GlyCosmos Pathways

Integrated of pathway data, containing glycoproteins and glycans obtained from Reactome and the Metabolism of carbohydrates in Escherichia coli O-antigens obtained from ECODAB. Search by pathway name, species, and protein name.

Source Last Updated
Reactome March 20, 2024
ECODAB April 1, 2019
Displaying entries 701 - 725 of 1070 in total
Pathway Name Protein Name UniProt ID Gene Symbol ▲ Organism GlyTouCan ID
Apoptosis induced DNA fragmentation
  • Cad
  • Casp3
  • Cpp32
  • Dffa
  • Dffb
  • H1-0
  • H1-1
  • H1-4
  • H1-5
  • H1f0
  • H1f2
  • H1f4
  • H1f5
  • HIf5
  • Hist1h1a
  • Hist1h1b
  • Hmg-1
  • Hmg1
  • Hmg2
  • Hmgb1
  • Hmgb1-ps33
  • Hmgb1-ps4
  • Hmgb1l1
  • Hmgb1l2
  • Hmgb1l3
  • Hmgb1l5
  • Hmgb2
  • Kpna1
  • Kpnb1
  • LOC108349189
  • LOC108350839
Rattus norvegicus (Norway rat)
Nectin/Necl trans heterodimerization
  • Cadm1
  • Cadm3
  • Igsf4b
  • Necl1
  • Nectin1
  • Nectin2
  • Nectin3
  • Nectin4
  • Pvrl1
  • Pvrl2
  • SynCam1
Rattus norvegicus (Norway rat)
Calnexin/calreticulin cycle
  • Calr
  • Canx
  • Erp60
  • Grp58
  • Pdia3
Rattus norvegicus (Norway rat)
Interferon gamma signaling
  • Camk2a
  • Camk2b
  • Camk2d
  • Camk2g
  • Cish3
  • Erk1
  • Erk2
  • Ifng
  • Ifngr1
  • Ifngr2
  • Jak1
  • Jak2
  • Mapk
  • Mapk1
  • Mapk3
  • Pkcd
  • Prkcd
  • Prkm1
  • Prkm3
  • Ptph6
  • Ptpn6
  • Socs1
  • Socs3
  • Stat1
  • Stat4
  • Yb1
  • Ybx1
Rattus norvegicus (Norway rat)
Signal transduction by L1
  • Caml1
  • Ck2n
  • Csnk2a1
  • Csnk2a2
  • Csnk2b
  • Egfr
  • Erk1
  • Erk2
  • Fgfr1
  • Flg
  • Itga2b
  • Itga5
  • Itga9
  • Itgav
  • Itgb1
  • Itgb3
  • L1cam
  • Map2k1
  • Map2k2
  • Mapk
  • Mapk1
  • Mapk3
  • Mek1
  • Mek2
  • Mkk2
  • Ncam
  • Ncam1
  • Nrp1
  • Pak1
  • Prkm1
  • Prkm3
  • Prkmk1
  • Prkmk2
  • Rac
  • Rac1
  • Vav2
Rattus norvegicus (Norway rat)
L1CAM interactions
  • Caml1
  • Gap43
  • L1cam
  • Lypla2
  • Ranbp9
Rattus norvegicus (Norway rat)
Interleukin-27 signaling
  • Canx
  • Crlf1
  • Ebi3
  • Il27
  • Il6st
  • Jak1
  • Jak2
  • Stat1
  • Stat3
  • Stat4
  • Tyk2
Rattus norvegicus (Norway rat)
Interleukin-35 Signalling
  • Canx
  • Ebi3
  • Il12a
  • Il12rb2
  • Il6st
  • Jak1
  • Jak2
  • Stat1
  • Stat3
  • Stat4
  • Tyk2
Rattus norvegicus (Norway rat)
Regulation of lipid metabolism by PPARalpha
  • Carm1
  • Cbp
  • Chd9
  • Crebbp
  • Fabp1
  • Hdac3
  • Med1
  • Ncoa1
  • Ncoa2
  • Ncoa6ip
  • Ncor2
  • Nr1c1
  • Nr2b1
  • Pimt
  • Ppar
  • Ppara
  • Prmt4
  • Rxra
  • Sin3a
  • Sin3b
  • Smarcd3
  • Tbl1x
  • Tbl1xr1
  • Tgs1
  • Tif2
Rattus norvegicus (Norway rat)
Interleukin-1 processing
  • Casp1
  • Ctsg
  • Gsdmd
  • Igif
  • Il18
  • Il1a
  • Il1b
  • Il1bc
  • Il1bce
  • Nfkb2
  • Rela
Rattus norvegicus (Norway rat)
Apoptotic cleavage of cell adhesion proteins
  • Casp3
  • Catnb
  • Cdh1
  • Cpp32
  • Ctnnb1
  • Dsg1
  • Dsg2
  • Dsg3
  • Dsp
  • Ocln
  • Pkp1
  • Tjp1
  • Tjp2
Rattus norvegicus (Norway rat)
Other interleukin signaling
  • Casp3
  • Cd4
  • Cpp32
  • Csf1
  • Csf1r
  • Csfm
  • Csfmr
  • Fms
  • IL16
  • Il16
  • Il34
  • Ptprz
  • Ptprz1
  • Ptpz
  • Sap
  • Sdc1
  • Snap
  • Snap25
  • Stx1a
  • Stx3
  • Stx3a
  • Stx4
  • Stx4a
  • Stxbp2
  • Syb2
  • Synd1
  • Txlna
  • Unc18b
  • Vamp2
Rattus norvegicus (Norway rat)
Breakdown of the nuclear lamina
  • Casp6
  • Lmn1
  • Lmna
  • Lmnb1
  • Mch2
Rattus norvegicus (Norway rat)
TRIF-mediated programmed cell death
  • Casp8
  • Cd14
  • Fadd
  • Ly96
  • Plin3
  • Rip3
  • Ripk1
  • Ripk3
  • Ticam1
  • Ticam2
  • Tlr4
Rattus norvegicus (Norway rat)
Ligand-dependent caspase activation
  • Casp8
  • Cd14
  • Fadd
  • Ly96
  • Plin3
  • Ripk1
  • Ticam1
  • Ticam2
  • Tlr4
Rattus norvegicus (Norway rat)
Class C/3 (Metabotropic glutamate/pheromone receptors)
  • Casr
  • Gabbr1
  • Gabbr2
  • Gpr51
  • Gpr70
  • Gpr71
  • Gprc1a
  • Gprc1b
  • Gprc1c
  • Gprc1d
  • Gprc1e
  • Gprc1f
  • Gprc1g
  • Gprc1h
  • Gprc2a
  • Gprc6a
  • Grm1
  • Grm2
  • Grm3
  • Grm4
  • Grm5
  • Grm6
  • Grm7
  • Grm8
  • Mglur1
  • Mglur2
  • Mglur3
  • Mglur4
  • Mglur5
  • Mglur6
  • Mglur7
  • Mglur8
  • Pcar1
  • T1r1
  • T1r2
  • T1r3
  • T2r16
  • T2r17
  • T2r18
  • T2r20
  • T2r38
  • Tas1r1
  • Tas1r2
  • Tas1r3
  • Tas2r1
  • Tas2r106
  • Tas2r108
  • Tas2r118
  • Tas2r119
  • Tas2r12
  • Tas2r120
  • Tas2r121
  • Tas2r126
  • Tas2r13
  • Tas2r130
  • Tas2r135
  • Tas2r136
  • Tas2r137
  • Tas2r138
  • Tas2r139
  • Tas2r140
  • Tas2r144
  • Tas2r145
  • Tas2r16
  • Tas2r18
  • Tas2r19
  • Tas2r26
  • Tas2r28
  • Tas2r3
  • Tas2r31
  • Tas2r32
  • Tas2r38
  • Tas2r39
  • Tas2r4
  • Tas2r40
  • Tas2r41
  • Tas2r6
  • Tas2r7
  • Tr1
  • Tr2
  • Tr3
Rattus norvegicus (Norway rat)
LRR FLII-interacting protein 1 (LRRFIP1) activates type I IFN production
  • Catnb
  • Cbp
  • Crebbp
  • Ctnnb1
  • Ep300
  • Irf3
Rattus norvegicus (Norway rat)
RUNX3 regulates WNT signaling
  • Catnb
  • Ctnnb1
  • Lef1
  • Runx3
  • Tcf7
  • Tcf7l1
  • Tcf7l2
Rattus norvegicus (Norway rat)
Sperm Motility And Taxes
  • Catsper1
  • Catsper2
  • Catsper3
  • Catsper4
  • Catsperb
  • Catsperd
  • Catsperg
  • Catsperg1
  • Hvcn1
  • Kcnu1
  • Tmem146
Rattus norvegicus (Norway rat)
NOSTRIN mediated eNOS trafficking
  • Cav
  • Cav1
  • Dnm2
  • Dyn2
  • Nos3
  • Nostrin
Rattus norvegicus (Norway rat)
Mitochondrial calcium ion transport
  • Cbara1
  • Efha1
  • Mcu
  • Mcub
  • Micu1
  • Micu2
  • Micu3
  • Nckx6
  • Nclx
  • Slc24a6
  • Slc8b1
  • Smdt1
  • Smhs2
Rattus norvegicus (Norway rat)
RUNX3 regulates p14-ARF
  • Cbfb
  • Ccnd1
  • Ep300
  • Hdac4
  • Runx3
  • Tgfb1
Rattus norvegicus (Norway rat)
Regulation of RUNX3 expression and activity
  • Cbfb
  • Ep300
  • LOC100360645
  • LOC100360846
  • LOC100365869
  • Lmp10
  • Lmp2
  • Mdm2
  • Mecl1
  • Mss1
  • Psma1
  • Psma2
  • Psma3
  • Psma4
  • Psma5
  • Psma6
  • Psma7
  • Psmb1
  • Psmb10
  • Psmb2
  • Psmb3
  • Psmb4
  • Psmb5
  • Psmb6
  • Psmb6l
  • Psmb6l1
  • Psmb7
  • Psmb8
  • Psmb9
  • Psmc1
  • Psmc2
  • Psmc3
  • Psmc4
  • Psmc5
  • Psmc6
  • Psmd1
  • Psmd10
  • Psmd11
  • Psmd12
  • Psmd13
  • Psmd14
  • Psmd2
  • Psmd3
  • Psmd5
  • Psmd6
  • Psmd7
  • Psmd8
  • Psmd9
  • Psme1
  • Psme2
  • Psmf1
  • Ring12
  • Rps27a
  • Runx3
  • Smurf1
  • Smurf2
  • Src
  • Sug1
  • Tbp1
  • Tbp7
  • Tgfb1
  • Uba80
  • Ubb
  • Ubbl1
  • Ubc
  • Ubcep1
  • Ubcl1
Rattus norvegicus (Norway rat)
Glucocorticoid biosynthesis
  • Cbg
  • Cyp11b-1
  • Cyp11b-2
  • Cyp11b-3
  • Cyp11b1
  • Cyp11b2
  • Cyp11b3
  • Cyp17
  • Cyp17a1
  • Cyp21
  • Cyp21a1
  • Hsd11
  • Hsd11b1
  • Hsd11b2
  • Hsd11k
  • Hsd3b
  • Hsd3b1
  • Hsd3b5
  • Hsd3b5-ps1
  • Hsd3b6
  • Pomc
  • Pomc2
  • Serpina6
Rattus norvegicus (Norway rat)
Interleukin-6 signaling
  • Cbl
  • Cish3
  • Il-6
  • Il6
  • Il6r
  • Il6ra
  • Il6st
  • Jak1
  • Jak2
  • Ptpn11
  • Socs3
  • Stat1
  • Stat3
  • Stat4
  • Tyk2
Rattus norvegicus (Norway rat)

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GlyCosmos is a member of the GlySpace Alliance together with GlyGen and Glycomics@ExPASy.

Acknowledgements

Supported by JST NBDC Grant Number JPMJND2204

Partly supported by NIH Common Fund Grant #1U01GM125267-01


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Last updated: August 19, 2024