS-GAG biosynthesis
  • 3ost
  • 3ost1
  • 3ost2
  • Agrin
  • Agrn
  • Ext1
  • Ext2
  • Gpc1
  • Gpc2
  • Gpc3
  • Gpc4
  • Gpc5
  • Gpc6
  • Hs2st1
  • Hs3st1
  • Hs3st2
  • Hs3st3a1
  • Hs3st3b1
  • Hs3st4
  • Hs3st5
  • Hs3st6
  • Hs6st1
  • Hs6st2
  • Hs6st3
  • Hspg1
  • Hsst
  • Hsst1
  • Ndst1
  • Ndst2
  • Ndst3
  • Ndst4
  • Sdc1
  • Sdc2
  • Sdc3
  • Sdc4
  • Slc35d2
  • Synd1
  • Synd2
  • Synd3
  • Synd4
Rattus norvegicus (Norway rat)
Effects of PIP2 hydrolysis
  • Dagk
  • Dagk1
  • Dagk2
  • Dagk3
  • Dagk6
  • Dgka
  • Dgkb
  • Dgkd
  • Dgke
  • Dgkg
  • Dgkh
  • Dgki
  • Dgkk
  • Dgkq
  • Dgkz
  • Insp3r
  • Itpr1
  • Itpr2
  • Itpr3
  • Pkcd
  • Pkce
  • Pkch
  • Pkcq
  • Prkcd
  • Prkce
  • Prkch
  • Prkcq
  • Trpc3
  • Trpc7
  • Trrp3
Rattus norvegicus (Norway rat)
Nephrin family interactions
  • Fyn
  • Iqgap1
  • Kirrel
  • Kirrel1
  • Kirrel2
  • Kirrel3
  • Nck1
  • Nck2
  • Neph1
  • Nphn
  • Nphs1
Rattus norvegicus (Norway rat)
Repression of WNT target genes
  • Bars
  • Ctbp1
  • Ctbp2
  • Ctbp3
  • Esp2
  • Esp3
  • Grg4
  • Lef1
  • Tcf7
  • Tcf7l1
  • Tcf7l2
  • Tle1
  • Tle2
  • Tle3
  • Tle4
Rattus norvegicus (Norway rat)
LDL clearance
  • Aadacl1
  • Acact
  • Acat
  • Acat2
  • Adtab
  • Ap17
  • Ap2a1
  • Ap2a2
  • Ap2b1
  • Ap2m1
  • Ap2s1
  • Apob
  • Arh
  • Clapb1
  • Claps2
  • Clta
  • Cltc
  • Lal
  • Ldlr
  • Ldlrap1
  • Lip1
  • Lipa
  • Narc1
  • Nceh1
  • Npc1
  • Npc2
  • Pcsk9
  • Soat1
  • Soat2
Rattus norvegicus (Norway rat)
RUNX1 regulates transcription of genes involved in BCR signaling
  • Aml1
  • Cbfa2
  • Cbfb
  • Pax5
  • Runx1
Rattus norvegicus (Norway rat)
Synthesis of bile acids and bile salts via 7alpha-hydroxycholesterol
  • Abcb11
  • Acot8
  • Acox2
  • Acsb
  • Acsvl1
  • Akr1c1
  • Akr1c21
  • Akr1d1
  • Amacr
  • Baat
  • Bar
  • Bsep
  • Cca2
  • Cyp27
  • Cyp27a1
  • Cyp7
  • Cyp7a1
  • Cyp7b1
  • Cyp8
  • Cyp8b1
  • Edh17b4
  • Facvl1
  • Fatp2
  • Fatp5
  • Fxr
  • Hsd17b4
  • Hsd17b5
  • Hsd3b7
  • Ncoa1
  • Ncoa2
  • Nr1h4
  • Nr2b1
  • Pte1
  • Ptgis
  • Rip14
  • Rxra
  • Scp-2
  • Scp2
  • Slc27a2
  • Slc27a5
  • Spgp
  • Thcox
  • Tif2
  • Vlacs
  • Vlacsr
  • Vlcs
Rattus norvegicus (Norway rat)
PCP/CE pathway
  • Arha
  • Arha2
  • Daam1
  • Dvl1
  • Dvl2
  • Dvl3
  • Fzd1
  • Fzd3
  • Fzd6
  • Fzd7
  • LOC100361515
  • Pfn1
  • Rac
  • Rac1
  • Rac2
  • Rhoa
  • Wnt-4
  • Wnt-5a
  • Wnt1
  • Wnt11
  • Wnt4
  • Wnt5a
  • Wnt5b
Rattus norvegicus (Norway rat)
NCAM1 interactions
  • Col4a1
  • Col4a2
  • Col4a3
  • Col4a4
  • Col4a5
  • LOC100911572
  • Ncam
  • Ncam1
  • Siat8b
  • St8sia2
  • St8sia4
  • Stx
Rattus norvegicus (Norway rat)
Regulation of APC/C activators between G1/S and early anaphase
  • Anapc1
  • Anapc15
  • Anapc16
  • Anapc2
  • Anapc4
  • Anapc5
  • Anapc7
  • Ccna1
  • Ccna2
  • Ccnb1
  • Cdc16
  • Cdc2
  • Cdc20
  • Cdc23
  • Cdc26
  • Cdc27
  • Cdc2a
  • Cdk1
  • Cdk2
  • Cdkn1
  • Cdkn2
  • Fzr1
  • LOC100366017
  • Ube2c
  • Ube2d1
  • Ube2e1
  • Ube2s
Rattus norvegicus (Norway rat)
Regulation of necroptotic cell death
  • Aip1
  • Api3
  • Birc2
  • Birc3
  • Birc4
  • Casp8
  • Cdc37
  • Fadd
  • Flot1
  • Flot2
  • Hsp86
  • Hsp90aa1
  • Hspca
  • Itch
  • LOC100360645
  • Mlkl
  • NEWGENE_1308361
  • Ogt
  • Park2
  • Pdcd6ip
  • Prkn
  • Reg1
  • Reg2
  • Rip3
  • Ripk1
  • Ripk3
  • Rps27a
  • Sdcbp
  • Tradd
  • Traf2
  • Uba80
  • Ubb
  • Ubbl1
  • Ubc
  • Ubcep1
  • Ubcl1
  • Ube2l3
  • Xiap
Rattus norvegicus (Norway rat)
ARMS-mediated activation
  • Arms
  • Crk
  • Crko
  • Kidins220
  • Krev1
  • Ngf
  • Ngfb
  • Ntrk1
  • Rap1a
  • Trk
  • Trka
Rattus norvegicus (Norway rat)
Formation of xylulose-5-phosphate
  • Akr1a1
  • Alr
  • Cry
  • Cryl1
  • Dcxr
  • Glb
  • Sdh1
  • Sord
  • Xylb
Rattus norvegicus (Norway rat)
Vitamin D (calciferol) metabolism
  • Arh
  • Cubn
  • Cyp24
  • Cyp24a1
  • Cyp27b
  • Cyp27b1
  • Cyp2r1
  • Dbp
  • Gc
  • Ifcr
  • Ldlrap1
  • Lgmn
  • Lrp2
  • Nr1i1
  • Pias4
  • Prsc1
  • Smt3a
  • Smt3h2
  • Sumo2
  • Ubce9
  • Ube2i
  • Vdr
Rattus norvegicus (Norway rat)
Surfactant metabolism
  • Abca3
  • Adgrf5
  • Adora2a
  • Adora2b
  • Adra2a
  • Adra2c
  • Ccdc59
  • Ckap4
  • Ctsh
  • Gata6
  • Gpr116
  • Gprhep
  • Lmcd1
  • Napsa
  • P2ru1
  • P2ry2
  • Sftp-1
  • Sftp1
  • Sftp2
  • Sftp3
  • Sftp4
  • Sftpa
  • Sftpa1
  • Sftpb
  • Sftpc
  • Sftpd
  • Slc17a2
  • Slc34a1
  • Slc34a2
  • Srec
  • Ttf1
  • Zdhhc2
Rattus norvegicus (Norway rat)
Regulation of cholesterol biosynthesis by SREBP (SREBF)
  • Kpnb1
  • Mbtps1
  • Ran
  • S1p
  • Scap
  • Ski1
  • Srebf1
  • Srebf2
  • Srebp1
Rattus norvegicus (Norway rat)
Intrinsic Pathway of Fibrin Clot Formation
  • A2m
  • A2m1
  • C1qbp
  • Cf9
  • F10
  • F11
  • F12
  • F2
  • F8
  • F9
  • Gc1qbp
  • Gp1ba
  • Gp1bb
  • Gp5
  • Gp9
  • Hcf2
  • Klk3
  • Klkb1
  • Kng
  • Kng1
  • Pi7
  • Pk
  • Pn1
  • Prcp
  • Proc
  • Pros
  • Pros1
  • Serpina5
  • Serpinc1
  • Serpind1
  • Serpine2
  • Serping1
Rattus norvegicus (Norway rat)
CD28 co-stimulation
  • Cd28
  • Cd80
  • Cd86
  • Fyn
  • Grap2
  • Lck
  • Lyn
  • Src
  • Yes1
Rattus norvegicus (Norway rat)
Interleukin-1 signaling
  • Btrc
  • Chuk
  • Cul1
  • ENSRNOG00000067007
  • Ikba
  • Ikbkb
  • Ikbkg
  • Ikkb
  • Il-1r2
  • Il-1ra
  • Il1a
  • Il1b
  • Il1r1
  • Il1r2
  • Il1ra
  • Il1rap
  • Il1rb
  • Il1rn
  • Irak1
  • Irak2
  • Irak3
  • Irak4
  • LOC100360645
  • Map2k6
  • Map3k7
  • Map3k7ip2
  • Mkk6
  • Myd88
  • Nemo
  • Nfkbia
  • Peli2
  • Rbx1
  • Rela
  • Rps27a
  • Skp1
  • Skp1a
  • Sqstm1
  • Tab1
  • Tab2
  • Tab3
  • Tollip
  • Traf6
  • Uba80
  • Ubb
  • Ubbl1
  • Ubc
  • Ubcep1
  • Ubcl1
  • Zip
Rattus norvegicus (Norway rat)
Hyaluronan biosynthesis and export
  • Abcc5
  • Cemip
  • HAS1
  • HAS3
  • Has1
  • Has2
  • Has3
  • LOC282821
  • Mrp5
  • RGD1305254
Rattus norvegicus (Norway rat)
IRAK2 mediated activation of TAK1 complex upon TLR7/8 or 9 stimulation
  • Cd14
  • Irak2
  • LOC100360645
  • Ly96
  • Map3k7
  • Map3k7ip2
  • Plin3
  • Rps27a
  • Tab1
  • Tab2
  • Tab3
  • Ticam1
  • Ticam2
  • Tlr4
  • Traf6
  • Uba80
  • Ubb
  • Ubbl1
  • Ubc
  • Ubcep1
  • Ubcl1
Rattus norvegicus (Norway rat)
RUNX3 regulates YAP1-mediated transcription
  • Runx3
  • Tead1
  • Tead2
  • Tead3
  • Tead4
  • Yap
  • Yap1
  • Yap65
Rattus norvegicus (Norway rat)
Acetylcholine regulates insulin secretion
  • Gna11
  • Gna14
  • Gna15
  • Gnaq
  • Macs
  • Marcks
  • Pkca
  • Plcb1
  • Plcb2
  • Plcb3
  • Prkca
Rattus norvegicus (Norway rat)
Transport of RCbl within the body
  • Abcc1
  • Arh
  • Cd320
  • Ldlrap1
  • Lrp2
  • Mrp1
  • Tcn2
Rattus norvegicus (Norway rat)
Noncanonical activation of NOTCH3
  • Aph1a
  • Ncstn
  • Notch3
  • Ps2
  • Psen1
  • Psen2
  • Psenen
  • Psnl1
  • Psnl2
  • Yb1
  • Ybx1
Rattus norvegicus (Norway rat)

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GlyCosmos is a member of the GlySpace Alliance together with GlyGen and Glycomics@ExPASy.

Acknowledgements

Supported by JST NBDC Grant Number JPMJND2204

Partly supported by NIH Common Fund Grant #1U01GM125267-01


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