GlyCosmos Pathways

Integrated of pathway data, containing glycoproteins and glycans obtained from Reactome and the Metabolism of carbohydrates in Escherichia coli O-antigens obtained from ECODAB. Search by pathway name, species, and protein name.

Source Last Updated
Reactome November 12, 2024
ECODAB April 1, 2019
Displaying entries 601 - 625 of 998 in total
Pathway Name Protein Name ▲ UniProt ID Gene Symbol Organism GlyTouCan ID
Activation of Ca-permeable Kainate Receptor
  • CaMIII
  • Calm3
  • Cam3
  • Camc
  • Dlg1
  • Dlg3
  • Dlg4
  • Dlgh1
  • Dlgh3
  • Dlgh4
  • Glur5
  • Glur6
  • Glur7
  • Grik1
  • Grik2
  • Grik3
  • Grik4
  • Grik5
  • Ncald
  • Psd95
Rattus norvegicus (Norway rat)
Glycogen breakdown (glycogenolysis)
  • AABR07037995.1
  • Agl
  • CaMIII
  • Calm3
  • Cam3
  • Camc
  • Gaa
  • Gyg
  • Gyg1
  • Lgp
  • Pgm1
  • Phka1
  • Phka2
  • Phkb
  • Phkg
  • Phkg1
  • Phkg2
  • Pygl
  • Pygm
Rattus norvegicus (Norway rat)
Sodium/Calcium exchangers
  • CaMIII
  • Calm3
  • Cam3
  • Camc
  • Nckx1
  • Nckx2
  • Nckx3
  • Nckx6
  • Nclx
  • Ncx1
  • Ncx2
  • Ncx3
  • Slc24a1
  • Slc24a2
  • Slc24a3
  • Slc24a4
  • Slc24a5
  • Slc24a6
  • Slc8a1
  • Slc8a2
  • Slc8a3
  • Slc8b1
  • Sri
Rattus norvegicus (Norway rat)
Reduction of cytosolic Ca++ levels
  • Atp2a1
  • Atp2a2
  • Atp2a3
  • Atp2b1
  • Atp2b3
  • Atp2b4
  • CaMIII
  • Calm3
  • Cam3
  • Camc
  • Ncx1
  • Ncx2
  • Ncx3
  • Pmca3
  • Slc8a1
  • Slc8a2
  • Slc8a3
  • Sri
Rattus norvegicus (Norway rat)
Interleukin-27 signaling
  • Canx
  • Crlf1
  • Ebi3
  • Il27
  • Il6st
  • Jak1
  • Jak2
  • Stat1
  • Stat3
  • Stat4
  • Tyk2
Rattus norvegicus (Norway rat)
Interleukin-35 Signalling
  • Canx
  • Ebi3
  • Il12a
  • Il12rb2
  • Il6st
  • Jak1
  • Jak2
  • Stat1
  • Stat3
  • Stat4
  • Tyk2
Rattus norvegicus (Norway rat)
Trafficking and processing of endosomal TLR
  • Cnpy3
  • Cts7l2
  • Ctsb
  • Ctsk
  • Ctsl
  • Ctsl1
  • Ctsll3
  • Ctss
  • Grp94
  • Hsp90b1
  • Hspc4
  • Lgmn
  • Prsc1
  • RGD1308751
  • Tlr7
  • Tlr8
  • Tlr9
  • Tra1
  • Unc93b1
Rattus norvegicus (Norway rat)
PKA-mediated phosphorylation of key metabolic factors
  • Mlxipl
  • Wbscr14
Rattus norvegicus (Norway rat)
Reversible hydration of carbon dioxide
  • Ca1
  • Ca2
  • Ca3
  • Ca4
  • Ca5
  • Ca5a
  • Ca5b
  • Car1
  • Car12
  • Car13
  • Car14
  • Car5b
  • Car6
  • Car9
Rattus norvegicus (Norway rat)
Fibronectin matrix formation
  • Ceacam1
  • Fn1
  • Itga5
  • Itgb1
Rattus norvegicus (Norway rat)
IL-6-type cytokine receptor ligand interactions
  • Clcf1
  • Cntf
  • Cntfr
  • Crlf1
  • Ctf1
  • Il11
  • Il11ra1
  • Il31
  • Il31ra
  • Il6st
  • Jak1
  • Jak2
  • Lif
  • Lifr
  • Osm
  • Osmr
  • Osmrb
  • Tyk2
Rattus norvegicus (Norway rat)
Signaling by Type 1 Insulin-like Growth Factor 1 Receptor (IGF1R)
  • Cilp
  • Igf-1
  • Igf-2
  • Igf1
  • Igf1r
  • Igf2
Rattus norvegicus (Norway rat)
Cooperation of PDCL (PhLP1) and TRiC/CCT in G-protein beta folding
  • Cct1
  • Cct2
  • Cct3
  • Cct4
  • Cct5
  • Cct6a
  • Cct6b
  • Cct7
  • Cct8
  • Ccta
  • Cctb
  • Ck2n
  • Csnk2a1
  • Csnk2a2
  • Csnk2b
  • Gnb1
  • Gnb2
  • Gnb3
  • Gnb4
  • Gnb5
  • LOC363658
  • Pdcl
  • Rgs7
  • Rgs9
  • Tcp1
Rattus norvegicus (Norway rat)
Condensation of Prometaphase Chromosomes
  • Ck2n
  • Csnk2a1
  • Csnk2a2
  • Csnk2b
  • Ncapd2
  • Ncapg
  • Ncaph
  • Smc2
  • Smc4
Rattus norvegicus (Norway rat)
WNT mediated activation of DVL
  • Ck1e-2
  • Ck2n
  • Csnk1e
  • Csnk2a1
  • Csnk2a2
  • Csnk2b
  • Dvl1
  • Dvl2
  • Dvl3
  • LOC100361515
  • Pip5k1b
Rattus norvegicus (Norway rat)
Signal transduction by L1
  • Caml1
  • Ck2n
  • Csnk2a1
  • Csnk2a2
  • Csnk2b
  • Egfr
  • Erk1
  • Erk2
  • Fgfr1
  • Flg
  • Itga2b
  • Itga5
  • Itga9
  • Itgav
  • Itgb1
  • Itgb3
  • L1cam
  • Map2k1
  • Map2k2
  • Mapk
  • Mapk1
  • Mapk3
  • Mek1
  • Mek2
  • Mkk2
  • Ncam
  • Ncam1
  • Nrp1
  • Pak1
  • Prkm1
  • Prkm3
  • Prkmk1
  • Prkmk2
  • Rac
  • Rac1
  • Vav2
Rattus norvegicus (Norway rat)
Formation of the cornified envelope
  • AABR07044375.1
  • Bsp1
  • Casp14
  • Cdsn
  • Cela2a
  • Dsc1
  • Dsc2
  • Dsc3
  • Dsg1
  • Dsg2
  • Dsg3
  • Dsg4
  • Dsp
  • Ela2
  • Ela2a
  • Evpl
  • Jup
  • Kaz
  • Kazn
  • Klk12
  • Klk13
  • Klk14
  • Klk5
  • Klk8
  • Klnk
  • Klnl
  • Klnm
  • Lipk
  • Lipm
  • Lipn
  • Nrpn
  • Perp
  • Pg
  • Pkp1
  • Pkp2
  • Pkp3
  • Pkp4
  • Ppl
  • Prss19
  • Rptn
  • Spink5
  • Spink5l1
  • Spink6
  • Sprr3
  • Stfa2l3
  • Tgm1
Rattus norvegicus (Norway rat)
Interleukin-1 processing
  • Casp1
  • Ctsg
  • Gsdmd
  • Igif
  • Il18
  • Il1a
  • Il1b
  • Il1bc
  • Il1bce
  • Nfkb2
  • Rela
Rattus norvegicus (Norway rat)
Other interleukin signaling
  • Casp3
  • Cd4
  • Cpp32
  • Csf1
  • Csf1r
  • Csfm
  • Csfmr
  • Fms
  • IL16
  • Il16
  • Il34
  • Ptprz
  • Ptprz1
  • Ptpz
  • Sap
  • Sdc1
  • Snap
  • Snap25
  • Stx1a
  • Stx3
  • Stx3a
  • Stx4
  • Stx4a
  • Stxbp2
  • Syb2
  • Synd1
  • Txlna
  • Unc18b
  • Vamp2
Rattus norvegicus (Norway rat)
Breakdown of the nuclear lamina
  • Casp6
  • Lmn1
  • Lmna
  • Lmnb1
  • Mch2
Rattus norvegicus (Norway rat)
TRIF-mediated programmed cell death
  • Casp8
  • Cd14
  • Fadd
  • Ly96
  • Plin3
  • Rip3
  • Ripk1
  • Ripk3
  • Ticam1
  • Ticam2
  • Tlr4
Rattus norvegicus (Norway rat)
Ligand-dependent caspase activation
  • Casp8
  • Cd14
  • Fadd
  • Ly96
  • Plin3
  • Ripk1
  • Ticam1
  • Ticam2
  • Tlr4
Rattus norvegicus (Norway rat)
FasL/ CD95L signaling
  • Apt1
  • Apt1Lg1
  • Casp8
  • Cd95l
  • Fadd
  • Fas
  • Fasl
  • Faslg
  • Tnfrsf6
  • Tnfsf6
Rattus norvegicus (Norway rat)
LRR FLII-interacting protein 1 (LRRFIP1) activates type I IFN production
  • Catnb
  • Cbp
  • Crebbp
  • Ctnnb1
  • Ep300
  • Irf3
Rattus norvegicus (Norway rat)
RUNX3 regulates WNT signaling
  • Catnb
  • Ctnnb1
  • Lef1
  • Runx3
  • Tcf7
  • Tcf7l1
  • Tcf7l2
Rattus norvegicus (Norway rat)

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GlyCosmos is a member of the GlySpace Alliance together with GlyGen and Glycomics@ExPASy.

Acknowledgements

Supported by JST NBDC Grant Number JPMJND2204

Partly supported by NIH Common Fund Grant #1U01GM125267-01


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Last updated: February 17, 2025