GlyCosmos Pathways

Integrated of pathway data, containing glycoproteins and glycans obtained from Reactome and the Metabolism of carbohydrates in Escherichia coli O-antigens obtained from ECODAB. Search by pathway name, species, and protein name.

Source Last Updated
Reactome March 20, 2024
ECODAB April 1, 2019
Displaying entries 176 - 200 of 1070 in total
Pathway Name ▲ Protein Name UniProt ID Gene Symbol Organism GlyTouCan ID
Choline catabolism
  • Ald7a1
  • Aldh7a1
  • Bhmt
  • Cd92
  • Cdw92
  • Chdh
  • Ctl1
  • Dmgdh
  • Sardh
  • Slc44a1
Rattus norvegicus (Norway rat)
Chondroitin sulfate biosynthesis
  • Bcan
  • Behab
  • Bgn
  • Caleb
  • Chpf
  • Chpf2
  • Chst11
  • Chst12
  • Chst13
  • Chst15
  • Chst3
  • Chst7
  • Chst9
  • Chsy1
  • Chsy3
  • Csgalnact1
  • Csgalnact2
  • Cspg2
  • Cspg3
  • Cspg4
  • Cspg5
  • Dcn
  • Galnac4s6st
  • Ncan
  • Ng2
  • Ngc
  • Vcan
Rattus norvegicus (Norway rat)
Chromatin modifying enzymes
  • Baf190a
  • Brg1
  • Brwd1
  • H3c13
  • Hist2h3c2
  • Pad1
  • Pad2
  • Pad3
  • Pad4
  • Padi1
  • Padi2
  • Padi3
  • Padi4
  • Padi6
  • Pdi
  • Pdi1
  • Pdi2
  • Pdi3
  • Pdi4
  • Smarca4
  • Snf2b
  • Snf2l4
Rattus norvegicus (Norway rat)
Chylomicron assembly
  • Apoa1
  • Apoa2
  • Apoa4
  • Apob
  • Apoc2
  • Apoc3
  • Apoe
  • Mtp
  • Mttp
  • P4hb
  • Pdia1
  • Sar1b
Rattus norvegicus (Norway rat)
Chylomicron clearance
  • Apob
  • Apoe
  • Arh
  • Ldlr
  • Ldlrap1
  • Lipc
Rattus norvegicus (Norway rat)
Chylomicron remodeling
  • Apoa1
  • Apoa2
  • Apoa4
  • Apoa5
  • Apob
  • Apoc2
  • Apoc3
  • Apoe
  • Gpihbp1
  • Lpl
  • Rap3
Rattus norvegicus (Norway rat)
Cilium Assembly
  • Atat1
  • Mec17
Rattus norvegicus (Norway rat)
Ciprofloxacin ADME
  • Abcg2
  • Alb
  • Bcrp1
  • Oatp1a4
  • Oatp2
  • Oct1
  • Slc21a5
  • Slc22a1
  • Slco1a4
Rattus norvegicus (Norway rat)
Citric acid cycle (TCA cycle)
  • Aco2
  • Cs
  • Fh
  • Fh1
  • Hsp75
  • Hspc5
  • Idh2
  • Idh3B
  • Idh3a
  • Idh3g
  • Mdh2
  • Mor1
  • Nnt
  • SUCLA2
  • SUCLG2
  • Sdh1
  • Sdha
  • Sdhb
  • Sdhc
  • Sdhd
  • Sucla2
  • Suclg1
  • Suclg2
  • Trap1
Rattus norvegicus (Norway rat)
Class A/1 (Rhodopsin-like receptors)
  • Cmklr1
  • Cnr1
  • Cnr2
  • Dez
  • Ebi2
  • Gpbar1
  • Gpr109
  • Gpr109a
  • Gpr109b
  • Gpr132
  • Gpr18
  • Gpr183
  • Gpr35
  • Gpr39
  • Gpr4
  • Gpr55
  • Gpr65
  • Gpr68
  • Gpr80
  • Gpr91
  • Hcar2
  • Mt2
  • Mtnr1b
  • Niacr1
  • Oxgr1
  • P2y15
  • Ptafr
  • Pumag
  • Skr6
  • Sucnr1
  • Tgr5
Rattus norvegicus (Norway rat)
Class B/2 (Secretin family receptors)
  • Adgre1
  • Adgre5
  • Cd55
  • Crf2r
  • Crh
  • Crhbp
  • Crhr
  • Crhr1
  • Crhr2
  • Emr1
  • Pth
  • Pth1r
  • Pth2
  • Pth2r
  • Pthlh
  • Pthr
  • Pthr1
  • Pthr2
  • Pthrp
  • Tip39
  • Tipf39
  • Ucn
  • Ucn2
  • Ucn3
Rattus norvegicus (Norway rat)
Class C/3 (Metabotropic glutamate/pheromone receptors)
  • Casr
  • Gabbr1
  • Gabbr2
  • Gpr51
  • Gpr70
  • Gpr71
  • Gprc1a
  • Gprc1b
  • Gprc1c
  • Gprc1d
  • Gprc1e
  • Gprc1f
  • Gprc1g
  • Gprc1h
  • Gprc2a
  • Gprc6a
  • Grm1
  • Grm2
  • Grm3
  • Grm4
  • Grm5
  • Grm6
  • Grm7
  • Grm8
  • Mglur1
  • Mglur2
  • Mglur3
  • Mglur4
  • Mglur5
  • Mglur6
  • Mglur7
  • Mglur8
  • Pcar1
  • T1r1
  • T1r2
  • T1r3
  • T2r16
  • T2r17
  • T2r18
  • T2r20
  • T2r38
  • Tas1r1
  • Tas1r2
  • Tas1r3
  • Tas2r1
  • Tas2r106
  • Tas2r108
  • Tas2r118
  • Tas2r119
  • Tas2r12
  • Tas2r120
  • Tas2r121
  • Tas2r126
  • Tas2r13
  • Tas2r130
  • Tas2r135
  • Tas2r136
  • Tas2r137
  • Tas2r138
  • Tas2r139
  • Tas2r140
  • Tas2r144
  • Tas2r145
  • Tas2r16
  • Tas2r18
  • Tas2r19
  • Tas2r26
  • Tas2r28
  • Tas2r3
  • Tas2r31
  • Tas2r32
  • Tas2r38
  • Tas2r39
  • Tas2r4
  • Tas2r40
  • Tas2r41
  • Tas2r6
  • Tas2r7
  • Tr1
  • Tr2
  • Tr3
Rattus norvegicus (Norway rat)
Class I peroxisomal membrane protein import
  • Abcd1
  • Abcd2
  • Abcd3
  • Acbd5
  • Aldh3a2
  • Aldh4
  • Aldr
  • Aldrp
  • Atad1
  • Fis1
  • Gdap1
  • Npg6
  • Paf1
  • Paf3
  • Pex11b
  • Pex12
  • Pex14
  • Pex16
  • Pex19
  • Pex2
  • Pex3
  • Pmp22
  • Pmp24
  • Pmp35
  • Pmp70
  • Pxf
  • Pxmp1
  • Pxmp2
  • Pxmp3
  • Pxmp4
  • Ttc11
Rattus norvegicus (Norway rat)
Classical antibody-mediated complement activation
  • AABR07034730.2
  • AABR07060971.1
  • AABR07061001.1
  • AABR07065782.1
  • AABR07065808.1
  • AABR07065812.2
  • AABR07065813.1
  • C1qa
  • C1qb
  • C1qc
  • C1qg
  • C1r
  • C1s
  • Crp
  • ENSRNOG00000062324
  • ENSRNOG00000062682
  • ENSRNOG00000062762
  • ENSRNOG00000062853
  • ENSRNOG00000062915
  • ENSRNOG00000062976
  • ENSRNOG00000063148
  • ENSRNOG00000063329
  • ENSRNOG00000063340
  • ENSRNOG00000063341
  • ENSRNOG00000063422
  • ENSRNOG00000063550
  • ENSRNOG00000063572
  • ENSRNOG00000063707
  • ENSRNOG00000063791
  • ENSRNOG00000064041
  • ENSRNOG00000064061
  • ENSRNOG00000064085
  • ENSRNOG00000064245
  • ENSRNOG00000064481
  • ENSRNOG00000064582
  • ENSRNOG00000065160
  • ENSRNOG00000065181
  • ENSRNOG00000065191
  • ENSRNOG00000065237
  • ENSRNOG00000065406
  • ENSRNOG00000065564
  • ENSRNOG00000065629
  • ENSRNOG00000065670
  • ENSRNOG00000065675
  • ENSRNOG00000065690
  • ENSRNOG00000065855
  • ENSRNOG00000066010
  • ENSRNOG00000066072
  • ENSRNOG00000066203
  • ENSRNOG00000066380
  • ENSRNOG00000066406
  • ENSRNOG00000066431
  • ENSRNOG00000066785
  • ENSRNOG00000066812
  • ENSRNOG00000066814
  • ENSRNOG00000066904
  • ENSRNOG00000066922
  • ENSRNOG00000066926
  • ENSRNOG00000066971
  • ENSRNOG00000067010
  • ENSRNOG00000067025
  • ENSRNOG00000067233
  • ENSRNOG00000067273
  • ENSRNOG00000067516
  • ENSRNOG00000067603
  • ENSRNOG00000067643
  • ENSRNOG00000067679
  • ENSRNOG00000067883
  • ENSRNOG00000068055
  • ENSRNOG00000068059
  • ENSRNOG00000068381
  • ENSRNOG00000068499
  • ENSRNOG00000068847
  • ENSRNOG00000069193
  • ENSRNOG00000069427
  • ENSRNOG00000069491
  • ENSRNOG00000069766
  • ENSRNOG00000069828
  • ENSRNOG00000069901
  • ENSRNOG00000069940
  • ENSRNOG00000070091
  • ENSRNOG00000070192
  • ENSRNOG00000070244
  • ENSRNOG00000070247
  • ENSRNOG00000070810
  • ENSRNOG00000070812
  • ENSRNOG00000070816
  • ENSRNOG00000070832
  • ENSRNOG00000070933
  • ENSRNOG00000071049
  • ENSRNOG00000071091
  • Igkv2-112l1
  • Igkv8-30l1
  • Igkvl-ps6
  • Igkvl10
  • Igkvl12
  • Igkvl13
  • Igkvl2
  • Iglc1
  • Igll1
  • LOC100363522
  • LOC100365500
  • LOC100911032
  • LOC102551948
  • LOC690813
  • Ptx1
  • RGD1561722
  • RGD1564696
  • r-gsp
Rattus norvegicus (Norway rat)
Clathrin-mediated endocytosis
  • Aak1
  • Abcc7
  • Actr2
  • Actr3
  • Adrb2
  • Adrb2r
  • Adtab
  • Agfg1
  • Agfg1-ps1
  • Agtr1
  • Agtr1a
  • Amph
  • Amph1
  • Amph2
  • Amphl
  • Ap17
  • Ap2a1
  • Ap2a2
  • Ap2b1
  • Ap2m1
  • Ap2s1
  • Apob
  • Areg
  • Arf1gap
  • Arf6
  • Arfgap1
  • Arh
  • Arp2
  • Arp3
  • Arpc1a
  • Arpc2
  • Arpc3
  • Arpc4
  • Arpc5
  • Arrb1
  • Arrb2
  • Ash
  • At1a
  • Avp
  • Avpr2
  • Bin1
  • Btc
  • Calm
  • Cbl
  • Cd36l2
  • Cd3d
  • Cd3g
  • Cd4
  • Cftr
  • Chrm-2
  • Chrm2
  • Cip4
  • Clapb1
  • Claps2
  • Clta
  • Cltb
  • Cltc
  • Dab2
  • Dnajc6
  • Dnm
  • Dnm1
  • Dnm2
  • Dnm3
  • Doc2
  • Dtr
  • Dvl2
  • Dyn2
  • Dyn3
  • Egf
  • Egfr
  • Ehsh1
  • Epn1
  • Epn2
  • Eps15
  • Eps15l1
  • Ereg
  • Fbp17
  • Fcho1
  • Fcho2
  • Fnbp1
  • Fnbp1l
  • Fzd4
  • Gak
  • Gapvd1
  • Glut8
  • Glutx1
  • Grb2
  • Hbegf
  • Hegfl
  • Hgs
  • Hip1
  • Hip1r
  • Hrb
  • Hrs
  • Hrs2
  • Hsc70
  • Hsc73
  • Hspa8
  • Igf2r
  • Il7r
  • Itsn
  • Itsn1
  • Itsn2
  • LOC100360645
  • LOC100361515
  • Ldlr
  • Ldlrap1
  • Limpii
  • Lrp2
  • M6pr
  • Necap1
  • Necap2
  • Ocrl
  • Pacsin1
  • Pacsin2
  • Pacsin3
  • Picalm
  • Pik3c2a
  • Pip5k1c
  • Rab5a
  • Rab5b
  • Rab5c
  • Reps1
  • Reps2
  • Rip
  • Rps27a
  • Ruk
  • Scarb2
  • Sdgf
  • Seta
  • Sh3d2a
  • Sh3d2c1
  • Sh3gl1
  • Sh3gl2
  • Sh3gl3
  • Sh3kbp1
  • Sh3p13
  • Sh3p4
  • Sh3p8
  • Slc18a3
  • Slc2a8
  • Snap91
  • Snx18
  • Snx9
  • Stam
  • Stam2
  • Ston1
  • Ston2
  • Stp
  • Syb2
  • Syb3
  • Sybl1
  • Synj1
  • Synj2
  • Syt1
  • Syt11
  • Syt2
  • Syt5
  • Syt8
  • Syt9
  • T3d
  • Tac1r
  • Tacr1
  • Tf
  • Tfrc
  • Tgfa
  • Toca1
  • Trfr
  • Trip10
  • Ttgn1
  • Uba80
  • Ubb
  • Ubbl1
  • Ubc
  • Ubcep1
  • Ubcl1
  • Vacht
  • Vamp2
  • Vamp3
  • Vamp4
  • Vamp7
  • Vamp8
  • Vat
  • Wnt-5a
  • Wnt5a
Rattus norvegicus (Norway rat)
Clearance of dopamine
  • Maoa
  • Slc6a3
Rattus norvegicus (Norway rat)
Clearance of seratonin
  • Slc6a4
Rattus norvegicus (Norway rat)
Cleavage of the damaged purine
  • Acd
  • ENSRNOG00000062927
  • ENSRNOG00000064540
  • ENSRNOG00000066901
  • ENSRNOG00000068034
  • H2ab3
  • H2ac10
  • H2ac18
  • H2ac4
  • H2afb3
  • H2afx
  • H2aj
  • H2ax
  • H2az2
  • H2bc1
  • H2bc12l1
  • H2bc6
  • H2bcl1
  • H2bcl2
  • H2bu1
  • H4c16
  • H4c2
  • H4f16
  • H4ft
  • Hist1h2ba
  • Hist1h2bc
  • Hist1h2bg
  • Hist1h2bo
  • Hist1h2bq
  • Hist1h4b
  • Hist1h4m
  • Hist2h2aa3
  • Hist4
  • Hist4h4
  • LOC100365043
  • LOC100910200
  • LOC120097726
  • LOC684797
  • Mmh
  • Mpg
  • Mutyh
  • Myh
  • Neil3
  • Ogg1
  • Ogh1
  • Pot1
  • Rap1
  • Terf2
  • Terf2ip
  • Th2b
Rattus norvegicus (Norway rat)
Collagen biosynthesis and modifying enzymes
  • Adamts14
  • Adamts2
  • Adamts3
  • Bmp1
  • Cbp1
  • Col10a1
  • Col11a1
  • Col11a2
  • Col13a1
  • Col14a1
  • Col15a1
  • Col16a1
  • Col17a1
  • Col18a1
  • Col19a1
  • Col1a1
  • Col1a2
  • Col20a1
  • Col22a1
  • Col23a1
  • Col25a1
  • Col26a1
  • Col28a1
  • Col2a1
  • Col3a1
  • Col4a1
  • Col4a2
  • Col4a3
  • Col4a4
  • Col4a5
  • Col4a6
  • Col5a1
  • Col5a2
  • Col5a3
  • Col6a2
  • Col6a3
  • Col6a5
  • Col6a6
  • Col7a1
  • Col8a1
  • Col8a2
  • Col9a2
  • Col9a3
  • Colgalt2
  • Glt25d2
  • Gpr162
  • Hsp47
  • LOC100909752
  • LOC100911572
  • LOC687064
  • Leprel1
  • P3h2
  • P3h3
  • P4ha
  • P4ha1
  • P4ha2
  • P4ha3
  • P4hb
  • PCOLCE2
  • Pcolce
  • Pcpe1
  • Pdia1
  • Plod
  • Plod1
  • Plod2
  • Plod3
  • RGD1564680
  • Serpinh1
  • Tll1
  • Tll2
Rattus norvegicus (Norway rat)
Collagen chain trimerization
  • Col10a1
  • Col11a1
  • Col11a2
  • Col13a1
  • Col14a1
  • Col15a1
  • Col16a1
  • Col17a1
  • Col18a1
  • Col19a1
  • Col1a1
  • Col1a2
  • Col20a1
  • Col22a1
  • Col23a1
  • Col25a1
  • Col26a1
  • Col28a1
  • Col2a1
  • Col3a1
  • Col4a1
  • Col4a2
  • Col4a3
  • Col4a4
  • Col4a5
  • Col4a6
  • Col5a1
  • Col5a2
  • Col5a3
  • Col7a1
  • Col8a1
  • Col8a2
  • LOC100909752
  • LOC100911572
  • LOC687064
  • RGD1564680
Rattus norvegicus (Norway rat)
Collagen degradation
  • Col13a1
  • Col15a1
  • Col18a1
  • Col19a1
  • Col25a1
  • Col26a1
  • Cts7l2
  • Ctsb
  • Ctsd
  • Ctsk
  • Ctsll3
  • Fur
  • Furin
  • LOC100365995
  • LOC100909752
  • LOC103690164
  • LOC687064
  • Mmel
  • Mmp-7
  • Mmp1
  • Mmp10
  • Mmp12
  • Mmp13
  • Mmp14
  • Mmp15
  • Mmp1a
  • Mmp2
  • Mmp20
  • Mmp3
  • Mmp7
  • Mmp8
  • Mmp9
  • Mtmmp
  • Pcsk3
  • Phykpl
  • Prss3
  • RGD1308751
  • Tmprss6
  • Try4
  • Try5
Rattus norvegicus (Norway rat)
Common Pathway of Fibrin Clot Formation
  • Cd177
  • Cxcl4
  • F10
  • F13a
  • F13a1
  • F13b
  • F2
  • F2r
  • F8
  • Fga
  • Fgb
  • Fgg
  • Hcf2
  • Par1
  • Pf4
  • Pi7
  • Pn1
  • Proc
  • Procr
  • Pros
  • Pros1
  • Prtn3
  • Scyb4
  • Serpina5
  • Serpinc1
  • Serpind1
  • Serpine2
  • Thbd
Rattus norvegicus (Norway rat)
Complex I biogenesis
  • AABR07056686.1
  • Acad9
  • Ecsit
  • Hrpap20
  • Ip13
  • LOC100363268
  • LOC100911483
  • LOC103691107
  • LOC120101567
  • LOC684509
  • Mt-nd1
  • Mt-nd2
  • Mt-nd3
  • Mt-nd4
  • Mt-nd5
  • Mt-nd6
  • Mtnd1
  • Mtnd4
  • Mtnd5
  • Mtnd6
  • Nd1
  • Nd2
  • Nd3
  • Nd4
  • Nd5
  • Nd6
  • Ndufa10
  • Ndufa11
  • Ndufa12
  • Ndufa13
  • Ndufa2
  • Ndufa3-ps3
  • Ndufa5
  • Ndufa6
  • Ndufa8
  • Ndufa9
  • Ndufab1
  • Ndufaf1
  • Ndufaf2
  • Ndufaf3
  • Ndufaf4
  • Ndufaf5
  • Ndufaf6
  • Ndufaf7
  • Ndufb10
  • Ndufb11
  • Ndufb2
  • Ndufb3
  • Ndufb4l5
  • Ndufb5
  • Ndufb6
  • Ndufb7
  • Ndufb8
  • Ndufc1
  • Ndufs1
  • Ndufs2
  • Ndufs3
  • Ndufs4
  • Ndufs5
  • Ndufs5-ps2
  • Ndufs6
  • Ndufs7
  • Ndufs8
  • Ndufv1
  • Ndufv2
  • Ndufv3
  • Nubpl
  • Timmdc1
  • Tmem126b
  • Tmem186
Rattus norvegicus (Norway rat)
Condensation of Prometaphase Chromosomes
  • Ck2n
  • Csnk2a1
  • Csnk2a2
  • Csnk2b
  • Ncapd2
  • Ncapg
  • Ncaph
  • Smc2
  • Smc4
Rattus norvegicus (Norway rat)
Condensation of Prophase Chromosomes
  • Ccnb1
  • Cdc2
  • Cdc2a
  • Cdk1
  • Cdkn1
  • ENSRNOG00000062927
  • ENSRNOG00000064540
  • ENSRNOG00000066901
  • ENSRNOG00000068034
  • H2ab3
  • H2ac10
  • H2ac18
  • H2ac4
  • H2afb3
  • H2afx
  • H2aj
  • H2ax
  • H2az2
  • H2bc1
  • H2bc12l1
  • H2bc6
  • H2bcl1
  • H2bcl2
  • H2bu1
  • H4c16
  • H4c2
  • H4f16
  • H4ft
  • Hist1h2ba
  • Hist1h2bc
  • Hist1h2bg
  • Hist1h2bo
  • Hist1h2bq
  • Hist1h4b
  • Hist1h4m
  • Hist2h2aa3
  • Hist4
  • Hist4h4
  • Kmt5a
  • LOC100365043
  • LOC100910200
  • LOC120097726
  • LOC684797
  • Mcph1
  • Ncapd3
  • Ncapg2
  • Ncaph2
  • Phf8
  • Plk
  • Plk1
  • Rb-1
  • Rb1
  • Set
  • Smc2
  • Smc4
  • Th2b
Rattus norvegicus (Norway rat)

About Release Notes Help Feedback

International Collaboration

GlyCosmos is a member of the GlySpace Alliance together with GlyGen and Glycomics@ExPASy.

Acknowledgements

Supported by JST NBDC Grant Number JPMJND2204

Partly supported by NIH Common Fund Grant #1U01GM125267-01


Logo License Policies Site Map

Contact: support@glycosmos.org

This work is licensed under Creative Commons Attribution 4.0 International


GlyCosmos Portal v4.0.0

Last updated: August 19, 2024