GlyCosmos Portal

GlyCosmos Pathways

Integrated of pathway data, containing glycoproteins and glycans obtained from Reactome and the Metabolism of carbohydrates in Escherichia coli O-antigens obtained from ECODAB. Search by pathway name, species, and protein name.

Source	Last Updated
Reactome	March 20, 2024
ECODAB	April 1, 2019

Displaying entries **101 - 125** of **1070** in total

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Pathway Name	Protein Name	UniProt ID	Gene Symbol ▲	Organism
Macroautophagy	5'-AMP-activated protein kinase catalytic subunit alpha-1 5'-AMP-activated protein kinase subunit beta-1 5'-AMP-activated protein kinase subunit beta-2 5'-AMP-activated protein kinase subunit gamma-1 Autophagy and beclin 1 regulator 1 Autophagy protein 5 Autophagy related 13 Autophagy related 16-like 1 Autophagy-related protein 101 Autophagy-related protein 9 Autophagy-related protein 9A Beclin 1-associated autophagy-related key regulator Beclin-1 Charged multivesicular body protein 2B Charged multivesicular body protein 2a Charged multivesicular body protein 3 Charged multivesicular body protein 4B Charged multivesicular body protein 4c Charged multivesicular body protein 6 Charged multivesicular body protein 7 Cysteine protease ATG4B Cysteine protease Cysteine protease Cysteine protease Dynein light chain 1, cytoplasmic Dynein light chain 2, cytoplasmic GTP-binding protein Rheb Gamma-aminobutyric acid receptor-associated protein-like 1 Gamma-aminobutyric acid receptor-associated protein-like 2 Gamma-aminobutyric acid receptor-associated protein Hamartin Microtubule-associated proteins 1A/1B light chain 3A Microtubule-associated proteins 1A/1B light chain 3B Myotubularin related protein 14 Myotubularin-related protein 3 Neutral amino acid transporter 9 Phosphatidylinositol 3-kinase catalytic subunit type 3 Phosphoinositide 3-kinase regulatory subunit 4 Protein kinase AMP-activated non-catalytic subunit gamma 2 Protein kinase AMP-activated non-catalytic subunit gamma 3 RB1-inducible coiled-coil 1 Ragulator complex protein LAMTOR1 Ragulator complex protein LAMTOR3 Ragulator complex protein LAMTOR4 Ragulator complex protein LAMTOR5 Ras-related GTP-binding protein A Ras-related GTP-binding protein B Ras-related GTP-binding protein Ras-related GTP-binding protein Regulatory associated protein of MTOR, complex 1 Roadblock/LAMTOR2 domain-containing protein Serine/threonine-protein kinase mTOR Serine/threonine-protein kinase Target of rapamycin complex subunit LST8 Tuberin UV radiation resistance associated Ubiquitin-like modifier-activating enzyme ATG7 Ubiquitin-like protein ATG12 Ubiquitin-like-conjugating enzyme ATG10 Ubiquitin-like-conjugating enzyme ATG3 WD repeat domain phosphoinositide-interacting protein 2 WD repeat domain phosphoinositide-interacting protein 3 WD repeat domain phosphoinositide-interacting protein 4 WD repeat domain, phosphoinositide interacting 1	A0A0G2K9U6 A0A0G2QC33 A0A140UHX4 A0A8I5Y513 A0A8I5ZP83 A0A8I5ZTL1 A0A8I5ZXZ8 A0A8I5ZY10 A0A8I6AB52 A0A8I6ADH7 A0A8I6AQ75 B1H274 B2RZ38 D3ZA45 D3ZDU2 D3ZF11 D3ZHK4 D3ZKE1 D3ZMA2 D3ZMG0 D4A4K3 D4A7E4 D4A7H9 D4ABD5 D4AD29 F1LNQ2 M0R5T6 O88763 P0C0R5 P42346 P49816 P54645 P60517 P60522 P63170 P80385 P80386 Q0D2L6 Q0VGK0 Q2MCP5 Q2TBJ5 Q3B8Q3 Q3MQ06 Q569C1 Q5FWU3 Q5PQT2 Q5U204 Q5U2Y0 Q62625 Q62639 Q63486 Q63487 Q641Y5 Q6AY57 Q6AY69 Q6AZ50 Q6P791 Q6XVN8 Q78P75 Q8CGS4 Q91XJ1 Q9QZH4 Q9Z136 Q9Z2K5	AABR07040864.1 Ambra1 Ampk1 Apg12l Apg3l Apg7l Apg9l1 Atg10 Atg101 Atg12 Atg13 Atg14 Atg14L Atg16l1 Atg3 Atg4a Atg4al1 Atg4b Atg4c Atg4d Atg5 Atg7 Atg9a Atg9b Becn1 Chmp2a Chmp2b Chmp3 Chmp4b Chmp4c Chmp6 Chmp7 Dlc2 Dncl1 Dnclc1 Dynll1 Dynll2 ENSRNOG00000066475 Frap1 Gabarap Gabarapl1 Gabarapl2 Gbl Gec1 Gef2 LOC678769 Lamtor1 Lamtor3 Lamtor4 Lamtor5 Lst8 Map1alc3 Map1lc3 Map1lc3a Map1lc3b Map2k1ip1 Mlst8 Mtmr14 Mtmr3 Mtor Pik3c3 Pik3r4 Pin Prkaa1 Prkab1 Prkab2 Prkag1 Prkag2 Prkag3 Raft1 Rb1cc1 Rheb Rptor RragB Rraga Rragc Rragc_predicted Rragd Slc38a9 Tsc1 Tsc2 Ulk1 Uvrag Vps24 Vps34 WDR45L Wdr45 Wdr45b Wdr45l Wdr45l_predicted Wipi1 Wipi2 Wipi4	Rattus norvegicus (Norway rat)
Synthesis of active ubiquitin: roles of E1 and E2 enzymes	Cell division cycle 34, ubiqiutin conjugating enzyme E2 ubiquitin-conjugating enzyme E2 ubiquitin-conjugating enzyme E2 ubiquitin-conjugating enzyme E2 ubiquitin-conjugating enzyme E2 ubiquitin-conjugating enzyme E2 ubiquitin-conjugating enzyme E2 ubiquitin-conjugating enzyme N-terminal E2 ubiquitin-conjugating enzyme Polyubiquitin-B Polyubiquitin-C Ubiquitin B-like Ubiquitin carboxyl-terminal hydrolase 7 Ubiquitin carboxyl-terminal hydrolase isozyme L3 Ubiquitin carboxyl-terminal hydrolase Ubiquitin conjugating enzyme E2 Q2 Ubiquitin-conjugating enzyme E2 B Ubiquitin-conjugating enzyme E2 C Ubiquitin-conjugating enzyme E2 D1 Ubiquitin-conjugating enzyme E2 D2 Ubiquitin-conjugating enzyme E2 G1 Ubiquitin-conjugating enzyme E2 S Ubiquitin-conjugating enzyme E2 Z Ubiquitin-conjugating enzyme E2A Ubiquitin-conjugating enzyme E2R 2 Ubiquitin-like modifier activating enzyme 6 Ubiquitin-like modifier-activating enzyme 1 Ubiquitin-ribosomal protein eS31 fusion protein ubiquitinyl hydrolase 1	A0A8I5YBM5 A0A8I6A356 A0A8I6A5Y3 A0A8I6A8J6 A0A8J8Y4N8 B0BMY6 B5DFI8 D3Z8W5 D3ZDK2 D3ZUW6 D3ZVQ0 D4A1G2 D4A453 D4A8H3 F1M3L4 F7F5A1 G3V6M7 M0R4P9 M0R6B6 P0CG51 P62255 P62839 P62982 P63149 Q3B7D1 Q4VSI4 Q5U300 Q63429 Q91Y78	AABR07041109.1 Cdc34 Fam105b Hausp LOC100360645 LOC100362554 LOC100366017 LOC64038 NEWGENE_1308361 Otulin Rad6b Rps27a Uba1 Uba6 Uba80 Ubb Ubbl1 Ubc Ubc4 Ubc7 Ubcep1 Ubch4 Ubch5b Ubcl1 Ube1 Ube2a Ube2b Ube2c Ube2d1 Ube2d2 Ube2e1 Ube2e3 Ube2g Ube2g1 Ube2g2 Ube2h Ube2k Ube2l3 Ube2q2 Ube2r2 Ube2s Ube2t Ube2w Ube2z Uchl3 Usp5 Usp7	Rattus norvegicus (Norway rat)
RAB GEFs exchange GTP for GDP on RABs	14-3-3 protein epsilon ALS2 C-terminal like Alsin Ankyrin repeat domain 27 CCZ1 homolog B, vacuolar protein trafficking and biogenesis associated DENN domain containing 1A DENN domain containing 1B DENN domain containing 1C DENN domain containing 2A DENN domain containing 2B DENN domain containing 2C DENN domain containing 2D DENN domain containing 3 DENN domain containing 4A DENN domain containing 4B DENN domain containing 4C DENN domain containing 5B DENN domain containing 6A DENN domain containing 6B DENN domain-containing protein 5A GTPase activating protein and VPS9 domains 1 Guanine nucleotide exchange factor for Rab-3A HPS1, biogenesis of lysosomal organelles complex 3 subunit 1 HPS4, biogenesis of lysosomal organelles complex 3 subunit 2 MAP kinase-activating death domain protein Protein RIC1 homolog RAB guanine nucleotide exchange factor 1 RAB39A, member RAS oncogene family RAB6B, member RAS oncogene family RAB9B, member RAS oncogene family RAC-alpha serine/threonine-protein kinase RAC-beta serine/threonine-protein kinase RAC-gamma serine/threonine-protein kinase RGP1 homolog, RAB6A GEF complex partner 1 Rab GDP dissociation inhibitor alpha Rab GDP dissociation inhibitor beta Rab proteins geranylgeranyltransferase component A 1 Rab proteins geranylgeranyltransferase component A Rab-3A-interacting protein Rab3 GTPase-activating protein catalytic subunit (Fragments) Rab3 GTPase-activating protein non-catalytic subunit Rab7b, member RAS oncogene family Ras and Rab interactor 1 Ras and Rab interactor 2 Ras and Rab interactor 3 Ras and Rab interactor-like Ras-related protein Rab-10 Ras-related protein Rab-12 Ras-related protein Rab-13 Ras-related protein Rab-14 Ras-related protein Rab-18 Ras-related protein Rab-1A Ras-related protein Rab-1B Ras-related protein Rab-21 Ras-related protein Rab-27A Ras-related protein Rab-27B Ras-related protein Rab-31 Ras-related protein Rab-35 Ras-related protein Rab-3A Ras-related protein Rab-5A Ras-related protein Rab-6A Ras-related protein Rab-7a Ras-related protein Rab-8A Ras-related protein Rab-8B Ras-related protein Rab-9A Ras-related protein Rab SET binding factor 1 SET binding factor 2 Serine/threonine-protein kinase Trafficking protein particle complex 2 Trafficking protein particle complex subunit 10 Trafficking protein particle complex subunit 11 Trafficking protein particle complex subunit 12 Trafficking protein particle complex subunit 13 Trafficking protein particle complex subunit 1 Trafficking protein particle complex subunit 2-like protein Trafficking protein particle complex subunit 3 Trafficking protein particle complex subunit 4 Trafficking protein particle complex subunit 5 Trafficking protein particle complex subunit 6A Trafficking protein particle complex subunit 6B Trafficking protein particle complex subunit 8 Trafficking protein particle complex subunit 9 Trafficking protein particle complex subunit Vacuolar fusion protein MON1 homolog Vacuolar fusion protein MON1 homolog small monomeric GTPase small monomeric GTPase	A0A0G2JT78 A0A0G2JUB1 A0A0G2K089 A0A0G2K0G9 A0A0G2K1K5 A0A0G2K6J1 A0A0G2K7U7 A0A8I5ZRE4 A0A8I5ZT12 A0A8I5ZYV2 A0A8I6A009 A0A8I6A6X2 A0A8I6AAJ7 A0A8I6ACY0 A0A8I6AEI1 A0A8I6AEV4 A0A8I6ANG7 A0A8I6G3S1 A0A8J8YPH6 A1L1J8 B0BNE3 B0BNK1 B1WC06 B2RYU6 D3Z8F6 D3ZAE3 D3ZE49 D3ZES2 D3ZLQ1 D3ZMG0 D3ZP15 D3ZP73 D3ZX30 D3ZZP2 D4A224 D4A2H4 D4A3S0 D4A518 D4A544 D4A6C4 D4A7A8 E9PU02 F1LTT7 F1M9W9 F1MAQ4 G3V631 G3V7Q0 M0RAP5 M0RBQ8 M0RC99 O08873 P09527 P0C5Y8 P10536 P23640 P35280 P35281 P35284 P35286 P37727 P47196 P47197 P50398 P50399 P61107 P62260 P63012 P69735 P70550 P97680 Q2KMM2 Q5BJL8 Q5EB77 Q5M887 Q5U1Z0 Q5U1Z2 Q5U316 Q62739 Q63483 Q63484 Q69BT7 Q6AXT5 Q6GQP4 Q6NYB7 Q99NH3 Q99P74 Q99P75 Q9WVB1	AABR07042915.1 Akt1 Akt2 Akt3 Als2 Als2cl Ankrd27 Ccz1 Ccz1b Chm Chml Dennd1a Dennd1b Dennd1c Dennd2a Dennd2b Dennd2c Dennd2d Dennd3 Dennd4a Dennd4b Dennd4c Dennd5a Dennd5b Dennd6a Dennd6b Gapvd1 Gdi1 Gdi2 Gdi3 Grab Hps1 Hps4 LOC100909916 Madd Mon1a Mon1b RGD1310016 RGD1562639 RGD1564492 Rab1 Rab10 Rab12 Rab13 Rab14 Rab18 Rab1A Rab1b Rab21 Rab27 Rab27a Rab27b Rab31 Rab35 Rab38 Rab39a Rab3a Rab3gap Rab3gap1 Rab3gap2 Rab3il1 Rab3ip Rab5a Rab5b Rab5c Rab6 Rab6a Rab6b Rab7 Rab7a Rab7b Rab8 Rab8a Rab8b Rab9 Rab9a Rab9b Rabgdia Rabgef1 Rabin3 Rabin8 Rep1 Rgp1 Ric1 Rin1 Rin2 Rin3 Rinl Sbdn Sbf1 Sbf2 Trappc1 Trappc10 Trappc11 Trappc12 Trappc13 Trappc2 Trappc2l Trappc2ll1 Trappc3 Trappc4 Trappc5 Trappc6a Trappc6b Trappc8 Trappc9 Ttc15 Ulk1 Ywhae	Rattus norvegicus (Norway rat)
COPII-mediated vesicle transport	Alpha-1-antiproteinase Alpha-soluble NSF attachment protein Amphiregulin Ankyrin repeat domain 28 BET1 homolog Beta-soluble NSF attachment protein CD59 glycoprotein Casein kinase I isoform delta Cathepsin Z Coagulation factor VIII Collagen type VII alpha 1 chain Cornichon family AMPA receptor auxiliary protein 1 Dipeptidyl peptidase 1 Folate receptor alpha Gamma-soluble NSF attachment protein General vesicular transport factor p115 Glutamate receptor 1 Golgi SNAP receptor complex member 2 Golgi reassembly-stacking protein 1 Golgin subfamily A member 2 Guanine nucleotide-exchange factor SEC12 Lectin, mannose-binding 2 Multiple coagulation factor deficiency protein 2 homolog Protein ERGIC-53-like Protein ERGIC-53 Protein SEC13 homolog Protein cornichon homolog 2 Protein cornichon homolog 3 Protein phosphatase 6, regulatory subunit 3 Protein transport protein SEC23 Protein transport protein Sec16B Protein transport protein Sec31A Protein transport protein sec16 Protransforming growth factor alpha Ras-related protein Rab-1A Ras-related protein Rab-1B SEC22 homolog C, vesicle trafficking protein SEC23 interacting protein SEC24 homolog A, COPII coat complex component SEC24 homolog B, COPII coat complex component SEC24 homolog C, COPII coat complex component SEC24 homolog D, COPII coat complex component Sec1 family domain-containing protein 1 Serine/threonine-protein phosphatase 6 catalytic subunit Small COPII coat GTPase SAR1B Synaptobrevin homolog YKT6 Syntaxin-17 Syntaxin-5 Trafficking from ER to golgi regulator Trafficking protein particle complex 2 Trafficking protein particle complex subunit 10 Trafficking protein particle complex subunit 1 Trafficking protein particle complex subunit 2-like protein Trafficking protein particle complex subunit 3 Trafficking protein particle complex subunit 4 Trafficking protein particle complex subunit 5 Trafficking protein particle complex subunit 6A Trafficking protein particle complex subunit 6B Trafficking protein particle complex subunit 9 Trafficking protein particle complex subunit Transmembrane emp24 domain-containing protein 10 Transmembrane emp24 domain-containing protein 2 Vesicle-fusing ATPase Vesicle-trafficking protein SEC22a Vesicle-trafficking protein SEC22b	A0A0G2K112 A0A0G2K350 A0A0G2K626 A0A0G2K9K4 A0A8I5ZRE4 A0A8I5ZTA3 A0A8I6GHK6 B0BNE3 B2RYU6 B5DFC3 D0Q0Y7 D3ZE04 D3ZEB1 D3ZES2 D3ZW15 D3ZZA8 D4A3S0 E9PU02 F1MAH5 F1MAQ4 F7FPK8 G3V8M6 G3V8Q8 G3V9S9 M0R3S2 O35165 O35254 P01134 P10536 P17475 P19490 P24338 P27274 P41542 P54921 P80067 P85969 Q06486 Q08851 Q2KMM2 Q4KM74 Q5BJL8 Q5BJU5 Q5EGY4 Q5FB95 Q5HZY2 Q5U1Z2 Q5XFW8 Q62839 Q62896 Q62902 Q62991 Q63524 Q63584 Q642F4 Q64620 Q69BT7 Q6NYB7 Q75N33 Q8K5B3 Q9QUL6 Q9R1T3 Q9WTV0 Q9Z158 Q9Z2Q1	AABR07042915.1 Ankrd28 Areg Bet1 Cd59 Cnih1 Cnih2 Cnih3 Col7a1 Csnk1d Ctsc Ctsy Ctsz Erg1 Ergic53 Ergl F8 Folr1 GluA1 Glur1 Golga2 Gorasp1 Gosr2 Grasp65 Gria1 Gs27 Hckid LOC100909916 Lman1 Lman1l Lman2 Lztr2 Mcfd2 Napa Napb Napg Nsf Ppp6c Ppp6r3 Ppp6r3-ps1 Ppv Preb RGD1564492 Ra410 Rab1 Rab1A Rab1b Rgpr Rnp24 Saps3-ps1 Sar1b Sbdn Scfd1 Sdgf Sdnsf Sec12 Sec13 Sec13l1 Sec16a Sec16b Sec22a Sec22b Sec22c Sec22l1 Sec22l2 Sec23a Sec23ip Sec24a Sec24b Sec24c Sec24d Sec31a Sec31l1 Serpina1 Sly1 Snap Snapa Snapb Stx17 Stx5 Stx5a Stxbp1l2 Tfg Tgfa Tmed10 Tmed2 Tmp21 Trappc1 Trappc10 Trappc2 Trappc2l Trappc2ll1 Trappc3 Trappc4 Trappc5 Trappc6a Trappc6b Trappc9 Uso1 Vap1 Vdp Ykt6	Rattus norvegicus (Norway rat)
Nuclear signaling by ERBB4	Estrogen receptor Gamma-secretase subunit APH-1 Gamma-secretase subunit PEN-2 Nicastrin Presenilin-1 Presenilin-2 Proto-oncogene tyrosine-protein kinase Src Signal transducer and activator of transcription 5A Transcriptional coactivator YAP1 WW domain-containing oxidoreductase	A0A8I6AEI3 F7EYZ3 O88777 P06211 P97887 Q2EJA0 Q62771 Q6QI68 Q8CGU6 Q9WUD9	AABR07043897.1 Aph1a Esr Esr1 Estr Mgf Ncstn Nr3a1 Ps2 Psen1 Psen2 Psenen Psnl1 Psnl2 Src Stat5a Wwox Yap Yap1 Yap65	Rattus norvegicus (Norway rat)
Formation of the cornified envelope	Caspase 14 Chymotrypsin-like elastase family member 2A Corneodesmosin Desmocollin 1 Desmocollin 2 Desmocollin 3 Desmoglein 1 Desmoglein 2 Desmoglein 3 Desmoglein-4 Desmoplakin Envoplakin Junction plakoglobin Kallikrein k Kallikrein l Kallikrein m Kallikrein related-peptidase 5 Kallikrein-8 Kazrin Lipase Lipase Lipase P53 apoptosis effector related to PMP22 Periplakin Plakophilin 1 Plakophilin 3 Plakophilin 4 Plakophilin-2 Protein-glutamine gamma-glutamyltransferase K Repetin Serine peptidase inhibitor, Kazal type 5 Serine protease inhibitor Kazal-type 6 Small proline-rich protein 3 Stefin A2-like 3	A0A0G2K230 A0A0G2K430 A0A0G2KA90 A0A8I5ZKH8 A0A8I6A880 A0A8I6AG90 A0A8I6GLK6 B2GVC0 D3ZD22 D3ZET2 D3ZHQ6 D3ZJ50 D3ZJ70 D3ZJR7 D3ZL74 D3ZM39 D3ZRA7 D3ZRF0 D3ZY51 D3ZZ65 D4A5T8 D4A9L7 D4AA61 F1LMV6 F1M091 F1M7L9 G3V765 O88780 P00774 P23606 Q5FWS6 Q6IE47 Q6P0K8 Q6W3B0	AABR07044375.1 Bsp1 Casp14 Cdsn Cela2a Dsc1 Dsc2 Dsc3 Dsg1 Dsg2 Dsg3 Dsg4 Dsp Ela2 Ela2a Evpl Jup Kaz Kazn Klk12 Klk13 Klk14 Klk5 Klk8 Klnk Klnl Klnm Lipk Lipm Lipn Nrpn Perp Pg Pkp1 Pkp2 Pkp3 Pkp4 Ppl Prss19 Rptn Spink5 Spink5l1 Spink6 Sprr3 Stfa2l3 Tgm1	Rattus norvegicus (Norway rat)
ECM proteoglycans	Aa1018 Aggrecan core protein Agrin Biglycan Brevican core protein Cartilage oligomeric matrix protein Decorin Dentin matrix acidic phosphoprotein 1 Dentin sialophosphoprotein Hyaluronan and proteoglycan link protein 1 Integrin alpha-7 Integrin beta-1 Integrin beta-3 Integrin beta-6 Integrin beta Integrin subunit alpha 2 Integrin subunit alpha 2b Integrin subunit alpha 8 Integrin subunit alpha 9 Integrin subunit alpha V Integrin subunit alpha X Matrilin 1 Matrilin 3 Matrilin 4 Neurocan core protein Plasminogen activator inhibitor 1 SPARC Tenascin C Tenascin N Tenascin-R Tenascin-X Versican core protein (Fragments)	A0A0G2JYF9 A0A0G2K470 A0A8I5ZWP3 A0A8I6AJ44 A0A8I6AQL1 A0A8I6ARC1 A0A8I6GGN2 D3ZK14 D3ZMS3 D3ZN51 F1LZX9 F7F1E3 P03994 P07897 P16975 P20961 P25304 P35444 P47853 P49134 P55067 P55068 P98193 Q01129 Q05546 Q5XI24 Q62598 Q63258 Q6AYF4 Q7TQ11 Q8R2H2 Q9ERB4	AABR07044388.2 Acan Agc Agc1 Agrin Agrn Bcan Behab Bgn Comp Crtl1 Cspg2 Cspg3 Dcn Dmp1 Dspp Hapln1 Itga2 Itga2b Itga7 Itga8 Itga9 Itgav Itgax Itgb1 Itgb3 Itgb5 Itgb6 Matn1 Matn3 Matn4 Ncan Pai1 Planh1 Rdsp2 Serpine1 Sparc Tnc Tnn Tnr Tnxb Vcan Vtn	Rattus norvegicus (Norway rat)
Downstream TCR signaling	3-phosphoinositide-dependent protein kinase 1 B-cell lymphoma/leukemia 10 Caspase recruitment domain family, member 11 Histocompatibility 2, class II antigen E alpha Ig-like domain-containing protein Ig-like domain-containing protein Ig-like domain-containing protein Ig-like domain-containing protein Inhibitor of nuclear factor kappa-B kinase subunit alpha Inhibitor of nuclear factor kappa-B kinase subunit beta MALT1 paracaspase MHC class II beta chain Mitogen-activated protein kinase kinase kinase 7 NF-kappa-B essential modulator NF-kappa-B essential modulator Phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN Phosphatidylinositol 3,4,5-trisphosphate 5-phosphatase 1 Phosphatidylinositol 3-kinase regulatory subunit alpha Phosphatidylinositol 3-kinase regulatory subunit beta Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit alpha isoform Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit beta isoform Protein kinase C theta type Proto-oncogene tyrosine-protein kinase LCK RT1 class II, H alpha RT1 class II, locus Hb, pseudogene 1 Rano class II histocompatibility antigen, B alpha chain Rano class II histocompatibility antigen, B-1 beta chain Rano class II histocompatibility antigen, D-1 beta chain Receptor-interacting serine/threonine-protein kinase 2 T cell receptor associated transmembrane adaptor 1 T cell receptor beta, variable 16 T-cell surface glycoprotein CD3 delta chain T-cell surface glycoprotein CD3 epsilon chain T-cell surface glycoprotein CD3 gamma chain T-cell surface glycoprotein CD3 zeta chain T-cell surface glycoprotein CD4 TGF-beta-activated kinase 1 and MAP3K7-binding protein 2 TNF receptor-associated factor 6	A0A023IKK2 A0A0G2K344 A0A8I5ZPF9 A0A8I6A4Z0 A0A8I6AA96 A0A8I6AAG4 A0A8I6AH74 A0A8I6ANR6 A0A8I6AU71 A0A8I6G8N5 A0A8I6GKC3 B5DF45 D3ZND8 D4A980 F7F6T0 G3V783 M0R576 M0RE10 O55173 P05540 P0C8E4 P18211 P19377 P20037 P29826 P97573 Q01621 Q5U303 Q63787 Q63788 Q64159 Q6MG98 Q6MGB1 Q6TMG5 Q9QY78 Q9QYN5 Q9WTQ0 Q9Z1L0	AABR07044416.1 Arrb2-ps Bcl10 Card11 Cd247 Cd3d Cd3e Cd3g Cd4 Chuk DA1 Db2 ENSRNOG00000065769 ENSRNOG00000065908 ENSRNOG00000065955 ENSRNOG00000070909 H2-Ea Hla-dma Hla-dmb Ikbkb Ikbkg Ikkb Inpp5d LOC100911800 Lck Malt1 Map3k7 Map3k7ip2 Nemo Pdk1 Pdpk1 Pik3ca Pik3cb Pik3r1 Pik3r2 Pkcq Prkcq Psmb9 Pten RT1-Ba RT1-Bb RT1-DOb RT1-Da RT1-Db1 RT1-Db2 RT1-Ha RT1-Hb-ps1 Ripk2 Ship Ship1 T3d Tab2 Tap1 Tap2 Tesb Traf6 Trat1 Trbv16	Rattus norvegicus (Norway rat)
Phosphorylation of CD3 and TCR zeta chains	Histocompatibility 2, class II antigen E alpha Ig-like domain-containing protein Ig-like domain-containing protein Ig-like domain-containing protein Ig-like domain-containing protein MHC class II beta chain Phosphoprotein associated with glycosphingolipid-enriched microdomains 1 Proto-oncogene tyrosine-protein kinase LCK RT1 class II, H alpha RT1 class II, locus Hb, pseudogene 1 Rano class II histocompatibility antigen, B alpha chain Rano class II histocompatibility antigen, B-1 beta chain Rano class II histocompatibility antigen, D-1 beta chain Receptor-type tyrosine-protein phosphatase C T cell receptor beta, variable 16 T-cell surface glycoprotein CD3 delta chain T-cell surface glycoprotein CD3 epsilon chain T-cell surface glycoprotein CD3 gamma chain T-cell surface glycoprotein CD3 zeta chain T-cell surface glycoprotein CD4 Tyrosine-protein kinase CSK protein-tyrosine-phosphatase protein-tyrosine-phosphatase	A0A023IKK2 A0A8I5ZPF9 A0A8I6A4Z0 A0A8I6AAG4 A0A8I6G8N5 A0A8I6GK94 A0A8I6GKC3 D3ZND8 D4A2D5 M0R576 M0RE10 P04157 P05540 P18211 P19377 P20037 P29826 P32577 Q01621 Q64159 Q6MG98 Q6MGB1 Q9JM80	AABR07044416.1 Arrb2-ps Cbp Cd247 Cd3d Cd3e Cd3g Cd4 Csk DA1 Db2 ENSRNOG00000065769 ENSRNOG00000065908 ENSRNOG00000065955 ENSRNOG00000070909 H2-Ea Hla-dma Hla-dmb LOC100911800 Lck Pag Pag1 Psmb9 Ptpn22 Ptprc Ptprj RT1-Ba RT1-Bb RT1-DOb RT1-Da RT1-Db1 RT1-Db2 RT1-Ha RT1-Hb-ps1 T3d Tap1 Tap2 Tesb Trbv16	Rattus norvegicus (Norway rat)
Generation of second messenger molecules	1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase gamma-1 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase gamma-2 CD101 molecule Cytoplasmic protein FYN-binding protein 1 GRB2-related adaptor protein 2 Histocompatibility 2, class II antigen E alpha Ig-like domain-containing protein Ig-like domain-containing protein Ig-like domain-containing protein Ig-like domain-containing protein Linker for activation of T-cells family member 1 Lymphocyte cytosolic protein 2 MHC class II beta chain Proto-oncogene tyrosine-protein kinase LCK RT1 class II, H alpha RT1 class II, locus Hb, pseudogene 1 Rano class II histocompatibility antigen, B alpha chain Rano class II histocompatibility antigen, B-1 beta chain Rano class II histocompatibility antigen, D-1 beta chain Serine/threonine-protein kinase PAK 1 Serine/threonine-protein kinase PAK 2 Serine/threonine-protein kinase PAK 3 T cell receptor beta, variable 16 T-cell surface glycoprotein CD3 delta chain T-cell surface glycoprotein CD3 epsilon chain T-cell surface glycoprotein CD3 gamma chain T-cell surface glycoprotein CD3 zeta chain T-cell surface glycoprotein CD4 Tyrosine-protein kinase Tyrosine-protein kinase	A0A023IKK2 A0A8I5ZPF9 A0A8I6A4Z0 A0A8I6AAG4 A0A8I6AHV6 A0A8I6G8N5 A0A8I6GKC3 A0A8J8YIH6 B2RZ33 D3ZIE4 D3ZND8 D4A7W7 F1M3S1 M0R576 M0RE10 O70601 P05540 P10686 P18211 P19377 P20037 P24135 P29826 P35465 Q01621 Q3KR57 Q62829 Q64159 Q64303 Q6MG98 Q6MGB1	AABR07044416.1 Arrb2-ps Cd101 Cd247 Cd3d Cd3e Cd3g Cd4 DA1 Db2 ENSRNOG00000065769 ENSRNOG00000065908 ENSRNOG00000065955 ENSRNOG00000070909 Fyb Fyb1 Grap2 H2-Ea Hla-dma Hla-dmb Itk LOC100911800 Lat Lck Lcp2 Nck1 Pak1 Pak2 Pak3 Plcg1 Plcg2 Psmb9 RT1-Ba RT1-Bb RT1-DOb RT1-Da RT1-Db1 RT1-Db2 RT1-Ha RT1-Hb-ps1 T3d Tap1 Tap2 Tesb Trbv16 Zap70	Rattus norvegicus (Norway rat)
PD-1 signaling	CD274 molecule Histocompatibility 2, class II antigen E alpha Ig-like domain-containing protein Ig-like domain-containing protein Ig-like domain-containing protein Ig-like domain-containing protein MHC class II beta chain Programmed cell death 1 ligand 2 Programmed cell death 1 Proto-oncogene tyrosine-protein kinase LCK RT1 class II, H alpha RT1 class II, locus Hb, pseudogene 1 Rano class II histocompatibility antigen, B alpha chain Rano class II histocompatibility antigen, B-1 beta chain Rano class II histocompatibility antigen, D-1 beta chain T cell receptor beta, variable 16 T-cell surface glycoprotein CD3 delta chain T-cell surface glycoprotein CD3 epsilon chain T-cell surface glycoprotein CD3 gamma chain T-cell surface glycoprotein CD3 zeta chain T-cell surface glycoprotein CD4 Tyrosine-protein kinase CSK Tyrosine-protein phosphatase non-receptor type 11 Tyrosine-protein phosphatase non-receptor type 6	A0A023IKK2 A0A8I5ZPF9 A0A8I6A4Z0 A0A8I6AAG4 A0A8I6G8N5 A0A8I6GKC3 D3ZIN8 D3ZND8 D4AAV6 D4AE25 M0R576 M0RE10 P05540 P18211 P19377 P20037 P29826 P32577 P41499 P81718 Q01621 Q64159 Q6MG98 Q6MGB1	AABR07044416.1 Arrb2-ps Cd247 Cd274 Cd3d Cd3e Cd3g Cd4 Csk DA1 Db2 ENSRNOG00000065769 ENSRNOG00000065908 ENSRNOG00000065955 ENSRNOG00000070909 H2-Ea Hla-dma Hla-dmb LOC100911800 Lck Pdcd1 Pdcd1lg2 Psmb9 Ptph6 Ptpn11 Ptpn6 RT1-Ba RT1-Bb RT1-DOb RT1-Da RT1-Db1 RT1-Db2 RT1-Ha RT1-Hb-ps1 T3d Tap1 Tap2 Tesb Trbv16	Rattus norvegicus (Norway rat)
Translocation of ZAP-70 to Immunological synapse	Histocompatibility 2, class II antigen E alpha Ig-like domain-containing protein Ig-like domain-containing protein Ig-like domain-containing protein Ig-like domain-containing protein MHC class II beta chain Proto-oncogene tyrosine-protein kinase LCK RT1 class II, H alpha RT1 class II, locus Hb, pseudogene 1 Rano class II histocompatibility antigen, B alpha chain Rano class II histocompatibility antigen, B-1 beta chain Rano class II histocompatibility antigen, D-1 beta chain T cell receptor beta, variable 16 T-cell surface glycoprotein CD3 delta chain T-cell surface glycoprotein CD3 epsilon chain T-cell surface glycoprotein CD3 gamma chain T-cell surface glycoprotein CD3 zeta chain T-cell surface glycoprotein CD4 Tyrosine-protein kinase protein-tyrosine-phosphatase	A0A023IKK2 A0A8I5ZPF9 A0A8I6A4Z0 A0A8I6AAG4 A0A8I6AHV6 A0A8I6G8N5 A0A8I6GKC3 D3ZND8 D4A2D5 M0R576 M0RE10 P05540 P18211 P19377 P20037 P29826 Q01621 Q64159 Q6MG98 Q6MGB1	AABR07044416.1 Arrb2-ps Cd247 Cd3d Cd3e Cd3g Cd4 DA1 Db2 ENSRNOG00000065769 ENSRNOG00000065908 ENSRNOG00000065955 ENSRNOG00000070909 H2-Ea Hla-dma Hla-dmb LOC100911800 Lck Psmb9 Ptpn22 RT1-Ba RT1-Bb RT1-DOb RT1-Da RT1-Db1 RT1-Db2 RT1-Ha RT1-Hb-ps1 T3d Tap1 Tap2 Tesb Trbv16 Zap70	Rattus norvegicus (Norway rat)
Vitamin B2 (riboflavin) metabolism	Ectonucleotide pyrophosphatase/phosphodiesterase family member 1 FAD synthase Solute carrier family 52, riboflavin transporter, member 2 Solute carrier family 52, riboflavin transporter, member 3 Tartrate-resistant acid phosphatase type 5 riboflavin kinase	A0A8I5ZLE0 A0A8I6AD19 B5MEV3 P29288 Q4FZU9 Q924C3	AABR07053065.1 Acp5 Enpp1 Flad1 Gpr172a Gpr172b Npps Pc1 Pdnp1 Rfk Rft1 Rft2 Slc52a2 Slc52a3	Rattus norvegicus (Norway rat)
Iron uptake and transport	Broad substrate specificity ATP-binding cassette transporter ABCG2 Ceruloplasmin Cullin 1 Cullin-associated NEDD8-dissociated protein 1 Cytoplasmic aconitate hydratase F-box/LRR-repeat protein 5 Ferritin heavy chain Ferritin light chain 1 Ferritin Ferritin Ferritin Heme oxygenase 1 Heme oxygenase 2 Hephaestin Iron-responsive element-binding protein 2 NEDD8 Natural resistance-associated macrophage protein 2 Neutrophil gelatinase-associated lipocalin Plasma membrane ascorbate-dependent reductase CYBRD1 Polyubiquitin-B Polyubiquitin-C Proton-coupled folate transporter S-phase kinase-associated protein 1 Serotransferrin Solute carrier family 22 member 17 Solute carrier family 40 member 1 Ubiquitin B-like Ubiquitin-ribosomal protein eS31 fusion protein	A0A0G2JTC9 A0A8I5Y0H0 A0A8I5ZU81 A0A8I6A5Y3 D3ZUG8 F1M5T1 O54902 P02793 P06762 P0CG51 P12346 P13635 P19132 P23711 P30152 P62982 P97536 Q5EBA8 Q5RKJ2 Q62751 Q63270 Q63429 Q6PEC4 Q71UE8 Q80W57 Q920H8 Q923U9 Q9P290	AABR07054189.1 Abcg2 Aco1 Bcrp1 Boct Boit Cand1 Cp Cul1 Cybrd1 Dct1 Dcytb Dmt1 Fbxl5 Fpn1 Fpt1 Fth Fth1 Fth1-ps5 Ftl Ftl1 Ftl1l2 Ftmt Hcp1 Heph Hmox1 Hmox2 Ireb1 Ireb2 Irebp Irp2 LOC100359668 LOC100360645 Lcn2 Nedd8 Nramp2 Pcft Rps27a Skp1 Skp1a Slc11a2 Slc22a17 Slc40a1 Slc46a1 Tf Tip120 Tip120a Uba80 Ubb Ubbl1 Ubc Ubcep1 Ubcl1	Rattus norvegicus (Norway rat)
Golgi Associated Vesicle Biogenesis	ADP-ribosylation factor 1 AP complex subunit beta AP complex subunit sigma AP complex subunit sigma AP-1 complex subunit beta-1 AP-1 complex subunit gamma AP-1 complex subunit mu-1 AP-1 complex subunit mu-2 AP-3 complex subunit beta AP-4 complex subunit epsilon Adaptin ear-binding coat-associated protein 1 Adaptor related protein complex 1 subunit sigma 1 Adaptor related protein complex 3 subunit sigma 1 Alpha-soluble NSF attachment protein Beta-arrestin-1 Biogenesis of lysosomal organelles complex 1 subunit 4 Biogenesis of lysosome-related organelles complex 1 subunit 1 Biogenesis of lysosome-related organelles complex 1 subunit 3 Biogenesis of lysosome-related organelles complex 1 subunit 6 Carboxypeptidase D Clathrin heavy chain 1 Clathrin interactor 1 Clathrin light chain A Cyclin-G-associated kinase DnaJ heat shock protein family (Hsp40) member C6 Dynamin-2 Dysbindin Endophilin-A1 Ferritin heavy chain Ferritin light chain 1 Ferritin Ferritin Golgi resident protein GCP60 Golgin B1 Heat shock cognate 71 kDa protein Huntingtin interacting protein 1 related Inositol polyphosphate 5-phosphatase OCRL Insulin-like growth factor 2 receptor Phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 alpha Phosphatidylinositol-binding clathrin assembly protein Protein YIPF6 Pumilio homolog 1 SH3 domain containing 19 SNARE-associated protein Snapin Sortilin Sorting nexin 9 Sorting nexin-2 Sorting nexin-5 TBC1 domain family member 8B TPD52 like 1 Trans-Golgi network integral membrane protein TGN38 Transferrin receptor protein 1 Tumor protein D52 Vesicle-associated membrane protein 2 Vesicle-associated membrane protein 7 Vesicle-associated membrane protein 8 protein disulfide-isomerase small monomeric GTPase	A0A0G2K865 A0A0G2K9M5 A0A8I5Y697 A0A8I5Y9G0 A0A8I5ZU81 A0A8I5ZVG9 A0A8I6A086 A0A8I6A678 A0A8I6A896 A0A8I6AAZ1 A0A8I6AMT9 A0A8I6GJY7 B0BNK1 B1H267 D3Z8L5 D3ZGS3 D3ZIF5 D3ZKU7 D3ZRP6 D3ZTF6 D3ZX21 D3ZZC1 D4A3V6 F1LML7 F1M5T1 F7EZ57 F7FE56 G3V6A8 G3V6R9 G3V824 G3V9Y9 O35179 O54861 O55012 P02793 P08081 P11442 P19132 P19814 P29066 P39052 P52303 P54921 P60192 P63018 P63045 P69682 P84079 P97874 Q32Q06 Q4QQU5 Q4V8A6 Q5M834 Q7TNY6 Q99376 Q9JHW1 Q9JHW5 Q9WUF4	AABR07054189.1 Acbd3 Adtb1 Ap1b1 Ap1g1 Ap1m1 Ap1m2 Ap1s1 Ap1s2 Ap1s3 Ap3b1 Ap3s1 Ap4b1 Ap4e1 Arf1 Arrb1 Bloc1s1 Bloc1s3 Bloc1s4 Bloc1s6 Bloc1s7 Bloc1s8 Calm Clint1 Clta Cltc Cpd Dnajc6 Dnm2 Dtnbp1 Dyn2 Fth Fth1 Fth1-ps5 Ftl Ftl1 Ftl1l2 Gak Gcp60 Golgb1 Hip1r Hsc70 Hsc73 Hspa8 Igf2r LOC100359668 Napa Necap1 Ocrl Picalm Pik3c2a Pldn Pum1 Rab5c Sh3d19 Sh3d2a Sh3gl2 Sh3p4 Snap Snap25bp Snapa Snapap Snapin Snx2 Snx5 Snx9 Sort1 Syb2 Sybl1 Tbc1d8b Tfrc Tpd52 Tpd52l1 Trfr Ttgn1 Txndc5 Vamp2 Vamp7 Vamp8 Yipf6	Rattus norvegicus (Norway rat)
Respiratory electron transport	Acyl carrier protein Coenzyme Q-binding protein COQ10 homolog B, mitochondrial Coenzyme Q10A Complex III subunit 9 Cytochrome b-c1 complex subunit 1, mitochondrial Cytochrome b-c1 complex subunit 2, mitochondrial Cytochrome b-c1 complex subunit 6, mitochondrial Cytochrome b-c1 complex subunit 7 Cytochrome b-c1 complex subunit 8 Cytochrome b-c1 complex subunit Rieske, mitochondrial Cytochrome b Cytochrome c domain-containing protein Cytochrome c oxidase assembly factor COX18 Cytochrome c oxidase assembly protein COX14 Cytochrome c oxidase assembly protein COX16 homolog, mitochondrial Cytochrome c oxidase assembly protein COX20, mitochondrial Cytochrome c oxidase copper chaperone COX11 Cytochrome c oxidase subunit 1 Cytochrome c oxidase subunit 2 Cytochrome c oxidase subunit 3 Cytochrome c oxidase subunit 4 isoform 1, mitochondrial Cytochrome c oxidase subunit 5A, mitochondrial Cytochrome c oxidase subunit 5B, mitochondrial Cytochrome c oxidase subunit 6A1, mitochondrial Cytochrome c oxidase subunit 6C-2 Cytochrome c oxidase subunit 7A2 like Cytochrome c oxidase subunit 7B, mitochondrial Cytochrome c oxidase subunit 7C, mitochondrial Cytochrome c oxidase subunit 8A, mitochondrial Cytochrome c oxidase subunit Cytochrome c, somatic Cytochrome c-1 Electron transfer flavoprotein subunit alpha, mitochondrial Electron transfer flavoprotein subunit beta Electron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial Leucine-rich PPR motif-containing protein, mitochondrial NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 10, mitochondrial NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 11 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 3 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 7 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 11, mitochondrial NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2, mitochondrial NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 3 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 4 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 5, mitochondrial NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 6 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8, mitochondrial NADH dehydrogenase [ubiquinone] 1 subunit C1, mitochondrial NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial NADH dehydrogenase [ubiquinone] flavoprotein 3, mitochondrial NADH dehydrogenase [ubiquinone] iron-sulfur protein 2, mitochondrial NADH dehydrogenase [ubiquinone] iron-sulfur protein 3, mitochondrial NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial NADH dehydrogenase [ubiquinone] iron-sulfur protein 5 NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial NADH dehydrogenase [ubiquinone] iron-sulfur protein 8, mitochondrial NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial NADH-ubiquinone oxidoreductase chain 1 NADH-ubiquinone oxidoreductase chain 2 NADH-ubiquinone oxidoreductase chain 3 NADH-ubiquinone oxidoreductase chain 4 NADH-ubiquinone oxidoreductase chain 5 NADH-ubiquinone oxidoreductase chain 6 Similar to Cytochrome c, somatic Surfeit locus protein 1 Synthesis of cytochrome C oxidase 1 Thymidine phosphorylase Translational activator of cytochrome c oxidase 1 Transmembrane protein 186	A0A0G2JYY6 A0A8I5Y9A4 A0A8I5ZKJ3 A0A8I5ZSY5 A0A8I5ZWG1 A0A8I5ZWM3 A0A8I6A5D4 A0A8I6A8X0 A0A8I6AAY1 A0A8I6AKU6 A0A8I6AL00 A0A8I6B100 B2RYS2 B2RYT9 B2RYX1 D3Z8B0 D3ZE15 D3ZF13 D3ZFQ8 D3ZG43 D3ZLT1 D3ZNJ0 D3ZQH7 D3ZXV2 D3ZZ21 D4A0T0 D4A3V2 D4A565 D4A568 D4A5L9 D4A7L4 F1LXA0 F1LZC5 F7ELE5 F7EXQ7 F7F9K9 G3V985 M0RB63 P00159 P00406 P03889 P03926 P05503 P05505 P05506 P05508 P10818 P10888 P11240 P11661 P11662 P11951 P12075 P13803 P19234 P20788 P32551 P52504 P62898 P80431 P80432 P80433 Q4KLZ1 Q561S0 Q5BK63 Q5I0I9 Q5M9I5 Q5SGE0 Q5XFV8 Q5XIF3 Q5XIH3 Q63362 Q641Y2 Q66HF1 Q68FU3 Q68FY0 Q6PCU8 Q6UPE1 Q7TQ16 Q80W89 Q9QXU2	AABR07056686.1 AC128290.1 COX2 Ccdc44 Cob Coi Coii Coiii Coq10a Coq10b Cox11 Cox14 Cox16 Cox18 Cox4 Cox4a Cox4i1 Cox5a Cox5b Cox6a1 Cox6al Cox6b1 Cox6c Cox6c2 Cox7a2l Cox7b Cox7c Cox7c1 Cox8 Cox8a Cox8l Cyc1 Cycs Cycsl2 Cycsl3 Cytb Etfa Etfb Etfdh Ip13 LOC100363268 LOC100911483 LOC103691107 LOC120096563 LOC120101567 LOC684509 LOC690675 Lrp157 Lrpprc Mt-co1 Mt-co2 Mt-co3 Mt-cyb Mt-nd1 Mt-nd2 Mt-nd3 Mt-nd4 Mt-nd5 Mt-nd6 Mtco1 Mtco2 Mtco3 Mtcyb Mtnd1 Mtnd4 Mtnd5 Mtnd6 Nd1 Nd2 Nd3 Nd4 Nd5 Nd6 Ndufa10 Ndufa11 Ndufa12 Ndufa13 Ndufa2 Ndufa3-ps3 Ndufa5 Ndufa6 Ndufa8 Ndufa9 Ndufab1 Ndufb10 Ndufb11 Ndufb2 Ndufb3 Ndufb4l5 Ndufb5 Ndufb6 Ndufb7 Ndufb8 Ndufc1 Ndufs1 Ndufs2 Ndufs3 Ndufs4 Ndufs5 Ndufs5-ps2 Ndufs6 Ndufs7 Ndufs8 Ndufv1 Ndufv2 Ndufv3 Qpc RGD1562558 Sco1 Surf-1 Surf1 Taco1 Tmem186 Tymp Uqcr10 Uqcrb Uqcrc1 Uqcrc2 Uqcrfs1 Uqcrh Uqcrq	Rattus norvegicus (Norway rat)
Complex I biogenesis	Acyl carrier protein Arginine-hydroxylase NDUFAF5, mitochondrial Complex I assembly factor ACAD9, mitochondrial Complex I assembly factor TIMMDC1, mitochondrial Complex I assembly factor TMEM126B, mitochondrial Complex I intermediate-associated protein 30, mitochondrial Evolutionarily conserved signaling intermediate in Toll pathway, mitochondrial NADH dehydrogenase (ubiquinone) complex I, assembly factor 6 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 4 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 10, mitochondrial NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 11 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 3 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 7 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 11, mitochondrial NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2, mitochondrial NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 3 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 4 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 5, mitochondrial NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 6 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8, mitochondrial NADH dehydrogenase [ubiquinone] 1 subunit C1, mitochondrial NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial NADH dehydrogenase [ubiquinone] flavoprotein 3, mitochondrial NADH dehydrogenase [ubiquinone] iron-sulfur protein 2, mitochondrial NADH dehydrogenase [ubiquinone] iron-sulfur protein 3, mitochondrial NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial NADH dehydrogenase [ubiquinone] iron-sulfur protein 5 NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial NADH dehydrogenase [ubiquinone] iron-sulfur protein 8, mitochondrial NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial NADH-ubiquinone oxidoreductase chain 1 NADH-ubiquinone oxidoreductase chain 2 NADH-ubiquinone oxidoreductase chain 3 NADH-ubiquinone oxidoreductase chain 4 NADH-ubiquinone oxidoreductase chain 5 NADH-ubiquinone oxidoreductase chain 6 NADH NUBP iron-sulfur cluster assembly factor like Protein arginine methyltransferase NDUFAF7, mitochondrial Transmembrane protein 186	A0A0G2JZF6 A0A8I5Y9A4 A0A8I5ZKJ3 A0A8I5ZWM3 A0A8I6A5D4 A0A8I6AKU6 A0A8I6AL00 A0A8I6B100 B1WC61 B2GV71 B2RZD2 D3ZE15 D3ZF13 D3ZFQ3 D3ZG43 D3ZLT1 D3ZN43 D3ZQH7 D3ZZ21 D4A0T0 D4A3V2 D4A565 D4A7L4 F1LWG4 F1LXA0 F1LZC5 F7ELE5 F7EXQ7 F7F9K9 M0RB63 O08776 P03889 P03926 P05506 P05508 P11661 P11662 P19234 P52504 Q4KLZ1 Q561S0 Q5BK63 Q5XI79 Q5XIC2 Q5XIF3 Q5XIH3 Q63362 Q641Y2 Q66HF1 Q6AY94 Q6PCU8 Q80W89 Q9NQR8	AABR07056686.1 Acad9 Ecsit Hrpap20 Ip13 LOC100363268 LOC100911483 LOC103691107 LOC120101567 LOC684509 Mt-nd1 Mt-nd2 Mt-nd3 Mt-nd4 Mt-nd5 Mt-nd6 Mtnd1 Mtnd4 Mtnd5 Mtnd6 Nd1 Nd2 Nd3 Nd4 Nd5 Nd6 Ndufa10 Ndufa11 Ndufa12 Ndufa13 Ndufa2 Ndufa3-ps3 Ndufa5 Ndufa6 Ndufa8 Ndufa9 Ndufab1 Ndufaf1 Ndufaf2 Ndufaf3 Ndufaf4 Ndufaf5 Ndufaf6 Ndufaf7 Ndufb10 Ndufb11 Ndufb2 Ndufb3 Ndufb4l5 Ndufb5 Ndufb6 Ndufb7 Ndufb8 Ndufc1 Ndufs1 Ndufs2 Ndufs3 Ndufs4 Ndufs5 Ndufs5-ps2 Ndufs6 Ndufs7 Ndufs8 Ndufv1 Ndufv2 Ndufv3 Nubpl Timmdc1 Tmem126b Tmem186	Rattus norvegicus (Norway rat)
RNA polymerase II transcribes snRNA genes	Arsenite-resistance protein 2 Ccnk protein Cyclin T2 Cyclin-T1 Cyclin-dependent kinase 7 (Fragment) Cyclin-dependent kinase 9 DNA-directed RNA polymerase II subunit RPB7 DNA-directed RNA polymerase subunit beta DNA-directed RNA polymerase subunit DNA-directed RNA polymerases I, II, and III subunit RPABC1 DNA-directed RNA polymerases I, II, and III subunit RPABC2 DNA-directed RNA polymerases I, II, and III subunit RPABC3 DNA-directed RNA polymerases I, II, and III subunit RPABC5 Elongation factor for RNA polymerase II 2 Elongation factor for RNA polymerase II General transcription factor IIE subunit 1 General transcription factor IIF subunit 1 General transcription factor IIF subunit 2 Integrator complex subunit 10 Integrator complex subunit 11 Integrator complex subunit 12 Integrator complex subunit 13 Integrator complex subunit 14 Integrator complex subunit 1 Integrator complex subunit 2 Integrator complex subunit 3 Integrator complex subunit 4 Integrator complex subunit 5 Integrator complex subunit 6 Integrator complex subunit 7 Integrator complex subunit 8 Integrator complex subunit 9 Interactor of little elongation complex ELL subunit 1 Interactor of little elongation complex ELL subunit 2 Nuclear cap-binding protein subunit 1 Nuclear cap-binding protein subunit 2 PCF11 cleavage and polyadenylation factor subunit POU domain protein POU domain, class 2, transcription factor 1 (Fragment) Phosphorylated adapter RNA export protein RNA polymerase II elongation factor ELL3 RNA polymerase II subunit A C-terminal domain phosphatase SSU72 RNA polymerase II subunit B1 CTD phosphatase Rpap2 RNA polymerase II subunit C RNA polymerase II subunit D RNA polymerase II subunit I RNA polymerase II subunit J Regulation of nuclear pre-mRNA domain containing 2 Regulation of nuclear pre-mRNA domain-containing protein Regulation of nuclear pre-mRNA domain-containing protein SOSS complex subunit B1 SOSS complex subunit B2 Small nuclear RNA activating complex, polypeptide 1 Small nuclear RNA activating complex, polypeptide 4 TATA-box binding protein associated factor 13 TATA-box binding protein associated factor 5 TATA-box-binding protein Transcription elongation factor SPT4 Transcription elongation factor SPT5 Transcription factor Sp1 Transcription initiation factor IIA subunit 1 Transcription initiation factor IIA subunit 2 Transcription initiation factor IIB Transcription initiation factor IIE subunit beta Transcription initiation factor TFIID subunit 11 Transcription initiation factor TFIID subunit 6 Transcription initiation factor TFIID subunit 8 Transcription initiation factor TFIID subunit 9 Zinc finger CCCH type containing 8 snRNA-activating protein complex subunit 2 snRNA-activating protein complex subunit 3	A0A096MJ28 A0A0G2JXM2 A0A0G2K0V1 A0A0G2K8E5 A0A8I5ZQE1 A0A8I5ZR84 A0A8I5ZWB2 A0A8I5ZXX1 A0A8I6A150 A0A8I6A2X2 A0A8I6A4F7 A0A8I6A5G5 A0A8I6A799 A0A8I6A9T0 A0A8I6AHR3 A0A8I6AM26 A0A8I6AP01 A0A8I6AXL7 A0A8I6G5J7 A0A8I6GJT1 A1L1L5 B0BNE2 B1WC40 B2RYQ7 B5DEK0 B5DEM7 D3ZCP9 D3ZGL6 D3ZH66 D3ZIQ8 D3ZQI0 D3ZTW1 D3ZUT9 D4A5A6 D4AAU4 D4ADS6 F1LYZ6 F1M8D7 F7ES94 F7FCG9 G3V8Y5 G3V992 M0RBH0 M0RCG9 O08949 O08950 O88828 P31503 P51952 P62489 P62916 Q01714 Q01750 Q3MHC2 Q3SWT1 Q4KLK9 Q56A27 Q5BK68 Q5BKE0 Q5EB90 Q5FVP2 Q5I0E6 Q5U1X0 Q5XFX8 Q63068 Q63801 Q641Z4 Q66H58 Q68FR3 Q68FX5 Q6AY96	AABR07064983.1 AC109542.1 Cak Cak1 Cbp20 Cbp80 Ccnk Ccnt1 Ccnt2 Cdk7 Cdk9 Cpsf3l Ell Ell2 Ell3 Gtf2a1 Gtf2a2 Gtf2b Gtf2e1 Gtf2e2 Gtf2f1 Gtf2f2 Ice1 Ice2 Ints1 Ints10 Ints11 Ints12 Ints13 Ints14 Ints2 Ints3 Ints4 Ints5 Ints6 Ints7 Ints8 Ints9 LOC120098305 Mo15 Nabp1 Nabp2 Narg2 Ncbp1 Ncbp2 Obfc2a Obfc2b Oct-1 Otf-1 Otf1 Pcf11 Phax Phf22 Polr2a Polr2b Polr2c Polr2d Polr2e Polr2f Polr2g Polr2i Polr2j Pou2f1 Pou2f2 RGD1562299 Rap30 Rnuxa Rpap2 Rprd1a Rprd1b Rprd2 Snapc1 Snapc2 Snapc3 Snapc4 Sp1 Srrt Ssb1 Ssb2 Ssu72 Supt4h1 Supt5h Taf11 Taf13 Taf2e Taf2g Taf5 Taf6 Taf8l1 Taf9 Tafii31 Tbp Vwa9 Zc3h8	Rattus norvegicus (Norway rat)
Recruitment and ATM-mediated phosphorylation of repair and signaling proteins at DNA double strand breaks	Amyloid beta precursor protein binding family B member 1 BRCA1-A complex subunit Abraxas 1 BRCA1-A complex subunit RAP80 BRCA1-associated RING domain protein 1 BRISC and BRCA1-A complex member 1 BRISC and BRCA1-A complex member 2 Breast cancer type 1 susceptibility protein homolog Bromodomain adjacent to zinc finger domain, 1B Cellular tumor antigen p53 DNA repair protein RAD50 Double-strand break repair protein MRE11 E3 ubiquitin-protein ligase RNF168 E3 ubiquitin-protein ligase RNF8 Eyes absent homolog Eyes absent homolog Eyes absent homolog Eyes absent homolog HECT-type E3 ubiquitin transferase Histone H2A Histone H2B type 1-A Histone H2B Histone H2B Histone H2B Histone H2B Histone H2B Histone H2B Histone H2B Histone H4 Histone acetyltransferase KAT5 Lys-63-specific deubiquitinase BRCC36 Mediator of DNA damage checkpoint protein 1 Mitogen-activated protein kinase 8 Nibrin Nuclear receptor binding SET domain protein 2 Polyubiquitin-B Polyubiquitin-C Protein inhibitor of activated STAT, 4 SUMO-conjugating enzyme UBC9 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 Serine-protein kinase ATM Serine/threonine-protein phosphatase 5 Small ubiquitin-related modifier 1 Tumor protein p53 binding protein 1 Tyrosine-protein kinase UBX domain-containing protein 1 Ubiquitin B-like Ubiquitin carboxyl-terminal hydrolase BAP1 Ubiquitin-conjugating enzyme E2 variant 2 Ubiquitin-ribosomal protein eS31 fusion protein [histone H3]-trimethyl-L-lysine(9) demethylase [histone H3]-trimethyl-L-lysine(9) demethylase	A0A0G2JUC9 A0A0G2JXI9 A0A0G2JZ01 A0A0G2K5I7 A0A8I5ZQQ5 A0A8I5ZSA8 A0A8I6A2W1 A0A8I6A5Y3 A0A8I6A7P3 A0A8I6AFW8 A0A8I6ALC2 B2RYM5 B2RYR0 B5DFF9 D3ZHS6 D3ZVI5 D3ZXP3 D4A9J4 D4ACL8 E9PT20 E9PTJ3 F1LX86 F1M842 G3V9C7 M0RB75 M0RBQ5 O54952 P0CG51 P10361 P46933 P49185 P53042 P62804 P62982 P63281 Q00729 Q499N6 Q4KLN8 Q5I0F1 Q5I0H3 Q5PQK4 Q5U2M8 Q5XIJ6 Q63429 Q6P7Q1 Q7M767 Q99MK2 Q9JIL8 Q9JIL9 Q9JIM0 Q9QZH2	ABRAXAS1 Abl1 Abra1 Apbb1 Atm Babam1 Babam2 Bap1 Bard1 Baz1b Brca1 Brcc3 Brcc36 Bre Ccdc98 ENSRNOG00000064540 ENSRNOG00000066901 ENSRNOG00000068034 Eya1 Eya2 Eya3 Eya4 Fam175a Fe65 H2afx H2ax H2bc1 H2bc12l1 H2bc6 H2bcl1 H2bcl2 H2bu1 H4c16 H4c2 H4f16 H4ft Herc2 Hist1h2ba Hist1h2bc Hist1h2bg Hist1h2bo Hist1h2bq Hist1h4b Hist1h4m Hist4 Hist4h4 Htatip Jnk1 Kat5 Kdm4a Kdm4b LOC100360645 LOC100365043 LOC100910200 LOC684797 Mapk8 Mdc1 Merit40 Mms2 Mre11 Mre11a Nba1 Nbn Nbs1 Nsd2 P53 Pias4 Ppp5c Prkm8 Rad50 Rap80 Rir Rnf168 Rnf8 Rps27a Saks1 Smarca5 Sumo1 Th2b Tip60 Tip60b Tp53 Tp53bp1 Uba80 Ubb Ubbl1 Ubc Ubce9 Ubcep1 Ubcl1 Ube2i Ube2v2 Ubxn1 Uev2 Uimc1 Whsc1	Rattus norvegicus (Norway rat)
Metalloprotease DUBs	Abraxas 2, BRISC complex subunit BRCA1-A complex subunit Abraxas 1 BRCA1-A complex subunit RAP80 BRCA1-associated RING domain protein 1 BRISC and BRCA1-A complex member 1 BRISC and BRCA1-A complex member 2 Breast cancer type 1 susceptibility protein homolog Histone H2A type 2-A Histone H2A type 3 Histone H2A.J Histone H2A Histone H2A Histone H2A Histone acetyltransferase Lys-63-specific deubiquitinase BRCC36 Myb-like, SWIRM and MPN domain-containing protein 1 NACHT, LRR and PYD domains-containing protein 3 Polyubiquitin-B Polyubiquitin-C Proteasome (Prosome, macropain) 26S subunit, non-ATPase, 14 STAM binding protein-like 1 STAM-binding protein Signal transducing adaptor molecule Ubiquitin B-like Ubiquitin-ribosomal protein eS31 fusion protein histone acetyltransferase	A0A8I5Y222 A0A8I5ZYY0 A0A8I6A5Y3 A0A8I6AWT3 A0A8I6G641 A9UMV8 B2RYM5 B5DF55 D3ZVK7 D4A415 D4A523 D4A7T9 M0RA63 O54952 P0CC09 P0CG51 P62982 Q4FZT6 Q4V8E2 Q5I0F1 Q5PQK4 Q5XIJ6 Q63429 Q6P7Q1 Q8R424 Q9QZH2	ABRAXAS1 Abra1 Abraxas2 Amsh Babam1 Babam2 Bard1 Brca1 Brcc3 Brcc36 Bre Ccdc98 ENSRNOG00000062927 Ep300 Fam175a Fam175b H2ac10 H2ac18 H2ac25 H2ac4 H2aj Hist2h2aa3 Hist3h2a Kat2b LOC100360645 LOC120097726 Merit40 Mysm1 Nba1 Nlrp3 Psmd14 Rap80 Rps27a Stam Stambp Stambpl1 Uba80 Ubb Ubbl1 Ubc Ubcep1 Ubcl1 Uimc1	Rattus norvegicus (Norway rat)
Processing of DNA double-strand break ends	ATR interacting protein BRCA1 interacting helicase 1 BRCA1-A complex subunit Abraxas 1 BRCA1-A complex subunit RAP80 BRCA1-associated RING domain protein 1 BRISC and BRCA1-A complex member 1 BRISC and BRCA1-A complex member 2 Breast cancer type 1 susceptibility protein homolog Cell cycle checkpoint control protein RAD9B Cell cycle checkpoint control protein Checkpoint protein Claspin Cyclin-A1 Cyclin-A2 Cyclin-dependent kinase 2 DNA 3'-5' helicase DNA 3'-5' helicase DNA endonuclease RBBP8 DNA repair protein RAD50 DNA replication ATP-dependent helicase/nuclease DNA2 DNA topoisomerase II binding protein 1 DNA topoisomerase Double-strand break repair protein MRE11 E3 ubiquitin-protein ligase RNF168 E3 ubiquitin-protein ligase RNF8 Exonuclease 1 HECT-type E3 ubiquitin transferase Histone H2A Histone H2B type 1-A Histone H2B Histone H2B Histone H2B Histone H2B Histone H2B Histone H2B Histone H2B Histone H4 Histone acetyltransferase KAT5 Lys-63-specific deubiquitinase BRCC36 Mediator of DNA damage checkpoint protein 1 Nibrin Nuclear receptor binding SET domain protein 2 Protein inhibitor of activated STAT, 4 Protein phosphatase 4, regulatory subunit 2 Protein timeless homolog RAD1 checkpoint DNA exonuclease RAD17 checkpoint clamp loader component RAD9, HUS1, RAD1-interacting nuclear orphan protein 1 RecQ mediated genome instability 2 RecQ-mediated genome instability protein 1 Replication factor C subunit 2 Replication factor C subunit 3 Replication factor C subunit 4 Replication factor C subunit 5 Replication protein A 32 kDa subunit Replication protein A subunit Replication protein A3 SUMO-conjugating enzyme UBC9 Serine-protein kinase ATM Serine/threonine-protein kinase ATR Serine/threonine-protein kinase Chk1 Serine/threonine-protein phosphatase 4 catalytic subunit Small ubiquitin-related modifier 2 TIMELESS-interacting protein TIMELESS-interacting protein Tumor protein p53 binding protein 1 Ubiquitin-conjugating enzyme E2 variant 2	A0A0G2JUC9 A0A0G2JVY9 A0A0G2JXI9 A0A0G2K475 A0A0G2K4W8 A0A8I5ZSA8 A0A8I6A014 A0A8I6A2W1 A0A8I6A7P3 A0A8I6AFW8 A0A8I6GFZ6 B1WC58 B2RYM5 B2RYR0 B4F778 B5DF29 B5DFF9 D3Z822 D3ZC52 D3ZG52 D3ZHC3 D3ZHX4 D3ZNA8 D3ZQW1 D3ZXM2 D3ZXP3 D4A4M3 D4A6J4 D4A845 D4A8H5 D4A9J4 D4ACL8 E9PTL1 F1LM96 F1LTH9 F1M842 G3V9C7 M0RBQ5 O54952 P61959 P62804 P63281 Q00729 Q499V3 Q4KLN8 Q4QR88 Q5BJ92 Q5I0F1 Q5M830 Q5PQK4 Q5U2M8 Q5XIJ6 Q63528 Q63699 Q641W4 Q6AY13 Q6AY26 Q6P7Q1 Q7M767 Q7TP21 Q91ZN7 Q99MK2 Q9JIL8 Q9JIL9 Q9JIM0 Q9QZH2 Q9Z2Y1	ABRAXAS1 Abra1 Atm Atr Atrip Babam1 Babam2 Bard1 Blm Brca1 Brcc3 Brcc36 Bre Brip1 Ccdc98 Ccna1 Ccna2 Cdk2 Cdkn2 Chek1 Chk1 Clspn Ctip Dna2 ENSRNOG00000064540 ENSRNOG00000066901 ENSRNOG00000068034 Exo1 Fam175a H2afx H2ax H2bc1 H2bc12l1 H2bc6 H2bcl1 H2bcl2 H2bu1 H4c16 H4c2 H4f16 H4ft Herc2 Hist1h2ba Hist1h2bc Hist1h2bg Hist1h2bo Hist1h2bq Hist1h4b Hist1h4m Hist4 Hist4h4 Htatip Hus1 Kat5 LOC100365043 LOC100910200 LOC120094818 LOC684797 Mdc1 Merit40 Mms2 Mre11 Mre11a Nba1 Nbn Nbs1 Nsd2 Pias4 Ppp4c Ppp4r2 RGD1564788 Rad1 Rad17 Rad50 Rad9a Rad9b Rap80 Rbbp8 Rfc2 Rfc3 Rfc4 Rfc5 Rhno1 Rmi1 Rmi2 Rnf168 Rnf8 Rpa1 Rpa2 Rpa3 Smt3a Smt3h2 Sumo2 Th2b Timeless Tip60 Tip60b Tipin Tipinl1 Top3a Topbp1 Tp53bp1 Ubce9 Ube2i Ube2v2 Uev2 Uimc1 Whsc1 Wrn	Rattus norvegicus (Norway rat)
G2/M DNA damage checkpoint	ATR interacting protein BRCA1 interacting helicase 1 BRCA1-A complex subunit Abraxas 1 BRCA1-A complex subunit RAP80 BRCA1-associated RING domain protein 1 BRISC and BRCA1-A complex member 1 BRISC and BRCA1-A complex member 2 Breast cancer type 1 susceptibility protein homolog Cell cycle checkpoint control protein RAD9B Cell cycle checkpoint control protein Cellular tumor antigen p53 Checkpoint protein DNA 3'-5' helicase DNA 3'-5' helicase DNA endonuclease RBBP8 DNA repair protein RAD50 DNA replication ATP-dependent helicase/nuclease DNA2 DNA topoisomerase II binding protein 1 DNA topoisomerase Double-strand break repair protein MRE11 E3 ubiquitin-protein ligase RNF168 E3 ubiquitin-protein ligase RNF8 Exonuclease 1 HECT-type E3 ubiquitin transferase Histone H2A Histone H2B type 1-A Histone H2B Histone H2B Histone H2B Histone H2B Histone H2B Histone H2B Histone H2B Histone H4 Histone acetyltransferase KAT5 Lys-63-specific deubiquitinase BRCC36 Mediator of DNA damage checkpoint protein 1 Nibrin Nuclear receptor binding SET domain protein 2 Protein inhibitor of activated STAT, 4 RAD1 checkpoint DNA exonuclease RAD17 checkpoint clamp loader component RAD9, HUS1, RAD1-interacting nuclear orphan protein 1 RecQ mediated genome instability 2 RecQ-mediated genome instability protein 1 Replication factor C subunit 2 Replication factor C subunit 3 Replication factor C subunit 4 Replication factor C subunit 5 Replication protein A 32 kDa subunit Replication protein A subunit Replication protein A3 Serine-protein kinase ATM Serine/threonine-protein kinase ATR Serine/threonine-protein kinase Chk1 Tumor protein p53 binding protein 1 Ubiquitin-conjugating enzyme E2 variant 2	A0A0G2JUC9 A0A0G2JXI9 A0A0G2K475 A0A0G2K4W8 A0A8I5ZSA8 A0A8I6A014 A0A8I6A2W1 A0A8I6A7P3 A0A8I6AFW8 A0A8I6GFZ6 B1WC58 B2RYM5 B2RYR0 B4F778 B5DF29 B5DFF9 D3Z822 D3ZC52 D3ZG52 D3ZHX4 D3ZNA8 D3ZQW1 D3ZXM2 D3ZXP3 D4A4M3 D4A6J4 D4A845 D4A9J4 D4ACL8 E9PTL1 F1LTH9 F1M842 G3V9C7 M0RBQ5 O54952 P10361 P62804 Q00729 Q499V3 Q4KLN8 Q5I0F1 Q5M830 Q5PQK4 Q5U2M8 Q5XIJ6 Q63528 Q641W4 Q6AY26 Q6P7Q1 Q7M767 Q7TP21 Q91ZN7 Q99MK2 Q9JIL8 Q9JIL9 Q9JIM0 Q9QZH2	ABRAXAS1 Abra1 Atm Atr Atrip Babam1 Babam2 Bard1 Blm Brca1 Brcc3 Brcc36 Bre Brip1 Ccdc98 Chek1 Chk1 Ctip Dna2 ENSRNOG00000064540 ENSRNOG00000066901 ENSRNOG00000068034 Exo1 Fam175a H2afx H2ax H2bc1 H2bc12l1 H2bc6 H2bcl1 H2bcl2 H2bu1 H4c16 H4c2 H4f16 H4ft Herc2 Hist1h2ba Hist1h2bc Hist1h2bg Hist1h2bo Hist1h2bq Hist1h4b Hist1h4m Hist4 Hist4h4 Htatip Hus1 Kat5 LOC100365043 LOC100910200 LOC684797 Mdc1 Merit40 Mms2 Mre11 Mre11a Nba1 Nbn Nbs1 Nsd2 P53 Pias4 RGD1564788 Rad1 Rad17 Rad50 Rad9a Rad9b Rap80 Rbbp8 Rfc2 Rfc3 Rfc4 Rfc5 Rhno1 Rmi1 Rmi2 Rnf168 Rnf8 Rpa1 Rpa2 Rpa3 Th2b Tip60 Tip60b Top3a Topbp1 Tp53 Tp53bp1 Ube2v2 Uev2 Uimc1 Whsc1 Wrn	Rattus norvegicus (Norway rat)
Nonhomologous End-Joining (NHEJ)	BRCA1-A complex subunit Abraxas 1 BRCA1-A complex subunit RAP80 BRCA1-associated RING domain protein 1 BRISC and BRCA1-A complex member 1 BRISC and BRCA1-A complex member 2 Breast cancer type 1 susceptibility protein homolog DNA ligase DNA polymerase lambda DNA repair protein RAD50 DNA-dependent protein kinase catalytic subunit DNA-directed DNA/RNA polymerase mu Double-strand break repair protein MRE11 E3 ubiquitin-protein ligase RNF168 E3 ubiquitin-protein ligase RNF8 HECT-type E3 ubiquitin transferase Histone H2A Histone H2B type 1-A Histone H2B Histone H2B Histone H2B Histone H2B Histone H2B Histone H2B Histone H2B Histone H4 Histone acetyltransferase KAT5 Lys-63-specific deubiquitinase BRCC36 Mediator of DNA damage checkpoint protein 1 Nibrin Non-homologous end-joining factor 1 Nuclear receptor binding SET domain protein 2 PAX-interacting protein 1 Protein artemis Protein inhibitor of activated STAT, 4 Replication timing regulatory factor 1 Serine-protein kinase ATM Tumor protein p53 binding protein 1 Tyrosyl-DNA phosphodiesterase 1 Tyrosyl-DNA phosphodiesterase 2 Ubiquitin-conjugating enzyme E2 variant 2 X-ray repair cross complementing 4 X-ray repair cross complementing 6 X-ray repair cross-complementing protein 5	A0A0G2JUC9 A0A0G2JXI9 A0A8I5Y5Z6 A0A8I5ZSA8 A0A8I5ZSS0 A0A8I6A2W1 A0A8I6A7P3 A0A8I6AFW8 A0A8I6AHX2 B2RYM5 B2RYR0 B5DFF9 D3ZSX6 D3ZTN0 D3ZXP3 D4A0U6 D4A9J4 D4ACL8 F1M842 F7F6Z7 G3V817 G3V9C7 M0RBQ5 O54952 P62804 Q00729 Q3T1H5 Q4G056 Q4KLN8 Q5I0F1 Q5PQK4 Q5RKI3 Q5U2M8 Q5XIJ6 Q5XIX3 Q6AYI4 Q6P7Q1 Q7M767 Q99MK2 Q9JIL8 Q9JIL9 Q9JIM0 Q9QZH2	ABRAXAS1 Abra1 Atm Babam1 Babam2 Bard1 Brca1 Brcc3 Brcc36 Bre Ccdc98 Dclre1c ENSRNOG00000064540 ENSRNOG00000066901 ENSRNOG00000068034 Fam175a H2afx H2ax H2bc1 H2bc12l1 H2bc6 H2bcl1 H2bcl2 H2bu1 H4c16 H4c2 H4f16 H4ft Herc2 Hist1h2ba Hist1h2bc Hist1h2bg Hist1h2bo Hist1h2bq Hist1h4b Hist1h4m Hist4 Hist4h4 Htatip Kat5 LOC100365043 LOC100910200 LOC684797 Lig4 Mdc1 Merit40 Mms2 Mre11 Mre11a Nba1 Nbn Nbs1 Nhej1 Nsd2 Paxip1 Pias4 Poll Polm Prkdc Rad50 Rap80 Rif1 Rnf168 Rnf8 Snm1l Tdp1 Tdp2 Th2b Tip60 Tip60b Tp53bp1 Ttrap Ube2v2 Uev2 Uimc1 Whsc1 Xlf Xrcc4 Xrcc5 Xrcc6	Rattus norvegicus (Norway rat)
Mitochondrial Fatty Acid Beta-Oxidation	3-ketoacyl-CoA thiolase, mitochondrial Acetyl-coenzyme A thioesterase Acyl carrier protein Acyl-CoA dehydrogenase family member 11 Acyl-CoA thioesterase 11 Acyl-CoA thioesterase 13 Acyl-CoA thioesterase 3 Acyl-CoA thioesterase 5 Acyl-CoA thioesterase 9 Acyl-CoA-binding domain-containing protein 6 Acyl-CoA-binding protein Acyl-coenzyme A thioesterase 1 Acyl-coenzyme A thioesterase 2, mitochondrial Acyl-coenzyme A thioesterase THEM4 Cytosolic acyl coenzyme A thioester hydrolase Malonyl-CoA-acyl carrier protein transacylase Medium-chain acyl-CoA ligase ACSF2, mitochondrial Phosphatidylcholine transfer protein Thioesterase superfamily member 5	A0A8I6A6H9 A0A8I6AEW3 A0A8I6G299 A1A5R4 B3DMA2 D3ZA93 D3ZF13 D3ZPF2 F7ETS0 O55171 O88267 P11030 P13437 P53809 Q499N5 Q566R0 Q5RJK8 Q64559 Q99NB7	AC094055.1 Acaa2 Acad11 Acbd6 Acot1 Acot11 Acot12 Acot13 Acot2 Acot3 Acot5 Acot7 Acot9 Acsf2 Bach Cach Cach1 Cte1 Dbi Mcat Mte1 Ndufab1 Pctp Stard2 Them4 Them5	Rattus norvegicus (Norway rat)
Termination of O-glycan biosynthesis	Alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3 Beta-galactoside alpha-2,6-sialyltransferase 1 CMP-N-acetylneuraminate-beta-1,4-galactoside alpha-2,3-sialyltransferase CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 1 CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 2 CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 4 Mucin 15, cell surface associated Mucin 19, oligomeric Mucin 20, cell surface associated Mucin 5AC, oligomeric mucus/gel-forming Mucin 5B, oligomeric mucus/gel-forming Mucin 6, oligomeric mucus/gel-forming Mucin-13 Mucin-1 Mucin-2 (Fragment) Mucin-4 ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 4 alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase	A0A0G2JXL5 A0A0G2K8X5 A0A1W2Q5Z7 A0A8I6AAU0 A0A8I6AHG2 A0A8I6GM17 D3ZAU0 D4A6I9 F7EK02 P13721 P61131 P97881 Q02734 Q11205 Q62635 Q63661 Q64686 Q6ZYN8	AC096792.1 Muc1 Muc13 Muc15 Muc19 Muc2 Muc20 Muc4 Muc5ac Muc5b Muc6 Siat1 Siat4b Siat4c Siat5 Siat6 Siat7c Smc St3gal1 St3gal2 St3gal3 St3gal4 St6gal1 St6galnac2 St6galnac3 St6galnac4 siat7B	Rattus norvegicus (Norway rat)

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