GlyCosmos Pathways

Integrated of pathway data, containing glycoproteins and glycans obtained from Reactome and the Metabolism of carbohydrates in Escherichia coli O-antigens obtained from ECODAB. Search by pathway name, species, and protein name.

Source Last Updated
Reactome March 20, 2024
ECODAB April 1, 2019
Displaying entries 1276 - 1300 of 2090 in total
Pathway Name Protein Name ▲ UniProt ID Gene Symbol Organism GlyTouCan ID
Activation of C3 and C5
  • BF
  • BFD
  • C2
  • C3
  • C4A
  • C4B
  • C4B_2
  • C5
  • CFB
  • CO4
  • CPAMD1
  • CPAMD2
  • CPAMD3
  • CPAMD4
Homo sapiens (human)
Alternative complement activation
  • BF
  • BFD
  • C3
  • CFB
  • CFD
  • CPAMD1
  • DF
  • GZMM
  • MET1
  • PFD
Homo sapiens (human)
Defective Intrinsic Pathway for Apoptosis Due to p14ARF Loss of Function
  • C1QBP
  • CDKN2
  • CDKN2A
  • GC1QBP
  • HABP1
  • MLM
  • SF2P32
Homo sapiens (human)
Apoptotic factor-mediated response
  • C1QBP
  • CDKN2
  • CDKN2A
  • GC1QBP
  • HABP1
  • MLM
  • SF2P32
Homo sapiens (human)
RUNX1 and FOXP3 control the development of regulatory T lymphocytes (Tregs)
  • AITR
  • AML1
  • C3BR
  • CBFA2
  • CBFB
  • CD152
  • CR1
  • CTLA4
  • FOXP3
  • GITR
  • IFNG
  • IL2
  • IL2RA
  • IPEX
  • NFAT1
  • NFATC2
  • NFATP
  • RUNX1
  • TNFRSF18
Homo sapiens (human)
GABA synthesis, release, reuptake and degradation
  • CLN4
  • CPLX1
  • DNAJC5
  • GAD
  • GAD1
  • GAD2
  • GAD65
  • GAD67
  • HSC70
  • HSP73
  • HSPA10
  • HSPA8
  • KIAA0340
  • RAB3A
  • RAB3IP2
  • RIM1
  • RIMS1
  • SLC32A1
  • SNAP
  • SNAP25
  • STX1
  • STX1A
  • SVP65
  • SYB2
  • SYT
  • SYT1
  • VAMP2
  • VGAT
  • VIAAT
Homo sapiens (human)
Glutamate Neurotransmitter Release Cycle
  • ARL6IP5
  • ATA2
  • BNPI
  • BZRAP1
  • CPLX1
  • DERP11
  • EAAC1
  • EAAT1
  • EAAT2
  • EAAT3
  • EAAT4
  • EAAT5
  • GA
  • GLAST
  • GLAST1
  • GLS
  • GLS1
  • GLS2
  • GLT1
  • HEAAC1
  • JWA
  • KIAA0340
  • KIAA0612
  • KIAA0654
  • KIAA0838
  • KIAA0897
  • KIAA1382
  • LIP1
  • PPFIA1
  • PPFIA2
  • PPFIA3
  • PPFIA4
  • PRA2
  • PRAF3
  • RAB3A
  • RAB3IP2
  • RBP1
  • RIM1
  • RIMBP1
  • RIMS1
  • SAT2
  • SLC17A7
  • SLC1A1
  • SLC1A2
  • SLC1A3
  • SLC1A6
  • SLC1A7
  • SLC38A2
  • SNAP
  • SNAP25
  • SNAT2
  • STX1
  • STX1A
  • SVP65
  • SYB2
  • SYT
  • SYT1
  • TSPOAP1
  • UNC13
  • UNC13B
  • VAMP2
  • VGLUT1
Homo sapiens (human)
Serotonin Neurotransmitter Release Cycle
  • BZRAP1
  • CPLX1
  • KIAA0340
  • KIAA0612
  • KIAA0654
  • KIAA0897
  • LIP1
  • PPFIA1
  • PPFIA2
  • PPFIA3
  • PPFIA4
  • RAB3A
  • RAB3IP2
  • RBP1
  • RIM1
  • RIMBP1
  • RIMS1
  • SLC18A2
  • SNAP
  • SNAP25
  • STX1
  • STX1A
  • SVMT
  • SVP65
  • SYB2
  • SYN1
  • SYN2
  • SYN3
  • SYT
  • SYT1
  • TSPOAP1
  • UNC13
  • UNC13B
  • VAMP2
  • VMAT2
Homo sapiens (human)
Condensation of Prophase Chromosomes
  • CAPC
  • CAPD3
  • CAPE
  • CAPH2
  • CCNB
  • CCNB1
  • CDC2
  • CDC28A
  • CDK1
  • CDKN1
  • H2AB1
  • H2AC14
  • H2AC18
  • H2AC19
  • H2AC20
  • H2AC4
  • H2AC6
  • H2AC7
  • H2AC8
  • H2AFA
  • H2AFB1
  • H2AFE
  • H2AFG
  • H2AFJ
  • H2AFL
  • H2AFM
  • H2AFO
  • H2AFQ
  • H2AFV
  • H2AFX
  • H2AJ
  • H2AV
  • H2AX
  • H2AZ2
  • H2BC1
  • H2BC10
  • H2BC11
  • H2BC12
  • H2BC12L
  • H2BC13
  • H2BC14
  • H2BC15
  • H2BC17
  • H2BC21
  • H2BC26
  • H2BC3
  • H2BC4
  • H2BC5
  • H2BC6
  • H2BC7
  • H2BC8
  • H2BC9
  • H2BFA
  • H2BFB
  • H2BFC
  • H2BFD
  • H2BFE
  • H2BFF
  • H2BFG
  • H2BFH
  • H2BFJ
  • H2BFK
  • H2BFL
  • H2BFN
  • H2BFQ
  • H2BFR
  • H2BFS
  • H2BFT
  • H2BS1
  • H2BU1
  • H3-3A
  • H3-3B
  • H3-4
  • H3.3A
  • H3.3B
  • H3C1
  • H3C10
  • H3C11
  • H3C12
  • H3C13
  • H3C14
  • H3C15
  • H3C2
  • H3C3
  • H3C4
  • H3C6
  • H3C7
  • H3C8
  • H3F2
  • H3F3
  • H3F3A
  • H3F3B
  • H3FA
  • H3FB
  • H3FC HIST1H3C
  • H3FD
  • H3FF
  • H3FH
  • H3FI
  • H3FJ
  • H3FK
  • H3FL
  • H3FM
  • H3FT
  • H4-16
  • H4/A
  • H4/B
  • H4/C
  • H4/D
  • H4/E
  • H4/G
  • H4/H
  • H4/I
  • H4/J
  • H4/K
  • H4/M
  • H4/N
  • H4/O
  • H4C1
  • H4C11
  • H4C12
  • H4C13
  • H4C14
  • H4C15
  • H4C16
  • H4C2
  • H4C3
  • H4C4
  • H4C5
  • H4C6
  • H4C8
  • H4C9
  • H4F2
  • H4FA
  • H4FB
  • H4FC
  • H4FD
  • H4FE
  • H4FG
  • H4FH
  • H4FI
  • H4FJ
  • H4FK
  • H4FM
  • H4FN
  • H4FO
  • HIRIP1
  • HIRIP2
  • HIST1H2AB
  • HIST1H2AC
  • HIST1H2AD
  • HIST1H2AE
  • HIST1H2AJ
  • HIST1H2BA
  • HIST1H2BB
  • HIST1H2BC
  • HIST1H2BD
  • HIST1H2BE
  • HIST1H2BF
  • HIST1H2BG
  • HIST1H2BH
  • HIST1H2BI
  • HIST1H2BJ
  • HIST1H2BK
  • HIST1H2BL
  • HIST1H2BM
  • HIST1H2BN
  • HIST1H2BO
  • HIST1H3A
  • HIST1H3B
  • HIST1H3D
  • HIST1H3E
  • HIST1H3F
  • HIST1H3G
  • HIST1H3H
  • HIST1H3I
  • HIST1H3J
  • HIST1H4A
  • HIST1H4B
  • HIST1H4C
  • HIST1H4D
  • HIST1H4E
  • HIST1H4F
  • HIST1H4H
  • HIST1H4I
  • HIST1H4J
  • HIST1H4K
  • HIST1H4L
  • HIST2H2AA
  • HIST2H2AA3
  • HIST2H2AA4
  • HIST2H2AC
  • HIST2H2BE
  • HIST2H3A
  • HIST2H3C
  • HIST2H3D
  • HIST2H4
  • HIST2H4A
  • HIST2H4B
  • HIST3H2BB
  • HIST3H3
  • HIST4H4
  • KIAA0056
  • KMT5A
  • LUZP5
  • MCPH1
  • NCAPD3
  • NCAPG2
  • NCAPH2
  • P34CDC2
  • PLK
  • PLK1
  • PRSET7
  • RB1
  • SET
  • SET07
  • SET8
  • SETD8
  • SMC2
  • SMC2L1
  • SMC4
  • SMC4L1
  • TSH2B
Homo sapiens (human)
NOTCH2 Activation and Transmission of Signal to the Nucleus
  • AD3
  • AD4
  • ADAM10
  • APH1A
  • APH1B
  • CNTN1
  • DIP1
  • DLL1
  • DLL4
  • JAG1
  • JAG2
  • JAGL1
  • KIAA0253
  • KIAA1323
  • KUZ
  • MADM
  • MDK
  • MIB1
  • MIB2
  • MK1
  • NCSTN
  • NEGF2
  • NEURL
  • NEURL1
  • NEURL1A
  • NEURL1B
  • NEURL3
  • NOTCH2
  • PEN2
  • PS1
  • PS2
  • PSEN1
  • PSEN2
  • PSENEN
  • PSF
  • PSFL
  • PSNL1
  • PSNL2
  • RNF67
  • RPS27A
  • SKD
  • STM2
  • UBA52
  • UBA80
  • UBB
  • UBC
  • UBCEP1
  • UBCEP2
  • ZZANK1
  • ZZANK2
Homo sapiens (human)
Ion influx/efflux at host-pathogen interface
  • AIPP1
  • ATOX1
  • ATP7A
  • HAH1
  • LSH
  • MC1
  • MNK
  • NRAMP
  • NRAMP1
  • PDZD11
  • PDZK11
  • PISP
  • SLC11A1
Homo sapiens (human)
Regulation of RUNX1 Expression and Activity
  • AGO1
  • AGO2
  • AGO3
  • AGO4
  • AML1
  • BCL1
  • CAGH26
  • CBFA2
  • CBFB
  • CCND1
  • CCND2
  • CCND3
  • CDK6
  • CDKN6
  • EIF2C1
  • EIF2C2
  • EIF2C3
  • EIF2C4
  • KIAA1093
  • KIAA1460
  • KIAA1567
  • KIAA1582
  • KIAA1631
  • MOV10
  • MYL
  • PML
  • PP8675
  • PRAD1
  • PTP2C
  • PTPN11
  • RNF71
  • RUNX1
  • SHPTP2
  • SRC
  • SRC1
  • TNRC6
  • TNRC6A
  • TNRC6B
  • TNRC6C
  • TRIM19
Homo sapiens (human)
RUNX1 regulates transcription of genes involved in BCR signaling
  • AML1
  • BLK
  • CBFA2
  • CBFB
  • ELF1
  • ELF2
  • NERF
  • PAX5
  • RUNX1
Homo sapiens (human)
RUNX1 regulates transcription of genes involved in interleukin signaling
  • AML1
  • CBFA2
  • CBFB
  • ELF1
  • IL3
  • LIFR
  • RUNX1
Homo sapiens (human)
RUNX1 regulates genes involved in megakaryocyte differentiation and platelet function
  • AGO1
  • AGO3
  • AGO4
  • ALL1
  • ALR
  • AML1
  • ASH2L
  • ASH2L1
  • BIG3
  • CAGH26
  • CBFA2
  • CBFB
  • CHN
  • CSMF
  • CXCL4
  • CXXC7
  • DPY30
  • EIF2C1
  • EIF2C3
  • EIF2C4
  • EP300
  • ERYF1
  • FOG1
  • GATA1
  • GF1
  • GP1BA
  • GP2B
  • H2AB1
  • H2AC14
  • H2AC18
  • H2AC19
  • H2AC20
  • H2AC4
  • H2AC6
  • H2AC7
  • H2AC8
  • H2AFA
  • H2AFB1
  • H2AFE
  • H2AFG
  • H2AFJ
  • H2AFL
  • H2AFM
  • H2AFO
  • H2AFQ
  • H2AFV
  • H2AFX
  • H2AJ
  • H2AV
  • H2AX
  • H2AZ2
  • H2BC1
  • H2BC10
  • H2BC11
  • H2BC12
  • H2BC12L
  • H2BC13
  • H2BC14
  • H2BC15
  • H2BC17
  • H2BC21
  • H2BC26
  • H2BC3
  • H2BC4
  • H2BC5
  • H2BC6
  • H2BC7
  • H2BC8
  • H2BC9
  • H2BFA
  • H2BFB
  • H2BFC
  • H2BFD
  • H2BFE
  • H2BFF
  • H2BFG
  • H2BFH
  • H2BFJ
  • H2BFK
  • H2BFL
  • H2BFN
  • H2BFQ
  • H2BFR
  • H2BFS
  • H2BFT
  • H2BS1
  • H2BU1
  • H3-3A
  • H3-3B
  • H3.3A
  • H3.3B
  • H3C1
  • H3C10
  • H3C11
  • H3C12
  • H3C13
  • H3C14
  • H3C15
  • H3C2
  • H3C3
  • H3C4
  • H3C6
  • H3C7
  • H3C8
  • H3F2
  • H3F3
  • H3F3A
  • H3F3B
  • H3FA
  • H3FB
  • H3FC HIST1H3C
  • H3FD
  • H3FF
  • H3FH
  • H3FI
  • H3FJ
  • H3FK
  • H3FL
  • H3FM
  • H4-16
  • H4/A
  • H4/B
  • H4/C
  • H4/D
  • H4/E
  • H4/G
  • H4/H
  • H4/I
  • H4/J
  • H4/K
  • H4/M
  • H4/N
  • H4/O
  • H4C1
  • H4C11
  • H4C12
  • H4C13
  • H4C14
  • H4C15
  • H4C16
  • H4C2
  • H4C3
  • H4C4
  • H4C5
  • H4C6
  • H4C8
  • H4C9
  • H4F2
  • H4FA
  • H4FB
  • H4FC
  • H4FD
  • H4FE
  • H4FG
  • H4FH
  • H4FI
  • H4FJ
  • H4FK
  • H4FM
  • H4FN
  • H4FO
  • HALR
  • HDAC1
  • HIRIP1
  • HIRIP2
  • HIST1H2AB
  • HIST1H2AC
  • HIST1H2AD
  • HIST1H2AE
  • HIST1H2AJ
  • HIST1H2BA
  • HIST1H2BB
  • HIST1H2BC
  • HIST1H2BD
  • HIST1H2BE
  • HIST1H2BF
  • HIST1H2BG
  • HIST1H2BH
  • HIST1H2BI
  • HIST1H2BJ
  • HIST1H2BK
  • HIST1H2BL
  • HIST1H2BM
  • HIST1H2BN
  • HIST1H2BO
  • HIST1H3A
  • HIST1H3B
  • HIST1H3D
  • HIST1H3E
  • HIST1H3F
  • HIST1H3G
  • HIST1H3H
  • HIST1H3I
  • HIST1H3J
  • HIST1H4A
  • HIST1H4B
  • HIST1H4C
  • HIST1H4D
  • HIST1H4E
  • HIST1H4F
  • HIST1H4H
  • HIST1H4I
  • HIST1H4J
  • HIST1H4K
  • HIST1H4L
  • HIST2H2AA
  • HIST2H2AA3
  • HIST2H2AA4
  • HIST2H2AC
  • HIST2H2BE
  • HIST2H3A
  • HIST2H3C
  • HIST2H3D
  • HIST2H4
  • HIST2H4A
  • HIST2H4B
  • HIST3H2BB
  • HIST4H4
  • HMT2
  • HRMT1L2
  • HRMT1L6
  • HRX
  • HRX2
  • HTRX
  • IR1B4
  • ITGA2B
  • ITGAB
  • KAT2B
  • KIAA0304
  • KIAA0339
  • KIAA0700
  • KIAA1076
  • KIAA1093
  • KIAA1460
  • KIAA1506
  • KIAA1567
  • KIAA1582
  • KIAA1631
  • KMT2A
  • KMT2B
  • KMT2C
  • KMT2D
  • KMT2F
  • KMT2G
  • MINOR
  • MLC2
  • MLL
  • MLL1
  • MLL2
  • MLL3
  • MLL4
  • MOV10
  • MRLC1
  • MYL9
  • MYRL2
  • NFE2
  • NOR1
  • NR4A3
  • P300
  • PCAF
  • PF4
  • PRKCQ
  • PRKCT
  • PRMT1
  • PRMT6
  • RBBP5
  • RBQ3
  • RPD3L1
  • RUNX1
  • SCYB4
  • SET1
  • SET1A
  • SET1B
  • SETD1A
  • SETD1B
  • SIN3A
  • SIN3B
  • TEC
  • THBS1
  • TNRC6
  • TNRC6A
  • TNRC6B
  • TNRC6C
  • TRX1
  • TRX2
  • TSH2B
  • TSP
  • TSP1
  • WBP7
  • WDR5
  • ZFN89A
  • ZFPM1
Homo sapiens (human)
RUNX2 regulates genes involved in differentiation of myeloid cells
  • AML1
  • CBFA2
  • CBFB
  • LGALS3
  • MAC2
  • RUNX1
Homo sapiens (human)
RUNX2 regulates chondrocyte maturation
  • CBFB
  • GLI2
  • HDAC4
  • IHH
  • KIAA0288
  • THP
Homo sapiens (human)
RUNX3 Regulates Immune Response and Cell Migration
  • AML2
  • BNSP
  • CBFA3
  • CBFB
  • CD11A
  • CD49D
  • ITGA4
  • ITGAL
  • OPN
  • PEBP2A3
  • RUNX3
  • SPP1
Homo sapiens (human)
RUNX2 regulates bone development
  • BSP1
  • CBFB
  • DPC4
  • MADH1
  • MADH4
  • MADH6
  • MADR1
  • RBM14
  • SIP
  • SMAD1
  • SMAD4
  • SMAD6
Homo sapiens (human)
RUNX3 regulates RUNX1-mediated transcription
  • AML2
  • CBFA3
  • CBFB
  • PEBP2A3
  • RUNX3
Homo sapiens (human)
Prevention of phagosomal-lysosomal fusion
  • CORO1
  • CORO1A
  • HGS
  • HRS
  • RAB5
  • RAB5A
  • RAB7
  • RAB7A
  • RPS27A
  • Rv1410c
  • UBA52
  • UBA80
  • UBB
  • UBC
  • UBCEP1
  • UBCEP2
  • VPS33B
  • cfp7
  • esxG
  • esxH
  • lpd
  • lpdC
  • lpp-27
  • lprG
  • mptpA
  • ndk
  • ndkA
  • ptpA
  • sapM
  • secA2
Homo sapiens (human)
Defective MMAB causes MMA, cblB type
  • MMAB
Homo sapiens (human)
Creatine metabolism
  • AGAT
  • BGT1
  • CKB
  • CKBB
  • CKM
  • CKMM
  • CKMT
  • CKMT1A
  • CKMT1B
  • CKMT2
  • GABT3
  • GAMT
  • GAT3
  • GATM
  • PROT
  • SLC6A11
  • SLC6A12
  • SLC6A7
  • SLC6A8
Homo sapiens (human)
Erythropoietin activates RAS
  • CRKL
  • EPO
  • EPOR
  • GRF2
  • HRAS
  • HRAS1
  • IRS2
  • JAK2
  • JTK8
  • LYN
  • NRAS
  • RAPGEF1
  • SHC
  • SHC1
  • SHCA
  • SOS1
  • VAV
  • VAV1
Homo sapiens (human)
MAP3K8 (TPL2)-dependent MAPK1/3 activation
  • ABIN2
  • BTRC
  • BTRCP
  • BTRCP2
  • CHUK
  • COT
  • CUL1
  • EMC19
  • ESTF
  • FBW1A
  • FBW1B
  • FBXW11
  • FBXW1A
  • FBXW1B
  • FIP3
  • FLIP1
  • IKBKB
  • IKBKG
  • IKKA
  • IKKB
  • JNKK1
  • KIAA0696
  • MAP2K1
  • MAP2K4
  • MAP3K8
  • MEK1
  • MEK4
  • MKK4
  • NEMO
  • NFKB1
  • OCP2
  • PRKMK1
  • PRKMK4
  • RPS27A
  • SEK1
  • SERK1
  • SKK1
  • SKP1
  • SKP1A
  • TCEB1L
  • TCF16
  • TNIP2
  • UBA52
  • UBA80
  • UBB
  • UBC
  • UBCEP1
  • UBCEP2
Homo sapiens (human)

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Acknowledgements

Supported by JST NBDC Grant Number JPMJND2204

Partly supported by NIH Common Fund Grant #1U01GM125267-01


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