GlyCosmos Pathways

Integrated of pathway data, containing glycoproteins and glycans obtained from Reactome and the Metabolism of carbohydrates in Escherichia coli O-antigens obtained from ECODAB. Search by pathway name, species, and protein name.

Source Last Updated
Reactome March 20, 2024
ECODAB April 1, 2019
Displaying entries 926 - 950 of 1070 in total
Pathway Name Protein Name UniProt ID Gene Symbol Organism GlyTouCan ID ▲
MET activates PI3K/AKT signaling
  • Ash
  • Gab1
  • Grb2
  • Hgf
  • Met
  • Pik3ca
  • Pik3r1
Rattus norvegicus (Norway rat)
NADE modulates death signalling
  • Bex3
  • Casp2
  • Casp3
  • Cpp32
  • Ich1
  • Nade
  • Ngf
  • Ngfb
  • Ngfr
  • Ngfrap1
  • Tnfrsf16
  • Ywhae
Rattus norvegicus (Norway rat)
Pyruvate metabolism
  • Aat1
  • Fahd1
  • Glo1
  • Gpt
  • Gpt1
  • Hagh
  • LOC100362738
  • Ldh-1
  • Ldh-2
  • Ldh-3
  • Ldh1
  • Ldh2
  • Ldh3
  • Ldha
  • Ldhal6b
  • Ldhb
  • Ldhc
  • Me1
  • Me2
  • Me3
  • Mod-1
  • Mod1
  • Pc
  • Pklr
  • Pkml1
  • Rsp29
  • Vdac1
Rattus norvegicus (Norway rat)
O-linked glycosylation
  • Ago61
  • B3galnt2
  • Dag1
  • Gtdc2
  • Gyltl1b
  • Large1
  • Large2
  • Pomgnt1
  • Pomgnt2
  • Pomk
  • Pomt1
  • Pomt2
  • Sgk196
Rattus norvegicus (Norway rat)
Processing of DNA double-strand break ends
  • ABRAXAS1
  • Abra1
  • Atm
  • Atr
  • Atrip
  • Babam1
  • Babam2
  • Bard1
  • Blm
  • Brca1
  • Brcc3
  • Brcc36
  • Bre
  • Brip1
  • Ccdc98
  • Ccna1
  • Ccna2
  • Cdk2
  • Cdkn2
  • Chek1
  • Chk1
  • Clspn
  • Ctip
  • Dna2
  • ENSRNOG00000064540
  • ENSRNOG00000066901
  • ENSRNOG00000068034
  • Exo1
  • Fam175a
  • H2afx
  • H2ax
  • H2bc1
  • H2bc12l1
  • H2bc6
  • H2bcl1
  • H2bcl2
  • H2bu1
  • H4c16
  • H4c2
  • H4f16
  • H4ft
  • Herc2
  • Hist1h2ba
  • Hist1h2bc
  • Hist1h2bg
  • Hist1h2bo
  • Hist1h2bq
  • Hist1h4b
  • Hist1h4m
  • Hist4
  • Hist4h4
  • Htatip
  • Hus1
  • Kat5
  • LOC100365043
  • LOC100910200
  • LOC120094818
  • LOC684797
  • Mdc1
  • Merit40
  • Mms2
  • Mre11
  • Mre11a
  • Nba1
  • Nbn
  • Nbs1
  • Nsd2
  • Pias4
  • Ppp4c
  • Ppp4r2
  • RGD1564788
  • Rad1
  • Rad17
  • Rad50
  • Rad9a
  • Rad9b
  • Rap80
  • Rbbp8
  • Rfc2
  • Rfc3
  • Rfc4
  • Rfc5
  • Rhno1
  • Rmi1
  • Rmi2
  • Rnf168
  • Rnf8
  • Rpa1
  • Rpa2
  • Rpa3
  • Smt3a
  • Smt3h2
  • Sumo2
  • Th2b
  • Timeless
  • Tip60
  • Tip60b
  • Tipin
  • Tipinl1
  • Top3a
  • Topbp1
  • Tp53bp1
  • Ubce9
  • Ube2i
  • Ube2v2
  • Uev2
  • Uimc1
  • Whsc1
  • Wrn
Rattus norvegicus (Norway rat)
phospho-PLA2 pathway
  • Cpla2
  • Erk2
  • Mapk
  • Mapk1
  • Pla2g4
  • Pla2g4a
  • Prkm1
Rattus norvegicus (Norway rat)
Platelet sensitization by LDL
  • Apob
  • Cpla2
  • Csbp1
  • Csbp2
  • Fgr
  • LOC100909468
  • Lrp8
  • Mapk14
  • Pecam
  • Pecam1
  • Pla2g4
  • Pla2g4a
  • Ppp2ca
  • Ppp2cb
  • Ppp2r1a
  • Ppp2r1b
  • Ppp2r5a
  • Ppp2r5b
  • Ppp2r5c
  • Ppp2r5d
  • Ppp2r5e
  • Ptph6
  • Ptpn11
  • Ptpn6
Rattus norvegicus (Norway rat)
Regulation of CDH11 function
  • Adam19
  • Adam33
  • Amot
  • Angptl4
  • Catnb
  • Cdh11
  • Ctnnb1
  • Ctnnd1
  • Jup
  • Pg
Rattus norvegicus (Norway rat)
Glucagon signaling in metabolic regulation
  • Gcg
  • Gcgr
Rattus norvegicus (Norway rat)
TGF-beta receptor signaling in EMT (epithelial to mesenchymal transition)
  • Arha
  • Arha2
  • Cgn
  • F11r
  • Jam1
  • LOC100360645
  • Par-6a
  • Par3
  • Par6a
  • Pard3
  • Pard6a
  • Pkcz
  • Prkcz
  • Rhoa
  • Rps27a
  • Smurf1
  • Tgfb1
  • Tgfbr1
  • Tgfbr2
  • Uba80
  • Ubb
  • Ubbl1
  • Ubc
  • Ubcep1
  • Ubcl1
Rattus norvegicus (Norway rat)
SCF(Skp2)-mediated degradation of p27/p21
  • Ccna1
  • Ccna2
  • Ccnd1
  • Ccne
  • Ccne1
  • Ccne2
  • Cdk2
  • Cdk4
  • Cdkn1a
  • Cdkn1b
  • Cdkn2
  • Cks1b
  • Cks1l
  • Cul1
  • LOC100360645
  • LOC100360846
  • LOC100365869
  • Lmp10
  • Lmp2
  • Mecl1
  • Mss1
  • Psma1
  • Psma2
  • Psma3
  • Psma4
  • Psma5
  • Psma6
  • Psma7
  • Psmb1
  • Psmb10
  • Psmb2
  • Psmb3
  • Psmb4
  • Psmb5
  • Psmb6
  • Psmb6l
  • Psmb6l1
  • Psmb7
  • Psmb8
  • Psmb9
  • Psmc1
  • Psmc2
  • Psmc3
  • Psmc4
  • Psmc5
  • Psmc6
  • Psmd1
  • Psmd10
  • Psmd11
  • Psmd12
  • Psmd13
  • Psmd14
  • Psmd2
  • Psmd3
  • Psmd5
  • Psmd6
  • Psmd7
  • Psmd8
  • Psmd9
  • Psme1
  • Psme2
  • Psmf1
  • Ptk6
  • RGD1561797
  • Ring12
  • Rps27a
  • Skp1
  • Skp1a
  • Skp2
  • Sug1
  • Tbp1
  • Tbp7
  • Uba80
  • Ubb
  • Ubbl1
  • Ubc
  • Ubcep1
  • Ubcl1
  • p27Kip1
Rattus norvegicus (Norway rat)
Transport of nucleosides and free purine and pyrimidine bases across the plasma membrane
  • Aac1
  • Ant1
  • Ant2
  • Arl184
  • Arl2
  • Arl2bp
  • Bart
  • Bart1
  • Cnt1
  • Cnt2
  • Cnt3
  • Ent1
  • Ent2
  • Ent3
  • Slc25a4
  • Slc25a5
  • Slc28a1
  • Slc28a2
  • Slc28a3
  • Slc29a1
  • Slc29a2
  • Slc29a3
  • Slc29a4
  • Spnt
Rattus norvegicus (Norway rat)
GRB2 events in EGFR signaling
  • Areg
  • Ash
  • Btc
  • Dtr
  • Egf
  • Egfr
  • Ereg
  • Grb2
  • Hbegf
  • Hegfl
  • Hras
  • Hras1
  • Kras
  • Kras2
  • Nras
  • Sdgf
  • Sos1
  • Tgfa
Rattus norvegicus (Norway rat)
Signaling by NODAL
  • Erk1
  • Erk2
  • Foxo3
  • Madh2
  • Madh3
  • Madh4
  • Mapk
  • Mapk1
  • Mapk3
  • Prkm1
  • Prkm3
  • Smad2
  • Smad3
  • Smad4
Rattus norvegicus (Norway rat)
Downstream signal transduction
  • Ash
  • Bcar1
  • Cas
  • Crk
  • Crkas
  • Crkl
  • Crko
  • Grb2
  • Grb7
  • Hras
  • Hras1
  • Kras
  • Kras2
  • Mgf
  • Nck1
  • Nck2
  • Nras
  • Pdgfa
  • Pdgfb
  • Pdgfr
  • Pdgfr1
  • Pdgfra
  • Pdgfrb
  • Pik3ca
  • Pik3cb
  • Pik3r1
  • Pik3r2
  • Plcg1
  • Ptpn11
  • Rapgef1
  • Rasa
  • Rasa1
  • Rpa1
  • Sos1
  • Src
  • Stat1
  • Stat3
  • Stat4
  • Stat5a
  • Stat5b
  • Stat6
Rattus norvegicus (Norway rat)
Serotonin receptors
  • 5ht1a
  • 5ht1b
  • 5ht1c
  • 5ht1f
  • 5ht5a
  • Htr1a
  • Htr1b
  • Htr1c
  • Htr1d
  • Htr1f
  • Htr2
  • Htr2a
  • Htr2b
  • Htr2c
  • Htr4
  • Htr5a
  • Htr6
  • Htr7
  • Srl
Rattus norvegicus (Norway rat)
Retinoid metabolism and transport
  • Agrin
  • Agrn
  • Akr1b10
  • Akr1c1
  • Akr1c21
  • Apoa1
  • Apoa2
  • Apoa4
  • Apob
  • Apoc2
  • Apoc3
  • Apoe
  • Apom
  • Bcdo
  • Bcdo1
  • Bcmo1
  • Bco1
  • Bco2
  • Clps
  • Crbpii
  • Gpc1
  • Gpc2
  • Gpc3
  • Gpc4
  • Gpc5
  • Gpc6
  • Gpihbp1
  • Hsd17b5
  • Hspg1
  • Lpl
  • Lrat
  • Lrp1
  • Lrp10
  • Lrp12
  • Lrp2
  • Lrp8
  • Phlpb
  • Plb1
  • Pnlip
  • Rbp-1
  • Rbp1
  • Rbp2
  • Rbp4
  • Rdh11
  • Sdc1
  • Sdc2
  • Sdc3
  • Sdc4
  • Synd1
  • Synd2
  • Synd3
  • Synd4
  • Tt
  • Ttr
Rattus norvegicus (Norway rat)
PI3K events in ERBB2 signaling
  • Ash
  • Btc
  • Dtr
  • Egf
  • Egfr
  • Erbb2
  • Erbb3
  • Ereg
  • Gab1
  • Grb2
  • Hbegf
  • Hegfl
  • Ndf
  • Neu
  • Nrg1
  • Nrg2
  • Nrg3
  • Ntak
  • Pik3ca
  • Pik3r1
Rattus norvegicus (Norway rat)
Cross-presentation of particulate exogenous antigens (phagosomes)
  • Cd36
  • Cyba
  • Cybb
  • Fat
  • Itgav
  • Itgb5
  • Ncf1
  • Ncf2
  • Ncf4
Rattus norvegicus (Norway rat)
IRS-mediated signalling
  • Irs-1
  • Irs1
  • Irs2
  • Pik3ca
  • Pik3cb
  • Pik3r1
  • Pik3r2
Rattus norvegicus (Norway rat)
MAPK1 (ERK2) activation
  • Erk2
  • Il-6
  • Il6
  • Il6r
  • Il6ra
  • Il6st
  • Jak1
  • Jak2
  • Map2k2
  • Mapk
  • Mapk1
  • Mek2
  • Mkk2
  • Prkm1
  • Prkmk2
  • Ptpn11
  • Tyk2
Rattus norvegicus (Norway rat)
Reactions specific to the hybrid N-glycan synthesis pathway
  • Gnt3
  • Mgat3
Rattus norvegicus (Norway rat)
Beta oxidation of decanoyl-CoA to octanoyl-CoA-CoA
  • Acadm
  • Echs1
  • Had
  • Hadh
  • Hadha
  • Hadhb
  • Hadhsc
  • Mecr
  • Nrbf1
  • Schad
Rattus norvegicus (Norway rat)
Regulation of signaling by CBL
  • Ash
  • Cbl
  • Crk
  • Crkl
  • Crko
  • Fyn
  • Grb2
  • Hck
  • Lyn
  • Pik3ca
  • Pik3cb
  • Pik3cd
  • Pik3r1
  • Pik3r2
  • Pik3r3
  • Rapgef1
  • Syk
  • Vav
  • Vav1
  • Yes1
Rattus norvegicus (Norway rat)
ESR-mediated signaling
  • Erbeta
  • Esr
  • Esr1
  • Esr2
  • Estr
  • Fkbp4
  • Fkbp5
  • Fkbp52
  • Hsp84
  • Hsp86
  • Hsp90aa1
  • Hsp90ab1
  • Hspc3
  • Hspca
  • Hspcb
  • Nr3a1
  • Nr3a2
  • Ppp5c
  • Ptges3
  • Tebp
Rattus norvegicus (Norway rat)

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Supported by JST NBDC Grant Number JPMJND2204

Partly supported by NIH Common Fund Grant #1U01GM125267-01


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