GlyCosmos Pathways

Integrated of pathway data, containing glycoproteins and glycans obtained from Reactome and the Metabolism of carbohydrates in Escherichia coli O-antigens obtained from ECODAB. Search by pathway name, species, and protein name.

Source Last Updated
Reactome March 20, 2024
ECODAB April 1, 2019
Displaying entries 251 - 275 of 1070 in total
Pathway Name Protein Name UniProt ID Gene Symbol Organism GlyTouCan ID ▲
IRS-related events triggered by IGF1R
  • Igf-1
  • Igf-2
  • Igf1
  • Igf1r
  • Igf2
  • Irs-1
  • Irs1
  • Irs2
Rattus norvegicus (Norway rat)
Inhibition of TSC complex formation by PKB
  • Akt2
  • Tsc1
  • Tsc2
Rattus norvegicus (Norway rat)
Synaptic adhesion-like molecules
  • Dlg1
  • Dlg3
  • Dlg4
  • Dlgh1
  • Dlgh3
  • Dlgh4
  • Flot1
  • Flot2
  • GluA1
  • GluA3
  • GluN2D
  • Glur1
  • Glur3
  • Glur4
  • Gria1
  • Gria3
  • Gria4
  • Grin1
  • Grin2a
  • Grin2b
  • Grin2c
  • Grin2d
  • Lar
  • Lrfn1
  • Lrfn2
  • Lrfn3
  • Lrfn4
  • Nmdar1
  • Psd95
  • Ptprd
  • Ptprf
  • Ptprs
  • Reg1
  • Reg2
  • Rtn3
  • Salm1
  • Salm2
  • Salm3
  • Salm4
Rattus norvegicus (Norway rat)
Regulation of FZD by ubiquitination
  • Fzd4
  • Fzd5
  • Fzd6
  • Fzd8
  • LOC100360645
  • Lgr5
  • Lgr6
  • Lrp5
  • Lrp6
  • R-spondin2
  • Rnf43
  • Rps27a
  • Rspo1
  • Rspo2
  • Rspo3
  • Rspo4
  • Uba80
  • Ubb
  • Ubbl1
  • Ubc
  • Ubcep1
  • Ubcl1
  • Usp8
  • Wnt3a
  • Znrf3
Rattus norvegicus (Norway rat)
RNA polymerase II transcribes snRNA genes
  • AABR07064983.1
  • AC109542.1
  • Cak
  • Cak1
  • Cbp20
  • Cbp80
  • Ccnk
  • Ccnt1
  • Ccnt2
  • Cdk7
  • Cdk9
  • Cpsf3l
  • Ell
  • Ell2
  • Ell3
  • Gtf2a1
  • Gtf2a2
  • Gtf2b
  • Gtf2e1
  • Gtf2e2
  • Gtf2f1
  • Gtf2f2
  • Ice1
  • Ice2
  • Ints1
  • Ints10
  • Ints11
  • Ints12
  • Ints13
  • Ints14
  • Ints2
  • Ints3
  • Ints4
  • Ints5
  • Ints6
  • Ints7
  • Ints8
  • Ints9
  • LOC120098305
  • Mo15
  • Nabp1
  • Nabp2
  • Narg2
  • Ncbp1
  • Ncbp2
  • Obfc2a
  • Obfc2b
  • Oct-1
  • Otf-1
  • Otf1
  • Pcf11
  • Phax
  • Phf22
  • Polr2a
  • Polr2b
  • Polr2c
  • Polr2d
  • Polr2e
  • Polr2f
  • Polr2g
  • Polr2i
  • Polr2j
  • Pou2f1
  • Pou2f2
  • RGD1562299
  • Rap30
  • Rnuxa
  • Rpap2
  • Rprd1a
  • Rprd1b
  • Rprd2
  • Snapc1
  • Snapc2
  • Snapc3
  • Snapc4
  • Sp1
  • Srrt
  • Ssb1
  • Ssb2
  • Ssu72
  • Supt4h1
  • Supt5h
  • Taf11
  • Taf13
  • Taf2e
  • Taf2g
  • Taf5
  • Taf6
  • Taf8l1
  • Taf9
  • Tafii31
  • Tbp
  • Vwa9
  • Zc3h8
Rattus norvegicus (Norway rat)
Acrosome Reaction and Sperm:Oocyte Membrane Binding
  • Acr
  • Cd9
  • Izumo1
  • Izumo2
  • Izumo3
  • Izumo4
Rattus norvegicus (Norway rat)
Sodium/Calcium exchangers
  • CaMIII
  • Calm3
  • Cam3
  • Camc
  • Nckx1
  • Nckx2
  • Nckx3
  • Nckx6
  • Nclx
  • Ncx1
  • Ncx2
  • Ncx3
  • Slc24a1
  • Slc24a2
  • Slc24a3
  • Slc24a4
  • Slc24a5
  • Slc24a6
  • Slc8a1
  • Slc8a2
  • Slc8a3
  • Slc8b1
  • Sri
Rattus norvegicus (Norway rat)
YAP1- and WWTR1 (TAZ)-stimulated gene expression
  • Kat2b
  • Tbx5
  • Tead1
  • Tead2
  • Tead3
  • Tead4
  • Wwtr1
  • Yap
  • Yap1
  • Yap65
Rattus norvegicus (Norway rat)
Metabolism of steroid hormones
  • Sts
Rattus norvegicus (Norway rat)
Downregulation of TGF-beta receptor signaling
  • Bambi
  • LOC100360645
  • Madh2
  • Madh3
  • Madh7
  • Mtmr4
  • Pmepa1
  • Rps27a
  • Smad2
  • Smad3
  • Smad7
  • Smurf2
  • Strap
  • Tgfb1
  • Tgfbr1
  • Tgfbr2
  • Uba80
  • Ubb
  • Ubbl1
  • Ubc
  • Ubcep1
  • Ubcl1
  • Unrip
Rattus norvegicus (Norway rat)
MAPK3 (ERK1) activation
  • Cdc2
  • Cdc2a
  • Cdk1
  • Cdkn1
  • Erk1
  • Il-6
  • Il6
  • Il6r
  • Il6ra
  • Il6st
  • Jak1
  • Jak2
  • Map2k1
  • Mapk3
  • Mek1
  • Prkm3
  • Prkmk1
  • Ptpn11
  • Tyk2
Rattus norvegicus (Norway rat)
ATF6B (ATF6-beta) activates chaperones
  • Atf6b
  • Mbtps1
  • S1p
  • Ski1
Rattus norvegicus (Norway rat)
The canonical retinoid cycle in rods (twilight vision)
  • Cyp4v2
  • Cyp4v3
  • Lrat
  • Myo7a
  • Rbp-1
  • Rbp1
  • Rbp3
  • Rbp4
  • Rdh10
  • Rdh11
  • Rdh12
  • Rho
  • Rlbp1
  • Rpe65
  • Stra6
  • Tt
  • Ttr
Rattus norvegicus (Norway rat)
Nuclear signaling by ERBB4
  • AABR07043897.1
  • Aph1a
  • Esr
  • Esr1
  • Estr
  • Mgf
  • Ncstn
  • Nr3a1
  • Ps2
  • Psen1
  • Psen2
  • Psenen
  • Psnl1
  • Psnl2
  • Src
  • Stat5a
  • Wwox
  • Yap
  • Yap1
  • Yap65
Rattus norvegicus (Norway rat)
PD-1 signaling
  • AABR07044416.1
  • Arrb2-ps
  • Cd247
  • Cd274
  • Cd3d
  • Cd3e
  • Cd3g
  • Cd4
  • Csk
  • DA1
  • Db2
  • ENSRNOG00000065769
  • ENSRNOG00000065908
  • ENSRNOG00000065955
  • ENSRNOG00000070909
  • H2-Ea
  • Hla-dma
  • Hla-dmb
  • LOC100911800
  • Lck
  • Pdcd1
  • Pdcd1lg2
  • Psmb9
  • Ptph6
  • Ptpn11
  • Ptpn6
  • RT1-Ba
  • RT1-Bb
  • RT1-DOb
  • RT1-Da
  • RT1-Db1
  • RT1-Db2
  • RT1-Ha
  • RT1-Hb-ps1
  • T3d
  • Tap1
  • Tap2
  • Tesb
  • Trbv16
Rattus norvegicus (Norway rat)
Biosynthesis of DHA-derived SPMs
  • Alox12
  • Alox12l
  • Alox15
  • Cox-2
  • Cox2
  • Ptgs2
Rattus norvegicus (Norway rat)
RHOBTB2 GTPase cycle
  • Actg
  • Actg1
  • Actn1
  • Bat1
  • Bat1a
  • Cct2
  • Cct6a
  • Cct7
  • Cctb
  • Cdc37
  • Cul3
  • Ddx39b
  • Hnrnpc
  • Hnrpc
  • Hsp84
  • Hsp86
  • Hsp90aa1
  • Hsp90ab1
  • Hspc3
  • Hspca
  • Hspcb
  • Msi2
  • Myo6
  • Phip
  • Ptk9
  • Rbmx
  • Rbmxrt
  • Rhobtb2
  • Sfrs10
  • Srrm1
  • Stk38
  • Tmod3
  • Tra2b
  • Trp
  • Twf1
  • Txnl1
  • Uap56
Rattus norvegicus (Norway rat)
Synthesis of 15-eicosatetraenoic acid derivatives
  • Alox12l
  • Alox15
  • Alox15b
  • Cox-2
  • Cox2
  • Gpx1
  • Gpx2
  • Gpx4
  • Ptgs2
Rattus norvegicus (Norway rat)
Signal regulatory protein family interactions
  • AABR07008876.1
  • Ash
  • Bit
  • Cd47
  • Dap12
  • Fak2
  • Fyb
  • Fyb1
  • Grb2
  • LOC100909964
  • Mfr
  • Ptk2b
  • Ptpns1
  • Pyk2
  • Scap2
  • Shps1
  • Sirp
  • Sirpa
  • Sirpal1
  • Sirpb2
  • Sirpd
  • Skap2
  • Skap55r
  • Tyrobp
Rattus norvegicus (Norway rat)
Glycerophospholipid catabolism
  • Enpp6
  • Gde1
  • Mir16
  • Pnpla6
Rattus norvegicus (Norway rat)
EPH-Ephrin signaling
  • Efna1
  • Efna2
  • Efna3
  • Efna4
  • Efna5
  • Efnb1
  • Efnb3
  • Ehk-1
  • Ehk-2
  • Ehk-3
  • Ehk2
  • Ehk3
  • Ekh1
  • Elk
  • Epgl1
  • Epha1
  • Epha10
  • Epha2
  • Epha3
  • Epha4
  • Epha5
  • Epha6
  • Epha7
  • Ephb1
  • Ephb2
  • Ephb3
  • Ephb4
  • Ephb6
  • Eplg2
  • Eplg7
  • Epth2
  • LOC686310
  • Lerk1
  • Lerk2
  • Lerk7
  • Rek4
  • Rek7
  • Tyro4
Rattus norvegicus (Norway rat)
Transfer of LPS from LBP carrier to CD14
  • Cd14
  • Lbp
Rattus norvegicus (Norway rat)
RAC2 GTPase cycle
  • AABR07021955.1
  • Abi1
  • Abi2
  • Abr
  • Ankle2
  • Arg357
  • Arhgap1
  • Arhgap17
  • Arhgap21
  • Arhgap26
  • Arhgap32
  • Arhgap35
  • Arhgap42
  • Arhgdia
  • Armcx3
  • Baiap2l1
  • Bcr
  • Borg5
  • Brk1
  • Cav
  • Cav1
  • Cdc42
  • Cdc42ep1
  • Cdc42ep4
  • Cyba
  • Cybb
  • Cyfip1
  • Def6
  • Depdc1b
  • Diaph3
  • Dock10
  • Dock2
  • Dock3
  • Dock4
  • Dsg2
  • Emd
  • Epha2
  • Ergic53
  • Esyt1
  • Fam62a
  • Garre1
  • Git1
  • Git2
  • Grlf1
  • Hem2
  • Iqgap1
  • Itgb1
  • Jik
  • Lamtor1
  • Lbr
  • Lem4
  • Lman1
  • Mbc2
  • Mcam
  • Mcf2
  • Mpp7
  • Mtx1
  • Muc18
  • Nap1
  • Ncf1
  • Ncf2
  • Ncf4
  • Nckap1
  • Nckap1l
  • Nhs
  • Ophn1
  • P190A
  • Pak1
  • Pak2
  • Pak4
  • Pgrmc2
  • Pik3ca
  • Pik3r1
  • Pik3r2
  • Pik3r3
  • Pld2
  • Prex1
  • Rab7
  • Rab7a
  • Rac2
  • Racgap1
  • Rbm39
  • Samm50
  • Slitrk5
  • Stbd1
  • Swap70
  • Syb3
  • Syde1
  • Taok3
  • Tfrc
  • Tiam1
  • Trfr
  • Trio
  • Vamp3
  • Vangl1
  • Vapb
  • Vav
  • Vav1
  • Vav2
  • Vav3
  • Vrk2
  • Wasf2
  • p190ARHOGAP
Rattus norvegicus (Norway rat)
Opioid Signalling
  • Oprm1
  • Pdyn
  • Pomc
  • Pomc2
  • Ror-b
Rattus norvegicus (Norway rat)
Cholesterol biosynthesis
  • AABR07021955.1
  • Acat2
  • Arv1
  • Cyp51
  • Cyp51a1
  • Dhcr24
  • Erg1
  • Fdft1
  • Fdps
  • Ggps1
  • Hmgcr
  • Hmgcs
  • Hmgcs1
  • Hsd17b7
  • Idi1
  • Idi2l3
  • Lbr
  • Lss
  • Mpd
  • Msmo1
  • Mvd
  • Mvk
  • Nsdhl
  • Osc
  • Plpp6
  • Pmvk
  • RGD1564999
  • Sc4mol
  • Sqle
  • Srebf1
  • Srebf2
  • Srebp1
Rattus norvegicus (Norway rat)

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GlyCosmos is a member of the GlySpace Alliance together with GlyGen and Glycomics@ExPASy.

Acknowledgements

Supported by JST NBDC Grant Number JPMJND2204

Partly supported by NIH Common Fund Grant #1U01GM125267-01


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Last updated: August 19, 2024