GlyCosmos Pathways

Integrated of pathway data, containing glycoproteins and glycans obtained from Reactome and the Metabolism of carbohydrates in Escherichia coli O-antigens obtained from ECODAB. Search by pathway name, species, and protein name.

Source Last Updated
Reactome March 20, 2024
ECODAB April 1, 2019
Displaying entries 826 - 850 of 1070 in total
Pathway Name Protein Name UniProt ID Gene Symbol ▲ Organism GlyTouCan ID
Hydrolysis of LPC
  • Cpla2
  • Lypla3
  • Pla2g15
  • Pla2g4
  • Pla2g4a
  • Pla2g4b
  • Pla2g4c
  • Pla2g4d
  • Pla2g4e
  • Pla2g4f
  • Plbd1
Rattus norvegicus (Norway rat)
GABA synthesis, release, reuptake and degradation
  • Cplx1
  • Dnajc5
  • Gad1
  • Gad2
  • Gad65
  • Gad67
  • Hsc70
  • Hsc73
  • Hspa8
  • Rab3a
  • Rim1
  • Rims1
  • Sap
  • Slc32a1
  • Snap
  • Snap25
  • Stx1a
  • Stxbp1
  • Syb2
  • Syt1
  • Unc18a
  • Vamp2
  • Vgat
  • Viaat
Rattus norvegicus (Norway rat)
Signaling by Retinoic Acid
  • Cpt-1
  • Cpt1
  • Cpt1a
  • Cpt1b
  • Crabp2
  • Dlat
  • Dld
  • Fabp5
  • LOC311254
  • Nr2b1
  • Nr2b2
  • Nr2b3
  • Pdh
  • Pdha1
  • Pdha1l1
  • Pdha2
  • Pdhb
  • Pdhx
  • Pdk1
  • Pdk2
  • Pdk4
  • Rara
  • Rarb
  • Rarg
  • Rcor-1
  • Rxra
  • Rxrb
  • Rxrg
Rattus norvegicus (Norway rat)
Ficolins bind to repetitive carbohydrate structures on the target cell surface
  • Crarf
  • Fcn1
  • Fcn2
  • Fcna
  • Fcnb
  • Masp1
  • Masp2
  • Masp3
Rattus norvegicus (Norway rat)
CREB1 phosphorylation through NMDA receptor-mediated activation of RAS signaling
  • Creb-1
  • Creb1
  • Mapkapk1a
  • Rps6ka1
  • Rps6ka2
  • Rps6ka3
  • Rps6ka6
  • Rsk1
Rattus norvegicus (Norway rat)
CREB3 factors activate genes
  • Creb3
  • Creb3l3
  • Crebrf
  • Mbtps1
  • S1p
  • Ski1
Rattus norvegicus (Norway rat)
Prostanoid ligand receptors
  • Crth2
  • Gpr44
  • Ptgdr
  • Ptgdr2
  • Ptgdrl
  • Ptger1
  • Ptger2
  • Ptger3
  • Ptger4
  • Ptgfr
  • Ptgir
  • Tbxa2r
Rattus norvegicus (Norway rat)
RHO GTPases Activate NADPH Oxidases
  • Csbp1
  • Csbp2
  • Cyba
  • Cybb
  • Erk1
  • Erk2
  • Mapk
  • Mapk1
  • Mapk11
  • Mapk14
  • Mapk3
  • Mox1
  • Mrp14
  • Mrp8
  • Ncf1
  • Ncf2
  • Ncf4
  • Noh1
  • Nox1
  • Nox3
  • Noxa1
  • Noxo1
  • Pik3c3
  • Pik3r4
  • Pin1
  • Pkca
  • Pkcb
  • Pkcd
  • Pkcz
  • Prkca
  • Prkcb
  • Prkcb1
  • Prkcd
  • Prkcz
  • Prkm1
  • Prkm3
  • Rac
  • Rac1
  • Rac2
  • S100a8
  • S100a9
  • Vps34
Rattus norvegicus (Norway rat)
activated TAK1 mediates p38 MAPK activation
  • Csbp1
  • Csbp2
  • ENSRNOG00000067007
  • Ikbkg
  • Irak1
  • Irak2
  • Map2k3
  • Map2k6
  • Map3k7
  • Map3k7ip2
  • Mapk11
  • Mapk14
  • Mapkapk2
  • Mapkapk3
  • Mkk6
  • Nemo
  • Nod1
  • Nod2
  • Ripk2
  • Tab1
  • Tab2
  • Tab3
  • Traf6
Rattus norvegicus (Norway rat)
p38MAPK events
  • Csbp1
  • Csbp2
  • Hras
  • Hras1
  • Kras
  • Kras2
  • Mapk11
  • Mapk14
  • Mapkapk2
  • Mapkapk3
  • Nras
  • Ralgds
Rattus norvegicus (Norway rat)
Interleukin-3, Interleukin-5 and GM-CSF signaling
  • Csf2
  • Csf2rb
  • Csfgm
  • Il-3
  • Il-5
  • Il3
  • Il3ra
  • Il5
  • Jak2
  • Mgf
  • Msfs1
  • Pik3ca
  • Pik3cb
  • Pik3cd
  • Pik3r1
  • Pik3r2
  • Pik3r3
  • Prkaca
  • Ptph6
  • Ptpn11
  • Ptpn6
  • Shc1
  • Stat5a
  • Stat5b
  • Tec
  • Vav
  • Vav1
  • Ywhaz
Rattus norvegicus (Norway rat)
Transport of inorganic cations/anions and amino acids/oligopeptides
  • Ctns
  • Eaac1
  • Eaat1
  • Eaat2
  • Eaat3
  • Eaat4
  • Glt1
  • Slc1a1
  • Slc1a2
  • Slc1a3
  • Slc1a6
  • Slc1a7
  • Slc25a26
  • Slc32a1
  • Vgat
  • Viaat
Rattus norvegicus (Norway rat)
RUNX1 regulates transcription of genes involved in differentiation of keratinocytes
  • Cts7l2
  • Ctsk
  • Ctsl
  • Ctsl1
  • Ctsll3
  • RGD1308751
  • Serpinb13
Rattus norvegicus (Norway rat)
Regulation of RAS by GAPs
  • Cul3
  • Dab2ip
  • Hras
  • Hras1
  • Kbtbd7
  • Kras
  • Kras2
  • LOC100360645
  • LOC100360846
  • LOC100365869
  • Lmp10
  • Lmp2
  • Mecl1
  • Mss1
  • Nf1
  • Nras
  • Psma1
  • Psma2
  • Psma3
  • Psma4
  • Psma5
  • Psma6
  • Psma7
  • Psma8
  • Psmb1
  • Psmb10
  • Psmb2
  • Psmb3
  • Psmb4
  • Psmb5
  • Psmb6
  • Psmb6l
  • Psmb6l1
  • Psmb7
  • Psmb8
  • Psmb9
  • Psmc1
  • Psmc2
  • Psmc3
  • Psmc4
  • Psmc5
  • Psmc6
  • Psmd1
  • Psmd10
  • Psmd11
  • Psmd12
  • Psmd13
  • Psmd14
  • Psmd2
  • Psmd3
  • Psmd5
  • Psmd6
  • Psmd7
  • Psmd8
  • Psmd9
  • Psme1
  • Psme2
  • Psme4
  • Psmf1
  • Rasa
  • Rasa1
  • Rasa2
  • Rasa3
  • Rasa4
  • Rasal1
  • Rasal2
  • Rasal3
  • Rbx1
  • Ring12
  • Rps27a
  • Spred1
  • Spred2
  • Spred3
  • Sug1
  • Syngap1
  • Tbp1
  • Tbp7
  • Uba80
  • Ubb
  • Ubbl1
  • Ubc
  • Ubcep1
  • Ubcl1
Rattus norvegicus (Norway rat)
Vitamin C (ascorbate) metabolism
  • Cyb5
  • Cyb5a
  • Cyb5r3
  • Dia1
  • Glut1
  • Glut3
  • Gsto1
  • Gsto2
  • Slc23a1
  • Slc23a2
  • Slc2a1
  • Slc2a3
  • Svct1
  • Svct2
Rattus norvegicus (Norway rat)
Intracellular oxygen transport
  • Cygb
  • Mb
  • Ngb
  • Stap
Rattus norvegicus (Norway rat)
Negative regulators of RIG-I/MDA5 signaling
  • Cyld
  • Cyld1
  • Ikbke
  • Ips1
  • Irf3
  • LOC100360645
  • Mavs
  • Nlrx1
  • Pin1
  • Rig1
  • Rps27a
  • Tax1bp1
  • Tbk1
  • Tnfaip3
  • Uba80
  • Ubb
  • Ubbl1
  • Ubc
  • Ubcep1
  • Ubcl1
  • Visa
Rattus norvegicus (Norway rat)
Synthesis of epoxy (EET) and dihydroxyeicosatrienoic acids (DHET)
  • Cyp1a-1
  • Cyp1a-2
  • Cyp1a1
  • Cyp1a2
  • Cyp1b1
  • Cyp2c66
  • Cyp2j16
  • Cyp2j3
  • Cyp2j9
  • Ephx2
  • LOC100912265
Rattus norvegicus (Norway rat)
Synthesis of (16-20)-hydroxyeicosatetraenoic acids (HETE)
  • Cyp1a-1
  • Cyp1a-2
  • Cyp1a1
  • Cyp1a2
  • Cyp1b1
  • Cyp2c66
  • Cyp2u1
  • Cyp4a-8
  • Cyp4a12
  • Cyp4a8
  • Cyp4f4
  • LOC100912265
Rattus norvegicus (Norway rat)
Biosynthesis of maresin-like SPMs
  • Cyp1a-2
  • Cyp1a2
  • Cyp2c66
  • Cyp2d-18
  • Cyp2d-4
  • Cyp2d18
  • Cyp2d4
  • Cyp2e
  • Cyp2e-1
  • Cyp2e1
  • Cyp3a-1
  • Cyp3a-2
  • Cyp3a1
  • Cyp3a11
  • Cyp3a13
  • Cyp3a18
  • Cyp3a2
  • Cyp3a62
  • Cyp3a9
  • LOC100912265
Rattus norvegicus (Norway rat)
Aromatic amines can be N-hydroxylated or N-dealkylated by CYP1A2
  • Cyp1a-2
  • Cyp1a2
Rattus norvegicus (Norway rat)
The canonical retinoid cycle in rods (twilight vision)
  • Cyp4v2
  • Cyp4v3
  • Lrat
  • Myo7a
  • Rbp-1
  • Rbp1
  • Rbp3
  • Rbp4
  • Rdh10
  • Rdh11
  • Rdh12
  • Rho
  • Rlbp1
  • Rpe65
  • Stra6
  • Tt
  • Ttr
Rattus norvegicus (Norway rat)
Reelin signalling pathway
  • Dab1
  • Fyn
  • Reln
  • Ruk
  • Seta
  • Sh3kbp1
  • Vldlr
Rattus norvegicus (Norway rat)
Effects of PIP2 hydrolysis
  • Dagk
  • Dagk1
  • Dagk2
  • Dagk3
  • Dagk6
  • Dgka
  • Dgkb
  • Dgkd
  • Dgke
  • Dgkg
  • Dgkh
  • Dgki
  • Dgkk
  • Dgkq
  • Dgkz
  • Insp3r
  • Itpr1
  • Itpr2
  • Itpr3
  • Pkcd
  • Pkce
  • Pkch
  • Pkcq
  • Prkcd
  • Prkce
  • Prkch
  • Prkcq
  • Trpc3
  • Trpc7
  • Trrp3
Rattus norvegicus (Norway rat)
Elastic fibre formation
  • Dance
  • Eln
  • Fbln5
  • Fbn1
  • Fur
  • Furin
  • Itga5
  • Itgav
  • Itgb1
  • Itgb3
  • Itgb6
  • Lox
  • Loxl1
  • Loxl2
  • Loxl3
  • Loxl4
  • Mfap2
  • Mfap5
  • Pcsk3
Rattus norvegicus (Norway rat)

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GlyCosmos is a member of the GlySpace Alliance together with GlyGen and Glycomics@ExPASy.

Acknowledgements

Supported by JST NBDC Grant Number JPMJND2204

Partly supported by NIH Common Fund Grant #1U01GM125267-01


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Last updated: August 19, 2024