GlyCosmos Pathways

Integrated of pathway data, containing glycoproteins and glycans obtained from Reactome and the Metabolism of carbohydrates in Escherichia coli O-antigens obtained from ECODAB. Search by pathway name, species, and protein name.

Source Last Updated
Reactome March 20, 2024
ECODAB April 1, 2019
Displaying entries 651 - 675 of 1070 in total
Pathway Name Protein Name ▲ UniProt ID Gene Symbol Organism GlyTouCan ID
PKA-mediated phosphorylation of key metabolic factors
  • Mlxipl
  • Wbscr14
Rattus norvegicus (Norway rat)
Reversible hydration of carbon dioxide
  • Ca1
  • Ca2
  • Ca3
  • Ca4
  • Ca5
  • Ca5a
  • Ca5b
  • Car1
  • Car12
  • Car13
  • Car14
  • Car5b
  • Car6
  • Car9
Rattus norvegicus (Norway rat)
Fibronectin matrix formation
  • Ceacam1
  • Fn1
  • Itga5
  • Itgb1
Rattus norvegicus (Norway rat)
IL-6-type cytokine receptor ligand interactions
  • Clcf1
  • Cntf
  • Cntfr
  • Crlf1
  • Ctf1
  • Il11
  • Il11ra1
  • Il31
  • Il31ra
  • Il6st
  • Jak1
  • Jak2
  • Lif
  • Lifr
  • Osm
  • Osmr
  • Osmrb
  • Tyk2
Rattus norvegicus (Norway rat)
Signaling by Type 1 Insulin-like Growth Factor 1 Receptor (IGF1R)
  • Cilp
  • Igf-1
  • Igf-2
  • Igf1
  • Igf1r
  • Igf2
Rattus norvegicus (Norway rat)
Cooperation of PDCL (PhLP1) and TRiC/CCT in G-protein beta folding
  • Cct1
  • Cct2
  • Cct3
  • Cct4
  • Cct5
  • Cct6a
  • Cct6b
  • Cct7
  • Cct8
  • Ccta
  • Cctb
  • Ck2n
  • Csnk2a1
  • Csnk2a2
  • Csnk2b
  • Gnb1
  • Gnb2
  • Gnb3
  • Gnb4
  • Gnb5
  • LOC363658
  • Pdcl
  • Rgs7
  • Rgs9
  • Tcp1
Rattus norvegicus (Norway rat)
Condensation of Prometaphase Chromosomes
  • Ck2n
  • Csnk2a1
  • Csnk2a2
  • Csnk2b
  • Ncapd2
  • Ncapg
  • Ncaph
  • Smc2
  • Smc4
Rattus norvegicus (Norway rat)
WNT mediated activation of DVL
  • Ck1e-2
  • Ck2n
  • Csnk1e
  • Csnk2a1
  • Csnk2a2
  • Csnk2b
  • Dvl1
  • Dvl2
  • Dvl3
  • LOC100361515
  • Pip5k1b
Rattus norvegicus (Norway rat)
Signal transduction by L1
  • Caml1
  • Ck2n
  • Csnk2a1
  • Csnk2a2
  • Csnk2b
  • Egfr
  • Erk1
  • Erk2
  • Fgfr1
  • Flg
  • Itga2b
  • Itga5
  • Itga9
  • Itgav
  • Itgb1
  • Itgb3
  • L1cam
  • Map2k1
  • Map2k2
  • Mapk
  • Mapk1
  • Mapk3
  • Mek1
  • Mek2
  • Mkk2
  • Ncam
  • Ncam1
  • Nrp1
  • Pak1
  • Prkm1
  • Prkm3
  • Prkmk1
  • Prkmk2
  • Rac
  • Rac1
  • Vav2
Rattus norvegicus (Norway rat)
Formation of the cornified envelope
  • AABR07044375.1
  • Bsp1
  • Casp14
  • Cdsn
  • Cela2a
  • Dsc1
  • Dsc2
  • Dsc3
  • Dsg1
  • Dsg2
  • Dsg3
  • Dsg4
  • Dsp
  • Ela2
  • Ela2a
  • Evpl
  • Jup
  • Kaz
  • Kazn
  • Klk12
  • Klk13
  • Klk14
  • Klk5
  • Klk8
  • Klnk
  • Klnl
  • Klnm
  • Lipk
  • Lipm
  • Lipn
  • Nrpn
  • Perp
  • Pg
  • Pkp1
  • Pkp2
  • Pkp3
  • Pkp4
  • Ppl
  • Prss19
  • Rptn
  • Spink5
  • Spink5l1
  • Spink6
  • Sprr3
  • Stfa2l3
  • Tgm1
Rattus norvegicus (Norway rat)
Interleukin-1 processing
  • Casp1
  • Ctsg
  • Gsdmd
  • Igif
  • Il18
  • Il1a
  • Il1b
  • Il1bc
  • Il1bce
  • Nfkb2
  • Rela
Rattus norvegicus (Norway rat)
Apoptosis induced DNA fragmentation
  • Cad
  • Casp3
  • Cpp32
  • Dffa
  • Dffb
  • H1-0
  • H1-1
  • H1-4
  • H1-5
  • H1f0
  • H1f2
  • H1f4
  • H1f5
  • HIf5
  • Hist1h1a
  • Hist1h1b
  • Hmg-1
  • Hmg1
  • Hmg2
  • Hmgb1
  • Hmgb1-ps33
  • Hmgb1-ps4
  • Hmgb1l1
  • Hmgb1l2
  • Hmgb1l3
  • Hmgb1l5
  • Hmgb2
  • Kpna1
  • Kpnb1
  • LOC108349189
  • LOC108350839
Rattus norvegicus (Norway rat)
Other interleukin signaling
  • Casp3
  • Cd4
  • Cpp32
  • Csf1
  • Csf1r
  • Csfm
  • Csfmr
  • Fms
  • IL16
  • Il16
  • Il34
  • Ptprz
  • Ptprz1
  • Ptpz
  • Sap
  • Sdc1
  • Snap
  • Snap25
  • Stx1a
  • Stx3
  • Stx3a
  • Stx4
  • Stx4a
  • Stxbp2
  • Syb2
  • Synd1
  • Txlna
  • Unc18b
  • Vamp2
Rattus norvegicus (Norway rat)
Breakdown of the nuclear lamina
  • Casp6
  • Lmn1
  • Lmna
  • Lmnb1
  • Mch2
Rattus norvegicus (Norway rat)
TRIF-mediated programmed cell death
  • Casp8
  • Cd14
  • Fadd
  • Ly96
  • Plin3
  • Rip3
  • Ripk1
  • Ripk3
  • Ticam1
  • Ticam2
  • Tlr4
Rattus norvegicus (Norway rat)
Ligand-dependent caspase activation
  • Casp8
  • Cd14
  • Fadd
  • Ly96
  • Plin3
  • Ripk1
  • Ticam1
  • Ticam2
  • Tlr4
Rattus norvegicus (Norway rat)
FasL/ CD95L signaling
  • Apt1
  • Apt1Lg1
  • Casp8
  • Cd95l
  • Fadd
  • Fas
  • Fasl
  • Faslg
  • Tnfrsf6
  • Tnfsf6
Rattus norvegicus (Norway rat)
LRR FLII-interacting protein 1 (LRRFIP1) activates type I IFN production
  • Catnb
  • Cbp
  • Crebbp
  • Ctnnb1
  • Ep300
  • Irf3
Rattus norvegicus (Norway rat)
RUNX3 regulates WNT signaling
  • Catnb
  • Ctnnb1
  • Lef1
  • Runx3
  • Tcf7
  • Tcf7l1
  • Tcf7l2
Rattus norvegicus (Norway rat)
Assembly of collagen fibrils and other multimeric structures
  • Col10a1
  • Col11a1
  • Col11a2
  • Col15a1
  • Col18a1
  • Col1a1
  • Col1a2
  • Col2a1
  • Col3a1
  • Col4a1
  • Col4a2
  • Col4a3
  • Col4a4
  • Col4a5
  • Col5a1
  • Col5a2
  • Col5a3
  • Col8a1
  • Col8a2
  • Cts7l2
  • Ctsb
  • Ctsl
  • Ctsl1
  • Ctsll3
  • Ctss
  • LOC100909752
  • LOC100911572
  • Mmp-7
  • Mmp13
  • Mmp20
  • Mmp3
  • Mmp7
  • Mmp9
  • RGD1308751
Rattus norvegicus (Norway rat)
RUNX1 regulates transcription of genes involved in differentiation of keratinocytes
  • Cts7l2
  • Ctsk
  • Ctsl
  • Ctsl1
  • Ctsll3
  • RGD1308751
  • Serpinb13
Rattus norvegicus (Norway rat)
RHOH GTPase cycle
  • Arhgdia
  • Arhgdib
  • Arhgdig
  • Cav
  • Cav1
  • Csk
  • Dbt
  • Fam91a1
  • Garnl1
  • Gbas
  • Jup
  • LOC498174
  • Lamtor1
  • Lck
  • Mtr
  • Nbc
  • Nbc2
  • Nbc3
  • Nbcn1
  • Nipsnap2
  • Nsfl1c
  • Pak1
  • Pak2
  • Pak4
  • Pak5
  • Pak6
  • Pak7
  • Pg
  • RGD1310313
  • Rab7
  • Rab7a
  • Ralgapa1
  • Rhoh
  • Rock1
  • Rock2
  • Slc1a5
  • Slc4a7
  • Stom
  • Syb3
  • Tfrc
  • Tmem59
  • Trfr
  • Tuba1b
  • Tuba2
  • Tulip1
  • Uaca
  • Vamp3
  • Vangl1
  • Vcp
  • Wdr11
  • Zap70
Rattus norvegicus (Norway rat)
NOSTRIN mediated eNOS trafficking
  • Cav
  • Cav1
  • Dnm2
  • Dyn2
  • Nos3
  • Nostrin
Rattus norvegicus (Norway rat)
Estrogen-dependent gene expression
  • AC109542.1
  • Aib1
  • Aml1
  • Atf2
  • Carm1
  • Cbfa2
  • Cbfb
  • Cbp
  • Ccnt1
  • Cdk9
  • Cited1
  • Crebbp
  • Ddx5
  • ENSRNOG00000062927
  • ENSRNOG00000064540
  • ENSRNOG00000066901
  • ENSRNOG00000068034
  • Ep300
  • Esp3
  • Esr
  • Esr1
  • Estr
  • Fkbp4
  • Fkbp52
  • Fos
  • Foxa1
  • Greb1
  • Gtf2a1
  • Gtf2a2
  • Gtf2f1
  • Gtf2f2
  • H2ab3
  • H2ac10
  • H2ac18
  • H2ac4
  • H2afb3
  • H2afx
  • H2aj
  • H2ax
  • H2az2
  • H2bc1
  • H2bc12l1
  • H2bc6
  • H2bcl1
  • H2bcl2
  • H2bu1
  • H3-3b
  • H3.3b
  • H3c13
  • H3f3b
  • H4c16
  • H4c2
  • H4f16
  • H4ft
  • Hdac1
  • Hist1h2ba
  • Hist1h2bc
  • Hist1h2bg
  • Hist1h2bo
  • Hist1h2bq
  • Hist1h4b
  • Hist1h4m
  • Hist2h2aa3
  • Hist2h3c2
  • Hist4
  • Hist4h4
  • Hnf3a
  • Hrmt1l2
  • Hsp84
  • Hsp86
  • Hsp90aa1
  • Hsp90ab1
  • Hspc3
  • Hspca
  • Hspcb
  • Htatip
  • Jun
  • Kat2b
  • Kat5
  • Kdm1a
  • Kdm4b
  • LOC100365043
  • LOC100910200
  • LOC120097726
  • LOC120098305
  • LOC684797
  • Ncoa1
  • Ncoa3
  • Nr3a1
  • Nr3c3
  • Nr5a2
  • Nrip1
  • Oct-1
  • Otf-1
  • Otf1
  • Pgr
  • Polr2a
  • Polr2b
  • Polr2c
  • Polr2d
  • Polr2e
  • Polr2f
  • Polr2g
  • Polr2i
  • Polr2j
  • Pou2f1
  • Prmt1
  • Prmt4
  • Ptges3
  • RGD1564091
  • Rap30
  • Rjg-9
  • Runx1
  • Tbp
  • Tcf-3a
  • Tcf3a
  • Tebp
  • Th2b
  • Tip60
  • Tip60b
  • Tle3
  • Yy1
  • Zfp217
  • yy1
Rattus norvegicus (Norway rat)
SMAD2/SMAD3:SMAD4 heterotrimer regulates transcription
  • AABR07035338.1
  • Ccnc
  • Ccnk
  • Ccnt1
  • Ccnt2
  • Cdk8
  • Cdk9
  • E2f4
  • E2f5
  • Erk1
  • Erk2
  • Fur
  • Furin
  • LOC100360645
  • MGC112830
  • Madh2
  • Madh3
  • Madh4
  • Madh7
  • Mapk
  • Mapk1
  • Mapk3
  • Men1
  • Pcsk3
  • Prkm1
  • Prkm3
  • Rbl1
  • Rnf111
  • Rps27a
  • Smad2
  • Smad3
  • Smad4
  • Smad7
  • Sp1
  • Tfdp1
  • Tfdp2
  • Uba80
  • Ubb
  • Ubbl1
  • Ubc
  • Ubcep1
  • Ubcl1
  • Wwtr1
Rattus norvegicus (Norway rat)

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GlyCosmos is a member of the GlySpace Alliance together with GlyGen and Glycomics@ExPASy.

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Supported by JST NBDC Grant Number JPMJND2204

Partly supported by NIH Common Fund Grant #1U01GM125267-01


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