GlyCosmos Pathways

Integrated of pathway data, containing glycoproteins and glycans obtained from Reactome and the Metabolism of carbohydrates in Escherichia coli O-antigens obtained from ECODAB. Search by pathway name, species, and protein name.

Source Last Updated
Reactome March 20, 2024
ECODAB April 1, 2019
Displaying entries 626 - 650 of 1070 in total
Pathway Name Protein Name UniProt ID ▲ Gene Symbol Organism GlyTouCan ID
Ion influx/efflux at host-pathogen interface
  • Atox1
  • Atp7a
  • Bcg
  • Mnk
  • Nramp1
  • Pdzd11
  • Rah1
  • Slc11a1
Rattus norvegicus (Norway rat)
Lewis blood group biosynthesis
  • B3galt1
  • B3galt2
  • B3galt4
  • B3galt5
  • B4galnt2
  • Ftb
  • Fut10
  • Fut11
  • Fut2
  • Fut4
  • Fut7
  • Fut9
  • Rfuc-t
  • Sec1
  • Siat10
  • Siat4c
  • Siat6
  • St3gal3
  • St3gal4
  • St3gal6
  • St6galnac6
Rattus norvegicus (Norway rat)
Asparagine N-linked glycosylation
  • Asgr-1
  • Asgr-2
  • Asgr1
  • Asgr2
  • B4galnt2
  • Umod
Rattus norvegicus (Norway rat)
Transport of inorganic cations/anions and amino acids/oligopeptides
  • Ctns
  • Eaac1
  • Eaat1
  • Eaat2
  • Eaat3
  • Eaat4
  • Glt1
  • Slc1a1
  • Slc1a2
  • Slc1a3
  • Slc1a6
  • Slc1a7
  • Slc25a26
  • Slc32a1
  • Vgat
  • Viaat
Rattus norvegicus (Norway rat)
SEMA3A-Plexin repulsion signaling by inhibiting Integrin adhesion
  • Farp2
  • Fyn
  • Nrp1
  • Pip5k1c
  • Plxna1
  • Plxna2
  • Plxna3
  • Plxna4
  • Plxna4a
  • Sema3a
  • Tln1
Rattus norvegicus (Norway rat)
GRB2:SOS provides linkage to MAPK signaling for Integrins
  • Apbb1ip
  • Ash
  • Fak
  • Fak1
  • Fga
  • Fgb
  • Fgg
  • Fn1
  • Grb2
  • Itga2b
  • Itgb3
  • Krev1
  • Ptk2
  • Rap1a
  • Rap1b
  • Sos1
  • Src
  • Tln1
Rattus norvegicus (Norway rat)
Integrin signaling
  • Akt1
  • Apbb1ip
  • Cgef2
  • Csk
  • Epac
  • Epac1
  • Epac2
  • Fak
  • Fak1
  • Fga
  • Fgb
  • Fgg
  • Fn1
  • Itga2b
  • Itgb3
  • Krev1
  • Pdk1
  • Pdpk1
  • Ptk2
  • Ptpn1
  • Rap1a
  • Rap1b
  • Rapgef3
  • Rapgef4
  • Rasgrp
  • Rasgrp1
  • Rasgrp2
  • Shc1
  • Src
  • Syk
  • Tln1
Rattus norvegicus (Norway rat)
p130Cas linkage to MAPK signaling for integrins
  • Apbb1ip
  • Bcar1
  • Cas
  • Crk
  • Crkas
  • Crko
  • Fak
  • Fak1
  • Fga
  • Fgb
  • Fgg
  • Fn1
  • Itga2b
  • Itgb3
  • Krev1
  • Ptk2
  • Rap1a
  • Rap1b
  • Src
  • Tln1
Rattus norvegicus (Norway rat)
Zinc influx into cells by the SLC39 gene family
  • Slc39a1
  • Slc39a14
  • Slc39a2
  • Slc39a3
  • Slc39a4
  • Slc39a6
  • Slc39a8
  • Zip3
  • Zip4
  • Zip6
  • Zip8
Rattus norvegicus (Norway rat)
Regulation of RUNX1 Expression and Activity
  • Aml1
  • Cbfa2
  • Cbfb
  • Ccnd1
  • Ccnd2
  • Ccnd3
  • Cdk6
  • Pml
  • Ptpn11
  • Runx1
  • Vin-1
Rattus norvegicus (Norway rat)
Trafficking of AMPA receptors
  • Akap150
  • Akap5
  • Cacng2
  • Cacng3
  • Cacng4
  • Cacng8
  • Camk2a
  • Camk2b
  • Camk2d
  • Camk2g
  • Dlg1
  • Dlg4
  • Dlgh1
  • Dlgh4
  • Epb4.1l1
  • Epb41l1
  • GluA1
  • GluA3
  • Glur1
  • Glur3
  • Glur4
  • Gria1
  • Gria3
  • Gria4
  • Mdm2
  • Myo6
  • Psd95
  • Stg
Rattus norvegicus (Norway rat)
Gap junction degradation
  • Ap2m1
  • Clta
  • Cltb
  • Cltc
  • Cxn-43
  • Dab2
  • Dnm
  • Dnm1
  • Dnm2
  • Doc2
  • Dyn2
  • Gja1
  • Myo6
Rattus norvegicus (Norway rat)
Release of Hh-Np from the secreting cell
  • Dhh
  • Disp2
  • Gpc5
  • Ihh
  • Notum
  • Scube2
  • Shh
  • Vhh-1
Rattus norvegicus (Norway rat)
Orexin and neuropeptides FF and QRFP bind to their respective receptors
  • Gpr147
  • Gpr74
  • Hcrt
  • Hcrtr1
  • Hcrtr2
  • Npff
  • Npff1
  • Npff2
  • Npffr1
  • Npffr2
  • Npgpr
  • Ox
  • P518
  • Ppox
  • Qrfp
  • Qrfprl
  • RGD1560028
Rattus norvegicus (Norway rat)
Acyl chain remodelling of PE
  • A-C1
  • Abhd4
  • Cpla2
  • Grcc3f
  • H-rev107
  • Hrasls
  • Hrasls3
  • Hrasls5
  • Hrasrs
  • Hrev107
  • Hrlp5
  • Lpcat3
  • Lpcat4
  • Mboat1
  • Mboat2
  • Mboat5
  • Oact2
  • Oact5
  • Pla2g10
  • Pla2g12a
  • Pla2g16
  • Pla2g1b
  • Pla2g2a
  • Pla2g2d
  • Pla2g2f
  • Pla2g3
  • Pla2g4
  • Pla2g4a
  • Pla2g4b
  • Pla2g4c
  • Pla2g4d
  • Pla2g4e
  • Pla2g4f
  • Pla2g5
  • Pla2g6
  • Pla2r1
  • Plaat1
  • Plaat3
  • Plaat5
  • Plbd1
  • Pnpla8
  • Pnpla9
  • RLP-2
  • Rlp-1
  • Rlp-3
Rattus norvegicus (Norway rat)
Transport of fatty acids
  • Apod
  • Fatp
  • Fatp1
  • Lcn12
  • Lcn9
  • Slc27a1
  • Slc27a4
  • Slc27a6
  • Vegp
  • Vegp1
  • Vegp2
Rattus norvegicus (Norway rat)
Sphingolipid catabolism
  • Acer1
  • Acer2
  • Acer3
  • Aldh3a2
  • Aldh3b1
  • Aldh3b2
  • Aldh4
  • Lpp1
  • Lpp2
  • Lpp3
  • Plpp1
  • Plpp2
  • Plpp3
  • Ppap2a
  • Ppap2b
  • Ppap2c
  • Sgpl1
  • Sgpp1
  • Sgpp2
  • Spl
Rattus norvegicus (Norway rat)
Eukaryotic Translation Elongation
  • Eef1a
  • Eef1a1
  • Eef1b2
  • Eef1d
  • Eef1g
Rattus norvegicus (Norway rat)
Nuclear signaling by ERBB4
  • AABR07043897.1
  • Aph1a
  • Esr
  • Esr1
  • Estr
  • Mgf
  • Ncstn
  • Nr3a1
  • Ps2
  • Psen1
  • Psen2
  • Psenen
  • Psnl1
  • Psnl2
  • Src
  • Stat5a
  • Wwox
  • Yap
  • Yap1
  • Yap65
Rattus norvegicus (Norway rat)
Cholesterol biosynthesis
  • AABR07021955.1
  • Acat2
  • Arv1
  • Cyp51
  • Cyp51a1
  • Dhcr24
  • Erg1
  • Fdft1
  • Fdps
  • Ggps1
  • Hmgcr
  • Hmgcs
  • Hmgcs1
  • Hsd17b7
  • Idi1
  • Idi2l3
  • Lbr
  • Lss
  • Mpd
  • Msmo1
  • Mvd
  • Mvk
  • Nsdhl
  • Osc
  • Plpp6
  • Pmvk
  • RGD1564999
  • Sc4mol
  • Sqle
  • Srebf1
  • Srebf2
  • Srebp1
Rattus norvegicus (Norway rat)
Ketone body catabolism
  • Acat1
  • Bdh
  • Bdh1
  • Oxct
  • Oxct1
  • Oxct2a
  • Scot
Rattus norvegicus (Norway rat)
G beta:gamma signalling through PI3Kgamma
  • Akt1
  • Akt2
  • Akt3
  • Arha
  • Arha2
  • Gnb1
  • Gnb2
  • Gnb3
  • Gnb4
  • Gnb5
  • Gng10-ps1
  • Gng11
  • Gng12
  • Gng3
  • Gng4
  • Gng5
  • Gng5-ps4
  • Gng7
  • Gng8
  • Gng9
  • Gngt1
  • Gngt11
  • Gngt5
  • Gngt7
  • Gngt9
  • Pdk1
  • Pdpk1
  • Pik3cg
  • Pik3r5
  • Pik3r6
  • Rhoa
Rattus norvegicus (Norway rat)
Thromboxane signalling through TP receptor
  • Aamp
  • Gna11
  • Gna13
  • Gna14
  • Gna15
  • Gnaq
  • Gnb1
  • Gnb2
  • Gnb3
  • Gnb4
  • Gnb5
  • Gng10-ps1
  • Gng11
  • Gng12
  • Gng3
  • Gng4
  • Gng5
  • Gng5-ps4
  • Gng7
  • Gng8
  • Gng9
  • Gngt1
  • Gngt11
  • Gngt5
  • Gngt7
  • Gngt9
  • Tbxa2r
Rattus norvegicus (Norway rat)
G-protein activation
  • Gna11
  • Gna14
  • Gna15
  • Gnaq
  • Gnb1
  • Gnb2
  • Gnb3
  • Gnb4
  • Gnb5
  • Gng10-ps1
  • Gng11
  • Gng12
  • Gng3
  • Gng4
  • Gng5
  • Gng5-ps4
  • Gng7
  • Gng8
  • Gng9
  • Gngt1
  • Gngt11
  • Gngt5
  • Gngt7
  • Gngt9
  • Oprm1
  • Pdyn
  • Pomc
  • Pomc2
  • Ror-b
Rattus norvegicus (Norway rat)
Thrombin signalling through proteinase activated receptors (PARs)
  • Arrb1
  • Arrb2
  • Erk1
  • Erk2
  • F2
  • F2r
  • F2rl2
  • F2rl3
  • Gna11
  • Gna14
  • Gna15
  • Gnaq
  • Gnb1
  • Gnb2
  • Gnb3
  • Gnb4
  • Gnb5
  • Gng10-ps1
  • Gng11
  • Gng12
  • Gng3
  • Gng4
  • Gng5
  • Gng5-ps4
  • Gng7
  • Gng8
  • Gng9
  • Gngt1
  • Gngt11
  • Gngt5
  • Gngt7
  • Gngt9
  • Mapk
  • Mapk1
  • Mapk3
  • Par1
  • Par3
  • Par4
  • Prkm1
  • Prkm3
  • Src
Rattus norvegicus (Norway rat)

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GlyCosmos is a member of the GlySpace Alliance together with GlyGen and Glycomics@ExPASy.

Acknowledgements

Supported by JST NBDC Grant Number JPMJND2204

Partly supported by NIH Common Fund Grant #1U01GM125267-01


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Last updated: August 19, 2024