GlyCosmos Pathways

Integrated of pathway data, containing glycoproteins and glycans obtained from Reactome and the Metabolism of carbohydrates in Escherichia coli O-antigens obtained from ECODAB. Search by pathway name, species, and protein name.

Source Last Updated
Reactome March 20, 2024
ECODAB April 1, 2019
Displaying entries 676 - 700 of 1070 in total
Pathway Name Protein Name UniProt ID Gene Symbol Organism ▲ GlyTouCan ID
Cilium Assembly
  • Atat1
  • Mec17
Rattus norvegicus (Norway rat)
Toll Like Receptor 4 (TLR4) Cascade
  • Bpi
  • Cd14
  • Cd180
  • Dnm
  • Dnm1
  • Dnm2
  • Dnm3
  • Dyn2
  • Dyn3
  • Lbp
  • Ly86
  • Ly96
  • Plcg2
  • Ptpn4
  • Ticam2
  • Tlr4
Rattus norvegicus (Norway rat)
Adherens junctions interactions
  • Af6
  • Afdn
  • Ang
  • Ang2
  • Cad7
  • Cadm1
  • Cadm2
  • Cadm3
  • Cdh1
  • Cdh10
  • Cdh11
  • Cdh12
  • Cdh13
  • Cdh15
  • Cdh17
  • Cdh18
  • Cdh2
  • Cdh24
  • Cdh3
  • Cdh5
  • Cdh6
  • Cdh7
  • Cdh8
  • Cdh9
  • Igsf4b
  • Igsf4d
  • Kcad
  • Mllt4
  • Necl1
  • Necl3
  • Nectin1
  • Nectin2
  • Nectin3
  • Nectin4
  • Pvrl1
  • Pvrl2
  • Raa2
  • SynCam1
Rattus norvegicus (Norway rat)
Other interleukin signaling
  • Casp3
  • Cd4
  • Cpp32
  • Csf1
  • Csf1r
  • Csfm
  • Csfmr
  • Fms
  • IL16
  • Il16
  • Il34
  • Ptprz
  • Ptprz1
  • Ptpz
  • Sap
  • Sdc1
  • Snap
  • Snap25
  • Stx1a
  • Stx3
  • Stx3a
  • Stx4
  • Stx4a
  • Stxbp2
  • Syb2
  • Synd1
  • Txlna
  • Unc18b
  • Vamp2
Rattus norvegicus (Norway rat)
Extra-nuclear estrogen signaling
  • Akt1
  • Areg
  • Btc
  • CaMIII
  • Calm3
  • Cam3
  • Camc
  • Cav
  • Cav1
  • Cav2
  • Dtr
  • Egf
  • Egfr
  • Erbeta
  • Ereg
  • Esr
  • Esr1
  • Esr2
  • Estr
  • Fak
  • Fak1
  • Gnai-1
  • Gnai-2
  • Gnai-3
  • Gnai1
  • Gnai2
  • Gnai3
  • Gnat-3
  • Gnat3
  • Hbegf
  • Hegfl
  • Hrmt1l2
  • Hsp86
  • Hsp90aa1
  • Hspca
  • Igf1r
  • Mmp-7
  • Mmp2
  • Mmp3
  • Mmp7
  • Mmp9
  • Nos3
  • Nr3a1
  • Nr3a2
  • Pik3ca
  • Pik3r1
  • Pik3r2
  • Pik3r3
  • Prmt1
  • Ptk2
  • S1pr3
  • Sdgf
  • Serz
  • Shc1
  • Sphk1
  • Src
  • Strn
  • Tgfa
  • Zdhhc7
Rattus norvegicus (Norway rat)
RUNX1 regulates genes involved in megakaryocyte differentiation and platelet function
  • Aml1
  • Ash2l
  • Cbfa2
  • Cbfb
  • ENSRNOG00000062927
  • ENSRNOG00000064540
  • ENSRNOG00000066901
  • ENSRNOG00000068034
  • Ep300
  • Gata1
  • H2ab3
  • H2ac10
  • H2ac18
  • H2ac4
  • H2afb3
  • H2afx
  • H2aj
  • H2ax
  • H2az2
  • H2bc1
  • H2bc12l1
  • H2bc6
  • H2bcl1
  • H2bcl2
  • H2bu1
  • H3-3b
  • H3.3b
  • H3c13
  • H3f3b
  • H4c16
  • H4c2
  • H4f16
  • H4ft
  • Hdac1
  • Hist1h2ba
  • Hist1h2bc
  • Hist1h2bg
  • Hist1h2bo
  • Hist1h2bq
  • Hist1h4b
  • Hist1h4m
  • Hist2h2aa3
  • Hist2h3c2
  • Hist4
  • Hist4h4
  • Hrmt1l2
  • Kat2b
  • Kmt2a
  • Kmt2b
  • Kmt2c
  • LOC100365043
  • LOC100910200
  • LOC120097726
  • LOC684797
  • Mll
  • Mll1
  • Prmt1
  • Rbbp5
  • Runx1
  • Setd1a
  • Setd1b
  • Sin3a
  • Sin3b
  • Th2b
  • Wdr5
  • Zfpm1
Rattus norvegicus (Norway rat)
Presynaptic depolarization and calcium channel opening
  • Cach4
  • Cach5
  • Cach6
  • Cacn3
  • Cacna1a
  • Cacna1b
  • Cacna1e
  • Cacna2d2
  • Cacna2d3
  • Cacnb1
  • Cacnb2
  • Cacnb3
  • Cacnb4
  • Cacng2
  • Cacng4
  • Cacnl1a4
  • Cacnl1a5
  • Cacnl1a6
  • Cacnlb1
  • Cacnlb2
  • Cacnlb3
  • Stg
Rattus norvegicus (Norway rat)
Loss of Nlp from mitotic centrosomes
  • AABR07000222.1
  • Actr1a
  • Akap9
  • Alms1
  • Azi1
  • Ccdc5
  • Ccp110
  • Cdc2
  • Cdc2a
  • Cdk1
  • Cdk5rap2
  • Cdkn1
  • Cenpj
  • Cep131
  • Cep135
  • Cep152
  • Cep164
  • Cep192
  • Cep250
  • Cep290
  • Cep41
  • Cep43
  • Cep57
  • Cep63
  • Cep70
  • Cep72
  • Cep76
  • Cep78
  • Cetn2
  • Ck1e-2
  • Ckap5
  • Clasp1
  • Csnk1d
  • Csnk1e
  • Ctrn1
  • Dctn1
  • Dctn2
  • Dctn3l1
  • Dhc1
  • Dnch1
  • Dnchc1
  • Dnci2
  • Dncic2
  • Dncl1
  • Dnclc1
  • Dnec1
  • Dyhc
  • Dync1h1
  • Dync1i2
  • Dynll1
  • Fgfr1op
  • Haus1
  • Haus4
  • Haus5
  • Haus6
  • Haus7
  • Haus8
  • Hckid
  • Hice1
  • Hsp86
  • Hsp90aa1
  • Hspca
  • LOC309692
  • Lis-1
  • Lis1
  • Map1c
  • Mapre1
  • Nde1
  • Nedd1
  • Nek2l1
  • Ninl
  • Nude
  • Nude1
  • Ny-sar-48
  • Odf2
  • Odf84
  • Ofd1
  • Pafah1b1
  • Pafaha
  • Pcm1
  • Pcnt
  • Pin
  • Plk
  • Plk1
  • Plk4
  • Ppp2r1a
  • Prkaca
  • Prkar2b
  • Sak
  • Sdccag8
  • Sfi1
  • Ssna1
  • Tsga14
  • Tuba1
  • Tuba1a
  • Tuba4
  • Tuba4a
  • Tubb2c
  • Tubb4b
  • Tubb5
  • Tubg
  • Tubg1
  • Ywhae
  • Ywhag
Rattus norvegicus (Norway rat)
SHC1 events in ERBB2 signaling
  • Btc
  • Dtr
  • Egf
  • Egfr
  • Erbb2
  • Erbb3
  • Ereg
  • Hbegf
  • Hegfl
  • Ndf
  • Neu
  • Nrg1
  • Nrg2
  • Nrg3
  • Ntak
  • Pkca
  • Pkcd
  • Pkce
  • Prkca
  • Prkcd
  • Prkce
  • Ptpn12
  • Shc1
Rattus norvegicus (Norway rat)
Ion channel transport
  • Aif1
  • Atp6ap1
  • Atp6b2
  • Atp6c
  • Atp6ip1
  • Atp6l
  • Atp6n1
  • Atp6s1
  • Atp6s14
  • Atp6v0a1
  • Atp6v0a4
  • Atp6v0b
  • Atp6v0c
  • Atp6v0d1
  • Atp6v0d2
  • Atp6v0e
  • Atp6v0e1
  • Atp6v0e2
  • Atp6v1a
  • Atp6v1b1
  • Atp6v1b2
  • Atp6v1c1
  • Atp6v1c2
  • Atp6v1d
  • Atp6v1e1
  • Atp6v1e2
  • Atp6v1f
  • Atp6v1g1
  • Atp6v1g2
  • Atp6v1g3
  • Atp6v1h
  • Atpl
  • Bat1a
  • Cdk2ap1-ps2
  • Cdk2ap1-ps3
  • Cdk2ap1-ps4
  • Cdk2ap1-ps5
  • Cdk2ap1-ps6
  • Dsr1
  • E230034O05Rik
  • LOC224733l-3
  • LOC224733l-4
  • LOC224733l-5
  • LOC224733l-6
  • LOC224733l-7
  • LOC224733l-8
  • Lst1
  • RT1-CE12
  • RT1-CE3
  • RT1-CE5
  • RT1-CE6
  • RT1-CE8
  • RT1-CE9
  • Sacm2l-ps3
  • Sacm2l-ps4
  • Sacm2l-ps5
  • Sacm2l-ps6
  • Sacm2l-ps7
  • Tcirg1
  • Tnf
  • Vat2
  • Vatf
  • Vpp1
Rattus norvegicus (Norway rat)
Fructose catabolism
  • Aldh
  • Aldh1a1
  • Aldob
  • Dak
  • Glyctk
  • Khk
  • Tkfc
Rattus norvegicus (Norway rat)
Interleukin-9 signaling
  • Il9
  • Il9r
  • Jak1
  • Jak3
  • Mgf
  • Stat1
  • Stat3
  • Stat4
  • Stat5a
  • Stat5b
Rattus norvegicus (Norway rat)
Cytosolic sensors of pathogen-associated DNA
  • Aim2
  • Mre11
  • Mre11a
Rattus norvegicus (Norway rat)
MAP2K and MAPK activation
  • A-raf
  • Apbb1ip
  • Araf
  • Araf1
  • Arrb1
  • Arrb2
  • Braf
  • Cnksr1
  • Cnksr2
  • Csk
  • ENSRNOG00000066475
  • Erk1
  • Erk2
  • Fga
  • Fgb
  • Fgg
  • Fn1
  • Hras
  • Hras1
  • Il17rd
  • Iqgap1
  • Itga2b
  • Itgb3
  • Kras
  • Kras2
  • Krev1
  • Ksr1
  • Ksr2
  • Lamtor3
  • Map2k1
  • Map2k1ip1
  • Map2k2
  • Mapk
  • Mapk1
  • Mapk3
  • Mark3
  • Mek1
  • Mek2
  • Mkk2
  • Morg1
  • Nras
  • Pbp
  • Pebp
  • Pebp1
  • Prkm1
  • Prkm3
  • Prkmk1
  • Prkmk2
  • RGD1562674
  • Raf
  • Raf1
  • Rap1a
  • Rap1b
  • Src
  • Tln1
  • Vcl
  • Wdr83
  • Ywhab
Rattus norvegicus (Norway rat)
Urea cycle
  • Arg1
  • Arg2
  • Asl
  • Cps1
  • Nags
  • Otc
  • Slc25a15
  • Slc25a2
Rattus norvegicus (Norway rat)
IL-6-type cytokine receptor ligand interactions
  • Clcf1
  • Cntf
  • Cntfr
  • Crlf1
  • Ctf1
  • Il11
  • Il11ra1
  • Il31
  • Il31ra
  • Il6st
  • Jak1
  • Jak2
  • Lif
  • Lifr
  • Osm
  • Osmr
  • Osmrb
  • Tyk2
Rattus norvegicus (Norway rat)
CREB phosphorylation
  • Atf1
  • Creb-1
  • Creb1
  • Mapkapk1a
  • Mapkapk2
  • Rps6ka1
  • Rps6ka2
  • Rps6ka3
  • Rps6ka5
  • Rsk1
Rattus norvegicus (Norway rat)
NOTCH3 Activation and Transmission of Signal to the Nucleus
  • Adam10
  • Aph1a
  • Dll1
  • Dll4
  • Egf
  • Egfr
  • Jag1
  • Jag2
  • LOC100360645
  • Madm
  • Ncstn
  • Notch3
  • Ps2
  • Psen1
  • Psen2
  • Psenen
  • Psnl1
  • Psnl2
  • Rps27a
  • Uba80
  • Ubb
  • Ubbl1
  • Ubc
  • Ubcep1
  • Ubcl1
  • Wwp2
Rattus norvegicus (Norway rat)
Gluconeogenesis
  • Aldoa
  • Aldob
  • Aldoc
  • ENSRNOG00000066746
  • Eno-2
  • Eno-3
  • Eno2
  • Eno3
  • Eno4
  • Fbp
  • Fbp1
  • Fbp2
  • G6pc
  • G6pc1
  • G6pc3
  • G6pt
  • Gapd
  • Gapd-s
  • Gapdh
  • Gapdhs
  • Gapds
  • Gpi
  • Pc
  • Pck1
  • Pck2
  • Pgam1
  • Pgam2
  • Pgk-1
  • Pgk1
  • Pgk2
  • RGD1563601
  • Slc37a1
  • Slc37a2
  • Slc37a4
  • Tpi1
  • Tpi1l2
Rattus norvegicus (Norway rat)
Phosphorylation of the APC/C
  • Anapc1
  • Anapc15
  • Anapc16
  • Anapc2
  • Anapc4
  • Anapc5
  • Anapc7
  • Ccnb1
  • Cdc16
  • Cdc2
  • Cdc23
  • Cdc26
  • Cdc27
  • Cdc2a
  • Cdk1
  • Cdkn1
  • LOC100366017
  • Plk
  • Plk1
  • Ube2c
  • Ube2d1
  • Ube2e1
  • Ube2s
Rattus norvegicus (Norway rat)
Activation of Ca-permeable Kainate Receptor
  • CaMIII
  • Calm3
  • Cam3
  • Camc
  • Dlg1
  • Dlg3
  • Dlg4
  • Dlgh1
  • Dlgh3
  • Dlgh4
  • Glur5
  • Glur6
  • Glur7
  • Grik1
  • Grik2
  • Grik3
  • Grik4
  • Grik5
  • Ncald
  • Psd95
Rattus norvegicus (Norway rat)
SHC-related events triggered by IGF1R
  • Ash
  • Grb2
  • Igf-1
  • Igf-2
  • Igf1
  • Igf1r
  • Igf2
  • Shc1
  • Sos1
Rattus norvegicus (Norway rat)
Sodium-coupled sulphate, di- and tri-carboxylate transporters
  • Nact
  • Nadc1
  • Nadc3
  • Nas1
  • Nasi1
  • Sdct1
  • Sdct2
  • Slc13a1
  • Slc13a2
  • Slc13a3
  • Slc13a4
  • Slc13a5
Rattus norvegicus (Norway rat)
Regulation by c-FLIP
  • AABR07018323.1
  • Apt1
  • Apt1Lg1
  • Casp8
  • Cd95l
  • Cflar
  • Fadd
  • Fas
  • Fasl
  • Faslg
  • Ripk1
  • Tnfrsf10b
  • Tnfrsf6
  • Tnfsf10
  • Tnfsf6
  • Tnlg6a
  • Tradd
  • Traf2
Rattus norvegicus (Norway rat)
Nonhomologous End-Joining (NHEJ)
  • ABRAXAS1
  • Abra1
  • Atm
  • Babam1
  • Babam2
  • Bard1
  • Brca1
  • Brcc3
  • Brcc36
  • Bre
  • Ccdc98
  • Dclre1c
  • ENSRNOG00000064540
  • ENSRNOG00000066901
  • ENSRNOG00000068034
  • Fam175a
  • H2afx
  • H2ax
  • H2bc1
  • H2bc12l1
  • H2bc6
  • H2bcl1
  • H2bcl2
  • H2bu1
  • H4c16
  • H4c2
  • H4f16
  • H4ft
  • Herc2
  • Hist1h2ba
  • Hist1h2bc
  • Hist1h2bg
  • Hist1h2bo
  • Hist1h2bq
  • Hist1h4b
  • Hist1h4m
  • Hist4
  • Hist4h4
  • Htatip
  • Kat5
  • LOC100365043
  • LOC100910200
  • LOC684797
  • Lig4
  • Mdc1
  • Merit40
  • Mms2
  • Mre11
  • Mre11a
  • Nba1
  • Nbn
  • Nbs1
  • Nhej1
  • Nsd2
  • Paxip1
  • Pias4
  • Poll
  • Polm
  • Prkdc
  • Rad50
  • Rap80
  • Rif1
  • Rnf168
  • Rnf8
  • Snm1l
  • Tdp1
  • Tdp2
  • Th2b
  • Tip60
  • Tip60b
  • Tp53bp1
  • Ttrap
  • Ube2v2
  • Uev2
  • Uimc1
  • Whsc1
  • Xlf
  • Xrcc4
  • Xrcc5
  • Xrcc6
Rattus norvegicus (Norway rat)

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GlyCosmos is a member of the GlySpace Alliance together with GlyGen and Glycomics@ExPASy.

Acknowledgements

Supported by JST NBDC Grant Number JPMJND2204

Partly supported by NIH Common Fund Grant #1U01GM125267-01


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Last updated: August 19, 2024